BLASTX 7.6.2
Query= UN42879 /QuerySize=754
(753 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|30679132|ref|NP_849288.1| uncharacterized protein [Arabidopsi... 68 1e-009
gi|297801948|ref|XP_002868858.1| hypothetical protein ARALYDRAFT... 65 9e-009
gi|297809907|ref|XP_002872837.1| hypothetical protein ARALYDRAFT... 64 2e-008
gi|42567518|ref|NP_195584.2| uncharacterized protein [Arabidopsi... 62 8e-008
gi|4467159|emb|CAB37528.1| hypothetical protein [Arabidopsis tha... 62 8e-008
gi|4490325|emb|CAB38607.1| hypothetical protein [Arabidopsis tha... 62 8e-008
gi|37806009|dbj|BAC99422.1| putative snRNP core protein SMX5d [O... 59 9e-007
gi|21553911|gb|AAM62994.1| snRNP core Sm protein Sm-X5-like prot... 59 9e-007
gi|3850571|gb|AAC72111.1| Similar to gb|U85207 snRNP core Sm pro... 59 9e-007
gi|18379085|ref|NP_563682.1| small nuclear ribonucleoprotein-lik... 59 9e-007
gi|224073260|ref|XP_002304049.1| predicted protein [Populus tric... 59 9e-007
gi|297607988|ref|NP_001061016.2| Os08g0154700 [Oryza sativa Japo... 59 9e-007
gi|226510250|ref|NP_001152698.1| snRNP core Sm protein Sm-X5-lik... 59 9e-007
gi|218200492|gb|EEC82919.1| hypothetical protein OsI_27848 [Oryz... 59 9e-007
gi|255567664|ref|XP_002524811.1| Speckle-type POZ protein, putat... 59 9e-007
gi|225436910|ref|XP_002274453.1| PREDICTED: hypothetical protein... 59 9e-007
gi|296086695|emb|CBI32330.3| unnamed protein product [Vitis vini... 59 9e-007
gi|116780108|gb|ABK21554.1| unknown [Picea sitchensis] 57 2e-006
gi|118483945|gb|ABK93861.1| unknown [Populus trichocarpa] 57 3e-006
>gi|30679132|ref|NP_849288.1| uncharacterized protein [Arabidopsis thaliana]
Length = 262
Score = 68 bits (165), Expect = 1e-009
Identities = 36/43 (83%), Positives = 37/43 (86%), Gaps = 1/43 (2%)
Frame = +2
Query: 65 DLPFAVGTDSSGELFNEANWASDVS-*ARRSRQVRRDSGREKE 190
DLPFAVGTDSSGELF EANWASDVS AR SR+ RRDSG EKE
Sbjct: 131 DLPFAVGTDSSGELFGEANWASDVSEAARNSRRERRDSGGEKE 173
>gi|297801948|ref|XP_002868858.1| hypothetical protein ARALYDRAFT_490637
[Arabidopsis lyrata subsp. lyrata]
Length = 326
Score = 65 bits (157), Expect = 9e-009
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = +3
Query: 414 TIILHGTREEEQALSGTLRWHKSGKSFNQEHLVNLYSPEY 533
T+ILH TREEEQA G +RW SGKSF++EHL +LYSPEY
Sbjct: 287 TVILHATREEEQASPGRMRWQDSGKSFDEEHLTSLYSPEY 326
>gi|297809907|ref|XP_002872837.1| hypothetical protein ARALYDRAFT_490324
[Arabidopsis lyrata subsp. lyrata]
Length = 259
Score = 64 bits (155), Expect = 2e-008
Identities = 34/42 (80%), Positives = 35/42 (83%), Gaps = 2/42 (4%)
Frame = +2
Query: 65 DLPFAVGTDSSGELFNEANWASDVS*ARRSRQVRRDSGREKE 190
DLPFAVGTDSSGELF EANWASDVS A +R RRDSG EKE
Sbjct: 130 DLPFAVGTDSSGELFGEANWASDVSEA--ARNSRRDSGGEKE 169
>gi|42567518|ref|NP_195584.2| uncharacterized protein [Arabidopsis thaliana]
Length = 326
Score = 62 bits (149), Expect = 8e-008
