BLASTX 7.6.2
Query= UN42260 /QuerySize=717
(716 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 207 8e-054
TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 207 8e-054
TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH ... 207 8e-054
TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 101 5e-022
TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 101 5e-022
TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, N... 101 5e-022
TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 100 1e-021
TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 98 4e-021
TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3... 98 4e-021
TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 93 2e-019
TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 93 2e-019
TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4... 93 2e-019
TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 |... 82 2e-016
TAIR9_protein||AT2G34450.1 | Symbols: | high mobility group (HM... 75 3e-014
TAIR9_protein||AT1G48400.1 | Symbols: | F-box family protein | ... 56 2e-008
TAIR9_protein||AT2G21420.1 | Symbols: | zinc finger protein-rel... 54 8e-008
>TAIR9_protein||AT3G51880.1 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 207 bits (525), Expect = 8e-054
Identities = 101/111 (90%), Positives = 107/111 (96%)
Frame = +2
Query: 98 MKTAKGKGKAKTTKEALKPVDDRKVGKRKAPAEKPSKRETRREKKAKKDPNKPKRAPSAF 277
MKTAKGK K KTTKEALKPVDDRKVGKRKAPAEKP+KRETR+EKKAKKDPNKPKRAPSAF
Sbjct: 1 MKTAKGKDKVKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAF 60
Query: 278 FVFLEDFRQTFKKENPDVKAVSAVGKAGGQKWRSMSQAEKAPYEEKAAEER 430
FVFLEDFR TFKKENP+VKAVSAVGKAGGQKW+SMSQAEKAPYEEKAA+ +
Sbjct: 61 FVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRK 111
>TAIR9_protein||AT3G51880.2 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 186
Score = 207 bits (525), Expect = 8e-054
Identities = 101/111 (90%), Positives = 107/111 (96%)
Frame = +2
Query: 98 MKTAKGKGKAKTTKEALKPVDDRKVGKRKAPAEKPSKRETRREKKAKKDPNKPKRAPSAF 277
MKTAKGK K KTTKEALKPVDDRKVGKRKAPAEKP+KRETR+EKKAKKDPNKPKRAPSAF
Sbjct: 1 MKTAKGKDKVKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAF 60
Query: 278 FVFLEDFRQTFKKENPDVKAVSAVGKAGGQKWRSMSQAEKAPYEEKAAEER 430
FVFLEDFR TFKKENP+VKAVSAVGKAGGQKW+SMSQAEKAPYEEKAA+ +
Sbjct: 61 FVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRK 111
>TAIR9_protein||AT3G51880.3 | Symbols: HMGB1, NFD1 | HMGB1 (HIGH MOBILITY GROUP
B 1); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr3:19247241-19248491 REVERSE
Length = 179
Score = 207 bits (525), Expect = 8e-054
Identities = 101/111 (90%), Positives = 107/111 (96%)
Frame = +2
Query: 98 MKTAKGKGKAKTTKEALKPVDDRKVGKRKAPAEKPSKRETRREKKAKKDPNKPKRAPSAF 277
MKTAKGK K KTTKEALKPVDDRKVGKRKAPAEKP+KRETR+EKKAKKDPNKPKRAPSAF
Sbjct: 1 MKTAKGKDKVKTTKEALKPVDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAF 60
Query: 278 FVFLEDFRQTFKKENPDVKAVSAVGKAGGQKWRSMSQAEKAPYEEKAAEER 430
FVFLEDFR TFKKENP+VKAVSAVGKAGGQKW+SMSQAEKAPYEEKAA+ +
Sbjct: 61 FVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRK 111
>TAIR9_protein||AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 145
Score = 101 bits (251), Expect = 5e-022
Identities = 52/81 (64%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
Frame = +2
Query: 194 EKPSKRETRREKKAKKDPNKPKRAPSAFFVFLEDFRQTFKKENPDVKAVSAVGKAGGQKW 373
+KP+K R K A KDPNKPKR SAFFVF+EDFR+TFKKENP K+V+ VGKA G KW
Sbjct: 19 KKPAK-GAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKW 77
