BLASTX 7.6.2
Query= UN42427 /QuerySize=935
(934 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding /... 208 5e-054
TAIR9_protein||AT3G53460.2 | Symbols: CP29 | CP29; RNA binding /... 208 5e-054
TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotei... 177 1e-044
TAIR9_protein||AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRB... 115 6e-026
TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotei... 96 2e-020
TAIR9_protein||AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP... 88 6e-018
TAIR9_protein||AT2G21660.2 | Symbols: ATGRP7, CCR2 | CCR2 (COLD,... 88 6e-018
TAIR9_protein||AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYC... 87 1e-017
TAIR9_protein||AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYC... 87 1e-017
TAIR9_protein||AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | GR... 86 3e-017
TAIR9_protein||AT4G13850.2 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-... 86 3e-017
TAIR9_protein||AT4G13850.3 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-... 86 3e-017
TAIR9_protein||AT4G13850.4 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-... 86 3e-017
TAIR9_protein||AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP... 79 3e-015
TAIR9_protein||AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RB... 79 3e-015
TAIR9_protein||AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RB... 79 3e-015
TAIR9_protein||AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine... 79 4e-015
TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA b... 77 1e-014
>TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding / poly(U)
binding | chr3:19819738-19821423 REVERSE
Length = 343
Score = 208 bits (528), Expect = 5e-054
Identities = 110/138 (79%), Positives = 119/138 (86%), Gaps = 4/138 (2%)
Frame = +2
Query: 341 RSGGYGSER-SGYGSER-SGYGSQRSGRSGYGSERSSY--GSGSGSGSGSSDRVYVGNLS 508
R GGYGSER GYGSER GYGSQRSG GS+RSSY GSGSGSGSGS +R+YVGNLS
Sbjct: 206 RGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLS 265
Query: 509 WGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDG 688
WGVDDM LE+LF+EQGKVVEARVIYDR++GRSKGFGFVTL S QEV +AI+SLNGADLDG
Sbjct: 266 WGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDG 325
Query: 689 RQIRVSEAEAGPPRRQF* 742
RQIRVSEAEA PPR QF*
Sbjct: 326 RQIRVSEAEARPPRGQF* 343
Score = 77 bits (189), Expect = 1e-014
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
+++VGNLS+ VD L LF G V VIYD+ TGRS+GFGFVT+ + EV A
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 665 LNGADLDGRQIRVSEAEAGPP 727
NG + +GR +RV+ AGPP
Sbjct: 160 FNGYEFEGRPLRVN---AGPP 177
>TAIR9_protein||AT3G53460.2 | Symbols: CP29 | CP29; RNA binding / poly(U)
binding | chr3:19819738-19821423 REVERSE
Length = 343
Score = 208 bits (528), Expect = 5e-054
Identities = 110/138 (79%), Positives = 119/138 (86%), Gaps = 4/138 (2%)
Frame = +2
Query: 341 RSGGYGSER-SGYGSER-SGYGSQRSGRSGYGSERSSY--GSGSGSGSGSSDRVYVGNLS 508
R GGYGSER GYGSER GYGSQRSG GS+RSSY GSGSGSGSGS +R+YVGNLS
Sbjct: 206 RGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLS 265
Query: 509 WGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDG 688
WGVDDM LE+LF+EQGKVVEARVIYDR++GRSKGFGFVTL S QEV +AI+SLNGADLDG
Sbjct: 266 WGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDG 325
Query: 689 RQIRVSEAEAGPPRRQF* 742
RQIRVSEAEA PPR QF*
Sbjct: 326 RQIRVSEAEARPPRGQF* 343
>TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr2:15634980-15636331
REVERSE
Length = 290
Score = 177 bits (447), Expect = 1e-044
Identities = 88/115 (76%), Positives = 95/115 (82%)
Frame = +2
Query: 398 GSQRSGRSGYGSERSSYGSGSGSGSGSSDRVYVGNLSWGVDDMVLESLFSEQGKVVEARV 577
G R RS +GS S YG G GSG+GS +RVYVGNLSWGVDDM LESLFSEQGKVVEARV
Sbjct: 176 GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARV 235
Query: 578 IYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDGRQIRVSEAEAGPPRRQF* 742
IYDR++GRSKGFGFVT S QEV AI SL+GADLDGRQIRVSEAEA PPRRQ+*
Sbjct: 236 IYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY* 290
Score = 79 bits (194), Expect = 3e-015
Identities = 41/81 (50%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
+++VGNL + VD L LF G V VIYD+ TGRS+GFGFVT+ S EV A
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 665 LNGADLDGRQIRVSEAEAGPP 727
