BLASTX 7.6.2
Query= UN42427 /QuerySize=935
(934 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=... 208 8e-053
sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic ... 176 2e-043
sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic O... 141 7e-033
sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=... 141 9e-033
sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=... 138 1e-031
sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic O... 137 2e-031
sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=... 114 9e-025
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=... 111 1e-023
sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=... 106 2e-022
sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=... 105 5e-022
sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=H... 91 1e-017
sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=S... 90 2e-017
sp|Q03250|GRP7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabi... 88 7e-017
sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=S... 87 2e-016
sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitocho... 86 3e-016
sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorgh... 85 6e-016
sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Bra... 84 2e-015
sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus ... 82 4e-015
sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-ind... 82 5e-015
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis
thaliana GN=RBP29 PE=1 SV=2
Length = 342
Score = 208 bits (527), Expect = 8e-053
Identities = 110/137 (80%), Positives = 119/137 (86%), Gaps = 4/137 (2%)
Frame = +2
Query: 341 RSGGYGSER-SGYGSER-SGYGSQRSGRSGYGSERSSY--GSGSGSGSGSSDRVYVGNLS 508
R GGYGSER GYGSER GYGSQRSG GS+RSSY GSGSGSGSGS +R+YVGNLS
Sbjct: 206 RGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLS 265
Query: 509 WGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDG 688
WGVDDM LE+LF+EQGKVVEARVIYDR++GRSKGFGFVTL S QEV +AI+SLNGADLDG
Sbjct: 266 WGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDG 325
Query: 689 RQIRVSEAEAGPPRRQF 739
RQIRVSEAEA PPR QF
Sbjct: 326 RQIRVSEAEARPPRGQF 342
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis
thaliana GN=At2g37220 PE=1 SV=1
Length = 289
Score = 176 bits (446), Expect = 2e-043
Identities = 88/114 (77%), Positives = 95/114 (83%)
Frame = +2
Query: 398 GSQRSGRSGYGSERSSYGSGSGSGSGSSDRVYVGNLSWGVDDMVLESLFSEQGKVVEARV 577
G R RS +GS S YG G GSG+GS +RVYVGNLSWGVDDM LESLFSEQGKVVEARV
Sbjct: 176 GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARV 235
Query: 578 IYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDGRQIRVSEAEAGPPRRQF 739
IYDR++GRSKGFGFVT S QEV AI SL+GADLDGRQIRVSEAEA PPRRQ+
Sbjct: 236 IYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana
sylvestris PE=2 SV=1
Length = 291
Score = 141 bits (355), Expect = 7e-033
Identities = 74/121 (61%), Positives = 87/121 (71%), Gaps = 4/121 (3%)
Frame = +2
Query: 383 ERSGYGSQRSGRSGYGSER---SSYGSGSGSGS-GSSDRVYVGNLSWGVDDMVLESLFSE 550
E S +G R G S YG R SS+G G S SS+RVYVGNLSWGVDD+ L+ LFSE
Sbjct: 170 ENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSE 229
Query: 551 QGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDGRQIRVSEAEAGPPR 730
QG VV+A+V+YDR++GRS+GFGFVT S +EV AI SLNG DLDGR IRVS AE P R
Sbjct: 230 QGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRR 289
Query: 731 R 733
+
Sbjct: 290 Q 290
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 141 bits (354), Expect = 9e-033
Identities = 74/121 (61%), Positives = 87/121 (71%), Gaps = 4/121 (3%)
Frame = +2
Query: 383 ERSGYGSQRSGRSGYGSER---SSYGSGSGSGS-GSSDRVYVGNLSWGVDDMVLESLFSE 550
E S +G R G S YG R SS+G G S SS+RVYVGNLSWGVDD+ L+ LFSE
Sbjct: 171 ENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSE 230
