BLASTX 7.6.2
Query= UN42121 /QuerySize=765
(764 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protei... 218 4e-056
sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protei... 212 2e-054
sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protei... 210 1e-053
sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS... 173 1e-042
sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS... 171 7e-042
sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS... 171 7e-042
sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protei... 149 2e-035
sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protei... 142 4e-033
sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protei... 134 1e-030
sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bo... 70 1e-011
sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Ho... 70 1e-011
sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Ma... 70 1e-011
sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mu... 70 1e-011
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza
sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 218 bits (554), Expect = 4e-056
Identities = 111/134 (82%), Positives = 116/134 (86%), Gaps = 8/134 (5%)
Frame = +1
Query: 214 MLPLSLLKTAQGYPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 393
MLPLSLLKTAQG+PMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60
Query: 394 IRGNTIKYLRVPDEVIDKVQEE--KTRTDRKPPGVGRGRGRGMDDG---GGRGRGRGAPM 558
IRGNTIKYLRVPDEVIDKVQEE K+R+DR+PPGVGRGRGRG D G GGRG GRG
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRG-DIGTKPGGRGIGRGQDD 119
Query: 559 AKMTGNRGAGRGRG 600
G G GRGRG
Sbjct: 120 GGSKG--GGGRGRG 131
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 212 bits (539), Expect = 2e-054
Identities = 100/114 (87%), Positives = 107/114 (93%), Gaps = 1/114 (0%)
Frame = +1
Query: 214 MLPLSLLKTAQGYPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 393
MLPLSLLKTAQG+PMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60
Query: 394 IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGMDDGGGRGRGRGA 552
IRGNTIKYLRVPDEVIDKVQEE K+R DRKPPGVGRGRGRG ++G G + RGA
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGA 114
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4
OS=Nicotiana tabacum PE=2 SV=1
Length = 146
Score = 210 bits (532), Expect = 1e-053
Identities = 103/130 (79%), Positives = 107/130 (82%), Gaps = 1/130 (0%)
Frame = +1
Query: 214 MLPLSLLKTAQGYPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 393
MLPLSLLKTAQG+PMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
Query: 394 IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAPMAKMT 570
+RGNTIKYLRVPDEVIDKVQEE K+RTDRKPPGVGR R RG D GR M
Sbjct: 61 VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120
Query: 571 GNRGAGRGRG 600
GRG+G
Sbjct: 121 DGGAKGRGKG 130
Score = 56 bits (133), Expect = 3e-007
Identities = 30/54 (55%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Frame = +1
Query: 448 VQEEKTRTDRKPPGVGR---GRGRGMDDGGGRGRGRGAPMAKMTGNRGAGRGRG 600
V + R R VGR G GRGMDDGG +GRG+G P AK +G RG GRGRG
Sbjct: 94 VGRARARGGRDDSAVGRQPKGIGRGMDDGGAKGRGKGGPSAK-SGGRGGGRGRG 146
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus
GN=Lsm4 PE=2 SV=1
Length = 137
Score = 173 bits (438), Expect = 1e-042
Identities = 90/133 (67%), Positives = 103/133 (77%), Gaps = 13/133 (9%)
Frame = +1
Query: 214 MLPLSLLKTAQGYPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 393
MLPLSLLKTAQ +PMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 394 IRGNTIKYLRVPDEVIDKVQEEKTR-TDRKPPGVGRGRGRGMDDGGGR----GRGRGAPM 558
IRG+TIKYLR+PDE+ID V+EE + R P + +GRGM G GR GRGRG
Sbjct: 61 IRGSTIKYLRIPDEIIDMVREEAAKGRGRGGPQQKQQKGRGM-GGAGRGVFGGRGRG--- 116
Query: 559 AKMTGNRGAGRGR 597
G GAGRG+
Sbjct: 117 ----GIPGAGRGQ 125
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus
GN=LSM4 PE=2 SV=1
Length = 139
Score = 171 bits (431), Expect = 7e-042
Identities = 86/133 (64%), Positives = 97/133 (72%), Gaps = 11/133 (8%)
Frame = +1
Query: 214 MLPLSLLKTAQGYPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 393
MLPLSLLKTAQ +PMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 394 IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAPMAKMTG 573
IRG+TIKYLR+PDE+ID V+EE GRGRG +GRG G + G
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVV-------AKGRGRGGLQQQKQQKGRGMGGAGRGVFG 113
Query: 574 NRG----AGRGRG 600
RG G GRG
Sbjct: 114 GRGRGGIPGTGRG 126
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens
GN=LSM4 PE=1 SV=1
Length = 139
Score = 171 bits (431), Expect = 7e-042
Identities = 86/133 (64%), Positives = 97/133 (72%), Gaps = 11/133 (8%)
Frame = +1
Query: 214 MLPLSLLKTAQGYPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 393