Query: 374 RSMSQAEKAPYEEKAAEERQV 436
+S+S +EKAPY K AE+R+V
Sbjct: 78 KSLSDSEKAPYVAK-AEKRKV 97
>TAIR9_protein||AT1G20693.2 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 143
Score = 101 bits (251), Expect = 5e-022
Identities = 52/81 (64%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
Frame = +2
Query: 194 EKPSKRETRREKKAKKDPNKPKRAPSAFFVFLEDFRQTFKKENPDVKAVSAVGKAGGQKW 373
+KP+K R K A KDPNKPKR SAFFVF+EDFR+TFKKENP K+V+ VGKA G KW
Sbjct: 19 KKPAK-GAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKW 77
Query: 374 RSMSQAEKAPYEEKAAEERQV 436
+S+S +EKAPY K AE+R+V
Sbjct: 78 KSLSDSEKAPYVAK-AEKRKV 97
>TAIR9_protein||AT1G20693.3 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | HMGB2
(HIGH MOBILITY GROUP B 2); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor | chr1:7177282-7178487
FORWARD
Length = 144
Score = 101 bits (251), Expect = 5e-022
Identities = 52/81 (64%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
Frame = +2
Query: 194 EKPSKRETRREKKAKKDPNKPKRAPSAFFVFLEDFRQTFKKENPDVKAVSAVGKAGGQKW 373
+KP+K R K A KDPNKPKR SAFFVF+EDFR+TFKKENP K+V+ VGKA G KW
Sbjct: 19 KKPAK-GAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKW 77
Query: 374 RSMSQAEKAPYEEKAAEERQV 436
+S+S +EKAPY K AE+R+V
Sbjct: 78 KSLSDSEKAPYVAK-AEKRKV 97
>TAIR9_protein||AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181193 FORWARD
Length = 148
Score = 100 bits (248), Expect = 1e-021
Identities = 50/102 (49%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
Frame = +2
Query: 203 SKRETRREKKAKKDPNKPKRAPSAFFVFLEDFRQTFKKENPDVKAVSAVGKAGGQKWRSM 382
+K+ + K A KDPNKPKR SAFFVF+EDFR T+K+E+P K+V+AVGKAGG+KW+S+
Sbjct: 18 TKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSL 77
Query: 383 SQAEKAPYEEKAAEERQVRMTMMMMMKMTMMMMMMKMTRKKT 508
S +EKAPY K A++R+V M +++ ++ R T
Sbjct: 78 SDSEKAPYVAK-ADKRKVEYEKNMKAYNKKLVIALRKMRNLT 118
>TAIR9_protein||AT1G20696.1 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181174 FORWARD
Length = 142
Score = 98 bits (243), Expect = 4e-021
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +2
Query: 203 SKRETRREKKAKKDPNKPKRAPSAFFVFLEDFRQTFKKENPDVKAVSAVGKAGGQKWRSM 382
+K+ + K A KDPNKPKR SAFFVF+EDFR T+K+E+P K+V+AVGKAGG+KW+S+
Sbjct: 18 TKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSL 77
Query: 383 SQAEKAPYEEKAAEER 430
S +EKAPY KA + +
Sbjct: 78 SDSEKAPYVAKADKRK 93
>TAIR9_protein||AT1G20696.3 | Symbols: HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY
GROUP B 3); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr1:7179825-7181170 FORWARD
Length = 141
Score = 98 bits (243), Expect = 4e-021
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +2
Query: 203 SKRETRREKKAKKDPNKPKRAPSAFFVFLEDFRQTFKKENPDVKAVSAVGKAGGQKWRSM 382
+K+ + K A KDPNKPKR SAFFVF+EDFR T+K+E+P K+V+AVGKAGG+KW+S+
Sbjct: 18 TKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSL 77
Query: 383 SQAEKAPYEEKAAEER 430
S +EKAPY KA + +
Sbjct: 78 SDSEKAPYVAKADKRK 93
>TAIR9_protein||AT2G17560.1 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 93 bits (229), Expect = 2e-019
Identities = 47/92 (51%), Positives = 61/92 (66%), Gaps = 4/92 (4%)
Frame = +2
Query: 167 KVGKRKAPAEKPSKRETRREKKA----KKDPNKPKRAPSAFFVFLEDFRQTFKKENPDVK 334
K G+ KA A +R R +KA KKDPN+PKR PSAFFVFLEDFR+ F NP+ K
Sbjct: 2 KGGESKAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNK 61
Query: 335 AVSAVGKAGGQKWRSMSQAEKAPYEEKAAEER 430
+V+ VGKA G +W++M+ +KAPY KA +
Sbjct: 62 SVATVGKAAGARWKAMTDEDKAPYVAKAESRK 93