Query: 551 QGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDGRQIRVSEAEAGPPR 730
QG VV+A+V+YDR++GRS+GFGFVT S +EV AI SLNG DLDGR IRVS AE P R
Sbjct: 231 QGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRR 290
Query: 731 R 733
+
Sbjct: 291 Q 291
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 138 bits (345), Expect = 1e-031
Identities = 71/118 (60%), Positives = 86/118 (72%), Gaps = 1/118 (0%)
Frame = +2
Query: 389 SGYGSQRSGRSGYGSERSSYGSGSGSGS-GSSDRVYVGNLSWGVDDMVLESLFSEQGKVV 565
SG ++ S + S G G GS SS+RVYVGNL+WGVD LE+LFSEQGKVV
Sbjct: 162 SGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVV 221
Query: 566 EARVIYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDGRQIRVSEAEAGPPRRQF 739
+A+V+YDR++GRS+GFGFVT S +EV AI SL+G DL+GR IRVS AEA PPRRQF
Sbjct: 222 DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana
sylvestris PE=2 SV=1
Length = 273
Score = 137 bits (343), Expect = 2e-031
Identities = 71/104 (68%), Positives = 84/104 (80%), Gaps = 2/104 (1%)
Frame = +2
Query: 434 ERSSYGSGS-GSGS-GSSDRVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSK 607
E SS+ GS G GS SS+RVYVGNL+WGVD LE+LFSEQGKVV+A+V+YDR++GRS+
Sbjct: 170 ENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSR 229
Query: 608 GFGFVTLGSPQEVTRAISSLNGADLDGRQIRVSEAEAGPPRRQF 739
GFGFVT S +EV AI SL+G DL+GR IRVS AEA PPRRQF
Sbjct: 230 GFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis
thaliana GN=RBP31 PE=1 SV=1
Length = 329
Score = 114 bits (285), Expect = 9e-025
Identities = 56/85 (65%), Positives = 67/85 (78%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
RVYVGNL W VD+ LE LFSE GKVVEARV+YDRETGRS+GFGFVT+ E+ AIS+
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 665 LNGADLDGRQIRVSEAEAGPPRRQF 739
L+G +L+GR IRV+ AE PPRR +
Sbjct: 305 LDGQNLEGRAIRVNVAEERPPRRGY 329
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 315
Score = 111 bits (275), Expect = 1e-023
Identities = 54/87 (62%), Positives = 66/87 (75%)
Frame = +2
Query: 479 SDRVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAI 658
S R+YVGN+ WG+DD LE LFSE GKVV ARV+YDRETGRS+GFGFVT+ S E++ AI
Sbjct: 229 SYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAI 288
Query: 659 SSLNGADLDGRQIRVSEAEAGPPRRQF 739
++L+G LDGR IRV+ AE R F
Sbjct: 289 ANLDGQSLDGRTIRVNVAEDRSRRNTF 315
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 276
Score = 106 bits (264), Expect = 2e-022
Identities = 49/85 (57%), Positives = 65/85 (76%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R+YVGN+ W +DD LE +FSE GKVV ARV++DRE+GRS+GFGFVT+ S E++ AI++
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 665 LNGADLDGRQIRVSEAEAGPPRRQF 739
L+G LDGR IRV+ AE P R +
Sbjct: 252 LDGQTLDGRTIRVNAAEERPRRNTY 276
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia
oleracea PE=1 SV=1
Length = 233
Score = 105 bits (261), Expect = 5e-022
Identities = 54/84 (64%), Positives = 62/84 (73%)
Frame = +2
Query: 479 SDRVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAI 658
S RVYVGNL W VD LE LFSE GKVV ARV+ DRETGRS+GFGFVT+ S EV AI
Sbjct: 148 SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAI 207
Query: 659 SSLNGADLDGRQIRVSEAEAGPPR 730
++L+G LDGR +RV+ AE P R
Sbjct: 208 AALDGQTLDGRAVRVNVAEERPRR 231
Score = 83 bits (204), Expect = 2e-015
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 7/118 (5%)
Frame = +2
Query: 401 SQRSGRSGYGSE-RSSYGSGSGSGSGSSD-----RVYVGNLSWGVDDMVLESLFSEQGKV 562
S G +GSE + S G G G S+ +++VGNL + VD L +F G V
Sbjct: 22 SDPEGAVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVV 81
Query: 563 VEARVIYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDGRQIRVSE-AEAGPPRR 733
A VIY+RET RS+GFGFVT+ + +E +A+ LNG D+DGRQ+ V++ A G P R
Sbjct: 82 EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPER 139