NG +LDGR +RV+ AGPP
Sbjct: 152 FNGYELDGRPLRVN---AGPP 169
>TAIR9_protein||AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding |
chr4:12766223-12767952 REVERSE
Length = 330
Score = 115 bits (286), Expect = 6e-026
Identities = 56/86 (65%), Positives = 67/86 (77%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
RVYVGNL W VD+ LE LFSE GKVVEARV+YDRETGRS+GFGFVT+ E+ AIS+
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 665 LNGADLDGRQIRVSEAEAGPPRRQF* 742
L+G +L+GR IRV+ AE PPRR +*
Sbjct: 305 LDGQNLEGRAIRVNVAEERPPRRGY* 330
>TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative / RNA-binding protein
1/2/3, putative / RNA-binding protein cp31, putative |
chr5:20452677-20453965 REVERSE
Length = 290
Score = 96 bits (238), Expect = 2e-020
Identities = 47/77 (61%), Positives = 60/77 (77%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R+YVGNL W VD LE LFSE GKVV+ARV+ DRETGRS+GFGFV + + EV AI++
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 665 LNGADLDGRQIRVSEAE 715
L+G +L+GR I+V+ AE
Sbjct: 268 LDGQNLEGRAIKVNVAE 284
>TAIR9_protein||AT2G21660.1 | Symbols: ATGRP7, CCR2, GR-RBP7, GRP7 | CCR2 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA
binding / single-stranded DNA binding | chr2:9265477-9266316 REVERSE
Length = 177
Score = 88 bits (217), Expect = 6e-018
Identities = 39/78 (50%), Positives = 56/78 (71%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L+W DD LE+ F++ G V+++++I DRETGRS+GFGFVT + + AI
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG DLDGR I V+EA++
Sbjct: 69 MNGQDLDGRSITVNEAQS 86
>TAIR9_protein||AT2G21660.2 | Symbols: ATGRP7, CCR2 | CCR2 (COLD, CIRCADIAN
RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr2:9265477-9266316 REVERSE
Length = 160
Score = 88 bits (217), Expect = 6e-018
Identities = 39/78 (50%), Positives = 56/78 (71%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L+W DD LE+ F++ G V+++++I DRETGRS+GFGFVT + + AI
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG DLDGR I V+EA++
Sbjct: 69 MNGQDLDGRSITVNEAQS 86
>TAIR9_protein||AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr3:8606762-8607677 REVERSE
Length = 137
Score = 87 bits (215), Expect = 1e-017
Identities = 52/115 (45%), Positives = 67/115 (58%), Gaps = 5/115 (4%)
Frame = +2
Query: 410 SGRSGYGSERSSYG---SGSGSGSGSSDRVYVGNLSWGVDDMVLESLFSEQGKVVEARVI 580
SG G +SS G S GS S +++VG LSWG DD L+ F+ G+V EA VI
Sbjct: 8 SGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVI 67
Query: 581 YDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDGRQIRVSEA--EAGPPRRQF 739
DRETGRS+GFGFV+ AI ++G +L+GRQIRV+ A + PR F
Sbjct: 68 ADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSF 122
>TAIR9_protein||AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA binding /
single-stranded DNA binding | chr3:8606762-8607677 REVERSE
Length = 137
Score = 87 bits (215), Expect = 1e-017
Identities = 52/115 (45%), Positives = 67/115 (58%), Gaps = 5/115 (4%)
Frame = +2
Query: 410 SGRSGYGSERSSYG---SGSGSGSGSSDRVYVGNLSWGVDDMVLESLFSEQGKVVEARVI 580
SG G +SS G S GS S +++VG LSWG DD L+ F+ G+V EA VI
Sbjct: 8 SGILRQGVSQSSNGPVTSMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVI 67
Query: 581 YDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDGRQIRVSEA--EAGPPRRQF 739
DRETGRS+GFGFV+ AI ++G +L+GRQIRV+ A + PR F
Sbjct: 68 ADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSF 122
>TAIR9_protein||AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | GR-RBP2
(GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding /
double-stranded DNA binding / single-stranded DNA binding |
chr4:8021314-8022065 FORWARD
Length = 159
Score = 86 bits (211), Expect = 3e-017
Identities = 41/82 (50%), Positives = 54/82 (65%)
Frame = +2
Query: 479 SDRVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAI 658
S ++++G LSWG DD L F+ G VV+A+VI DRETGRS+GFGFV T AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 659 SSLNGADLDGRQIRVSEAEAGP 724
S ++G +L+GR IRV+ A P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRP 115
>TAIR9_protein||AT4G13850.2 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA
binding / single-stranded DNA binding | chr4:8021314-8022065 FORWARD
Length = 154
Score = 86 bits (211), Expect = 3e-017
Identities = 41/82 (50%), Positives = 54/82 (65%)