>TAIR9_protein||AT2G17560.2 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 139
Score = 93 bits (229), Expect = 2e-019
Identities = 47/92 (51%), Positives = 61/92 (66%), Gaps = 4/92 (4%)
Frame = +2
Query: 167 KVGKRKAPAEKPSKRETRREKKA----KKDPNKPKRAPSAFFVFLEDFRQTFKKENPDVK 334
K G+ KA A +R R +KA KKDPN+PKR PSAFFVFLEDFR+ F NP+ K
Sbjct: 2 KGGESKAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNK 61
Query: 335 AVSAVGKAGGQKWRSMSQAEKAPYEEKAAEER 430
+V+ VGKA G +W++M+ +KAPY KA +
Sbjct: 62 SVATVGKAAGARWKAMTDEDKAPYVAKAESRK 93
>TAIR9_protein||AT2G17560.3 | Symbols: HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY
GROUP B 4); DNA binding / chromatin binding / structural constituent of
chromatin / transcription factor | chr2:7642486-7643468 REVERSE
Length = 135
Score = 93 bits (229), Expect = 2e-019
Identities = 47/92 (51%), Positives = 61/92 (66%), Gaps = 4/92 (4%)
Frame = +2
Query: 167 KVGKRKAPAEKPSKRETRREKKA----KKDPNKPKRAPSAFFVFLEDFRQTFKKENPDVK 334
K G+ KA A +R R +KA KKDPN+PKR PSAFFVFLEDFR+ F NP+ K
Sbjct: 2 KGGESKAEATSTDQRLKTRGRKAGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNK 61
Query: 335 AVSAVGKAGGQKWRSMSQAEKAPYEEKAAEER 430
+V+ VGKA G +W++M+ +KAPY KA +
Sbjct: 62 SVATVGKAAGARWKAMTDEDKAPYVAKAESRK 93
>TAIR9_protein||AT4G35570.1 | Symbols: HMGB5, NFD5, HMGD, NFD05 | HMGB5 (HIGH
MOBILITY GROUP B 5); DNA binding / chromatin binding / structural
constituent of chromatin / transcription factor |
chr4:16887363-16888184 REVERSE
Length = 126
Score = 82 bits (202), Expect = 2e-016
Identities = 36/81 (44%), Positives = 53/81 (65%)
Frame = +2
Query: 230 KAKKDPNKPKRAPSAFFVFLEDFRQTFKKENPDVKAVSAVGKAGGQKWRSMSQAEKAPYE 409
K KDPN+PK+ PS FFVFL+DFR+ F NPD K+V VG+A G+KW++M++ E+AP+
Sbjct: 26 KKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFV 85
Query: 410 EKAAEERQVRMTMMMMMKMTM 472
K+ ++ M M +
Sbjct: 86 AKSQSKKTEYAVTMQQYNMEL 106
>TAIR9_protein||AT2G34450.1 | Symbols: | high mobility group (HMG1/2) family
protein | chr2:14527918-14529448 REVERSE
Length = 152
Score = 75 bits (184), Expect = 3e-014
Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Frame = +2
Query: 119 GKAKTTKEALKPVDD--RKVGKRKAPAEKPSKRETRREKKAKKDPNKPKRAPSAFFVFLE 292
G ++ + A+K + R R P KP + + ++K K PK+ +AFF FL+
Sbjct: 18 GSSRNLELAVKSSEGARRSTRLRLQPLRKP--KTSPKKKPVKLQTKMPKKPATAFFFFLD 75
Query: 293 DFRQTFKKENPDVKAVSAVGKAGGQKWRSMSQAEKAPYEEKAAEERQ 433
DFR+ +++ENPDVK++ +GK G+KW++M+ EK Y + A E+R+
Sbjct: 76 DFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKRE 122
>TAIR9_protein||AT1G48400.1 | Symbols: | F-box family protein |
chr1:17882136-17883855 REVERSE
Length = 514
Score = 56 bits (133), Expect = 2e-008
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = +1
Query: 436 EDDDDDDDEDDDDDDDDEDDEEED*TGDRDQSLDLADKY 552
+DDDDDDD+DDDDDDDD+DD+++D D D D D Y
Sbjct: 291 DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDGDYY 329
>TAIR9_protein||AT2G21420.1 | Symbols: | zinc finger protein-related |
chr2:9169713-9171746 FORWARD
Length = 469
Score = 54 bits (128), Expect = 8e-008
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +1
Query: 433 GEDDDDDDDEDDDDDDDDEDDEEED*TGDRDQSLD 537
G DDDDDDD+DDDDDDDD+DD+++D D D D
Sbjct: 389 GCDDDDDDDDDDDDDDDDDDDDDDDDDDDEDDEDD 423
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,795,870,354
Number of Sequences: 33410
Number of Extensions: 20795870354
Number of Successful Extensions: 658878764
Number of sequences better than 0.0: 0
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