MLPLSLLKTAQ +PMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 394 IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAPMAKMTG 573
IRG+TIKYLR+PDE+ID V+EE GRGRG +GRG G + G
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVV-------AKGRGRGGLQQQKQQKGRGMGGAGRGVFG 113
Query: 574 NRG----AGRGRG 600
RG G GRG
Sbjct: 114 GRGRGGIPGTGRG 126
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4
OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 149 bits (376), Expect = 2e-035
Identities = 78/136 (57%), Positives = 94/136 (69%), Gaps = 6/136 (4%)
Frame = +1
Query: 214 MLPLSLLKTAQGYPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 393
MLPLSLL+T QG+ ++VELKNGETYNG LVNCD WMNI+L+ VI TSKD D+FW++ CY
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCY 60
Query: 394 IRGNTIKYLRVPDEVIDKVQEEK---TRTDRKPPGVGRGRGRGMDDGGGRGRGRGAPMAK 564
IRGNTIKY+ VPDE+ID V EE+ T ++ RGRGRG G GRGRG +
Sbjct: 61 IRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGRG---DGFAGRGRGDASGR 117
Query: 565 MTGNRGAGRGRG*YNN 612
G+ GRG NN
Sbjct: 118 GRGDNSYRGGRGGGNN 133
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 142 bits (356), Expect = 4e-033
Identities = 71/117 (60%), Positives = 88/117 (75%), Gaps = 8/117 (6%)
Frame = +1
Query: 214 MLPLSLLKTAQGYPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 393
+LPLSLLKTAQ +PMLVELKNGETYNGHL CD+WMNIHL +VI TSKDGD+F++M E Y
Sbjct: 2 VLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAY 61
Query: 394 IRGNTIKYLRVPDEVID-------KVQEEKTRTDRKPPGVGRGRGRGMDDGGGRGRG 543
+RG+TIKYLR+P+ V+D +V+ ++ R + G GRG GRG GGG RG
Sbjct: 62 VRGSTIKYLRIPETVVDLVKTEVNEVRRQQQREQSRGRGGGRG-GRGGHRGGGGNRG 117
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe GN=lsm4 PE=2 SV=1
Length = 121
Score = 134 bits (335), Expect = 1e-030
Identities = 72/121 (59%), Positives = 86/121 (71%), Gaps = 6/121 (4%)
Frame = +1
Query: 214 MLPLSLLKTAQGYPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 393
MLPL+LL QG P+LVELKNGET+NGHL NCD +MN+ LREVI T DGD+F+R+PECY
Sbjct: 1 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECY 60
Query: 394 IRGNTIKYLRVPDEVIDKV--QEEKTRTDRKPPGVGRG-RGR---GMDDGGGRGRGRGAP 555
IRGN IKYLR+ DEV+ +V Q+ + R +R GRG RGR G RGRGRG
Sbjct: 61 IRGNNIKYLRIQDEVLSQVAKQQAQQRENRGSRFRGRGQRGRGNYGHTAPNRRGRGRGGH 120
Query: 556 M 558
M
Sbjct: 121 M 121
>sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus
GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 70 bits (171), Expect = 1e-011
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Frame = +1
Query: 262 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 438
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSLP 75
Query: 439 IDKV---QEEKTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAP 555
+D + E K ++ ++ GRGRGRG G GRGRGRG P
Sbjct: 76 LDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGP 117
>sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens
GN=SNRPD1 PE=1 SV=1
Length = 119
Score = 70 bits (171), Expect = 1e-011
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Frame = +1
Query: 262 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 438
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSLP 75
Query: 439 IDKV---QEEKTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAP 555
+D + E K ++ ++ GRGRGRG G GRGRGRG P
Sbjct: 76 LDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGP 117
>sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca
fascicularis GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 70 bits (171), Expect = 1e-011
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Frame = +1
Query: 262 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 438
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSLP 75
Query: 439 IDKV---QEEKTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAP 555
+D + E K ++ ++ GRGRGRG G GRGRGRG P
Sbjct: 76 LDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGP 117
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus
GN=Snrpd1 PE=2 SV=1
Length = 119
Score = 70 bits (171), Expect = 1e-011
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Frame = +1
Query: 262 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 438
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSLP 75
Query: 439 IDKV---QEEKTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAP 555
+D + E K ++ ++ GRGRGRG G GRGRGRG P
Sbjct: 76 LDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGP 117
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,830,358,129
Number of Sequences: 518415
Number of Extensions: 160830358129
Number of Successful Extensions: 990542261
Number of sequences better than 0.0: 0
|