Frame = +2
Query: 479 SDRVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAI 658
S ++++G LSWG DD L F+ G VV+A+VI DRETGRS+GFGFV T AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 659 SSLNGADLDGRQIRVSEAEAGP 724
S ++G +L+GR IRV+ A P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRP 115
>TAIR9_protein||AT4G13850.3 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA
binding / single-stranded DNA binding | chr4:8021314-8022065 FORWARD
Length = 145
Score = 86 bits (211), Expect = 3e-017
Identities = 41/82 (50%), Positives = 54/82 (65%)
Frame = +2
Query: 479 SDRVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAI 658
S ++++G LSWG DD L F+ G VV+A+VI DRETGRS+GFGFV T AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 659 SSLNGADLDGRQIRVSEAEAGP 724
S ++G +L+GR IRV+ A P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRP 115
>TAIR9_protein||AT4G13850.4 | Symbols: ATGRP2 | GR-RBP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA
binding / single-stranded DNA binding | chr4:8021314-8022065 FORWARD
Length = 130
Score = 86 bits (211), Expect = 3e-017
Identities = 41/82 (50%), Positives = 54/82 (65%)
Frame = +2
Query: 479 SDRVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAI 658
S ++++G LSWG DD L F+ G VV+A+VI DRETGRS+GFGFV T AI
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 659 SSLNGADLDGRQIRVSEAEAGP 724
S ++G +L+GR IRV+ A P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRP 115
>TAIR9_protein||AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | GR-RBP8;
RNA binding / nucleic acid binding / nucleotide binding |
chr4:18274166-18274958 REVERSE
Length = 170
Score = 79 bits (194), Expect = 3e-015
Identities = 36/78 (46%), Positives = 55/78 (70%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L+W +D L+ FS+ G V+++++I DRE+GRS+GFGFVT + + AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG +LDGR I V+EA++
Sbjct: 67 MNGKELDGRVITVNEAQS 84
>TAIR9_protein||AT4G39260.2 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding
/ nucleic acid binding / nucleotide binding | chr4:18274166-18274958
REVERSE
Length = 127
Score = 79 bits (194), Expect = 3e-015
Identities = 36/78 (46%), Positives = 55/78 (70%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L+W +D L+ FS+ G V+++++I DRE+GRS+GFGFVT + + AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG +LDGR I V+EA++
Sbjct: 67 MNGKELDGRVITVNEAQS 84
>TAIR9_protein||AT4G39260.3 | Symbols: CCR1, ATGRP8, GRP8 | GR-RBP8; RNA binding
/ nucleic acid binding / nucleotide binding | chr4:18274166-18274958
REVERSE
Length = 93
Score = 79 bits (194), Expect = 3e-015
Identities = 36/78 (46%), Positives = 55/78 (70%)
Frame = +2
Query: 485 RVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISS 664
R +VG L+W +D L+ FS+ G V+++++I DRE+GRS+GFGFVT + + AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 665 LNGADLDGRQIRVSEAEA 718
+NG +LDGR I V+EA++
Sbjct: 67 MNGKELDGRVITVNEAQS 84
>TAIR9_protein||AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich
RNA-binding protein 3); ATP binding / RNA binding |
chr5:24560870-24562152 FORWARD
Length = 310
Score = 79 bits (193), Expect = 4e-015
Identities = 36/79 (45%), Positives = 57/79 (72%)
Frame = +2
Query: 476 SSDRVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRA 655
SS ++++G +++ +D+ L F++ G+VV+ RVI DRETGRS+GFGFVT S + + A
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 656 ISSLNGADLDGRQIRVSEA 712
I +L+G DL GR ++V+ A
Sbjct: 98 IQALDGRDLHGRVVKVNYA 116
>TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding |
chr3:19421619-19422855 FORWARD
Length = 330
Score = 77 bits (189), Expect = 1e-014
Identities = 36/96 (37%), Positives = 55/96 (57%)
Frame = +2
Query: 428 GSERSSYGSGSGSGSGSSDRVYVGNLSWGVDDMVLESLFSEQGKVVEARVIYDRETGRSK 607
G E + SG R+YVGNL + + L +F E G VV+ +++YD+ T RS+
Sbjct: 98 GEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSR 157
Query: 608 GFGFVTLGSPQEVTRAISSLNGADLDGRQIRVSEAE 715
GFGFVT+GS +E A+ N + + GR ++V+ E
Sbjct: 158 GFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPE 193
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,890,131,440
Number of Sequences: 33410
Number of Extensions: 20890131440
Number of Successful Extensions: 664341349
Number of sequences better than 0.0: 0
|