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 91 bits (224), Expect = 1e-017
Identities = 40/78 (51%), Positives = 58/78 (74%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L W DD L++ FS+ G V+++++I DRETGRS+GFGFVT S + + +AI +
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG DLDGR I V+EA++
Sbjct: 67 MNGQDLDGRNITVNEAQS 84
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba
PE=2 SV=1
Length = 166
Score = 90 bits (221), Expect = 2e-017
Identities = 40/78 (51%), Positives = 57/78 (73%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L+W DD LE+ FS+ G+V+++++I DRETGRS+GFGFVT + + AI
Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG DLDGR I V+EA++
Sbjct: 69 MNGQDLDGRSITVNEAQS 86
>sp|Q03250|GRP7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=GRP7 PE=1 SV=1
Length = 176
Score = 88 bits (217), Expect = 7e-017
Identities = 39/78 (50%), Positives = 56/78 (71%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L+W DD LE+ F++ G V+++++I DRETGRS+GFGFVT + + AI
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG DLDGR I V+EA++
Sbjct: 69 MNGQDLDGRSITVNEAQS 86
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba
PE=2 SV=1
Length = 169
Score = 87 bits (213), Expect = 2e-016
Identities = 39/78 (50%), Positives = 57/78 (73%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L+W D+ LE+ FS+ G++V++++I DRETGRS+GFGFVT + + AI
Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG DLDGR I V+EA++
Sbjct: 69 MNGQDLDGRSITVNEAQS 86
>sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial
OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1
Length = 158
Score = 86 bits (211), Expect = 3e-016
Identities = 41/82 (50%), Positives = 54/82 (65%)
Frame = +2
Query: 479 SDRVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAI 658
S ++++G LSWG DD L F+ G VV+A+VI DRETGRS+GFGFV T AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 659 SSLNGADLDGRQIRVSEAEAGP 724
S ++G +L+GR IRV+ A P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRP 115
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor
GN=GRP2 PE=2 SV=1
Length = 168
Score = 85 bits (209), Expect = 6e-016
Identities = 38/78 (48%), Positives = 57/78 (73%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L+W ++ LE F+ G+V++++VI DRETGRS+GFGFVT S Q + AI +
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG +LDGR I V++A++
Sbjct: 69 MNGKELDGRNITVNQAQS 86
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus
GN=GRP10 PE=2 SV=1
Length = 169
Score = 84 bits (205), Expect = 2e-015
Identities = 38/78 (48%), Positives = 55/78 (70%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L+W D LE FS+ G+V+++++I DRETGRS+GFGFVT + + AI
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG +LDGR I V+EA++
Sbjct: 67 MNGKELDGRTITVNEAQS 84
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2
SV=1
Length = 157
Score = 82 bits (202), Expect = 4e-015
Identities = 37/78 (47%), Positives = 54/78 (69%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L+W +D LE FS+ G + ++++I DRETGRS+GFGFVT + + AI
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG +LDGR I V+EA++
Sbjct: 67 MNGQELDGRNITVNEAQS 84
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein
OS=Zea mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 82 bits (201), Expect = 5e-015
Identities = 36/78 (46%), Positives = 56/78 (71%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L+W + LE+ F+ G++++++VI DRETGRS+GFGFVT S + AI +
Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG +LDGR I V++A++
Sbjct: 69 MNGKELDGRNITVNQAQS 86
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,906,083,408
Number of Sequences: 518415
Number of Extensions: 161906083408
Number of Successful Extensions: 1010567443
Number of sequences better than 0.0: 0
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