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 414 TIILHGTREEEQALSGTLRWHKSGKSFNQEHLVNLYSPEY 533
T+ILH TREEEQA +RW SGKSF++EHL +LYSPEY
Sbjct: 287 TVILHSTREEEQASPRRMRWQDSGKSFDEEHLTSLYSPEY 326
>gi|4467159|emb|CAB37528.1| hypothetical protein [Arabidopsis thaliana]
Length = 204
Score = 62 bits (149), Expect = 8e-008
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 414 TIILHGTREEEQALSGTLRWHKSGKSFNQEHLVNLYSPEY 533
T+ILH TREEEQA +RW SGKSF++EHL +LYSPEY
Sbjct: 165 TVILHSTREEEQASPRRMRWQDSGKSFDEEHLTSLYSPEY 204
>gi|4490325|emb|CAB38607.1| hypothetical protein [Arabidopsis thaliana]
Length = 217
Score = 62 bits (149), Expect = 8e-008
Identities = 27/40 (67%), Positives = 32/40 (80%)
Frame = +3
Query: 414 TIILHGTREEEQALSGTLRWHKSGKSFNQEHLVNLYSPEY 533
T+ILH TREEEQA +RW SGKSF++EHL +LYSPEY
Sbjct: 178 TVILHSTREEEQASPRRMRWQDSGKSFDEEHLTSLYSPEY 217
>gi|37806009|dbj|BAC99422.1| putative snRNP core protein SMX5d [Oryza sativa
Japonica Group]
Length = 288
Score = 59 bits (140), Expect = 9e-007
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RGTLHSVDQYLNIKLENTRV+DQ+K+PH
Sbjct: 221 RGTLHSVDQYLNIKLENTRVVDQDKYPH 248
>gi|21553911|gb|AAM62994.1| snRNP core Sm protein Sm-X5-like protein
[Arabidopsis thaliana]
Length = 93
Score = 59 bits (140), Expect = 9e-007
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RGTLHSVDQYLNIKLENTRV+DQ+K+PH
Sbjct: 26 RGTLHSVDQYLNIKLENTRVVDQDKYPH 53
>gi|3850571|gb|AAC72111.1| Similar to gb|U85207 snRNP core Sm protein homolog
Sm-X5 from Mus musculus. EST gb|AA612141 comes from this gene
[Arabidopsis thaliana]
Length = 114
Score = 59 bits (140), Expect = 9e-007
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RGTLHSVDQYLNIKLENTRV+DQ+K+PH
Sbjct: 47 RGTLHSVDQYLNIKLENTRVVDQDKYPH 74
>gi|18379085|ref|NP_563682.1| small nuclear ribonucleoprotein-like protein
[Arabidopsis thaliana]
Length = 93
Score = 59 bits (140), Expect = 9e-007
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RGTLHSVDQYLNIKLENTRV+DQ+K+PH
Sbjct: 26 RGTLHSVDQYLNIKLENTRVVDQDKYPH 53
>gi|224073260|ref|XP_002304049.1| predicted protein [Populus trichocarpa]
Length = 93
Score = 59 bits (140), Expect = 9e-007
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RGTLHSVDQYLNIKLENTRV+DQ+K+PH
Sbjct: 26 RGTLHSVDQYLNIKLENTRVVDQDKYPH 53
>gi|297607988|ref|NP_001061016.2| Os08g0154700 [Oryza sativa Japonica Group]
Length = 93
Score = 59 bits (140), Expect = 9e-007
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RGTLHSVDQYLNIKLENTRV+DQ+K+PH
Sbjct: 26 RGTLHSVDQYLNIKLENTRVVDQDKYPH 53
>gi|226510250|ref|NP_001152698.1| snRNP core Sm protein Sm-X5-like protein [Zea
mays]
Length = 93
Score = 59 bits (140), Expect = 9e-007
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RGTLHSVDQYLNIKLENTRV+DQ+K+PH
Sbjct: 26 RGTLHSVDQYLNIKLENTRVVDQDKYPH 53
>gi|218200492|gb|EEC82919.1| hypothetical protein OsI_27848 [Oryza sativa Indica
Group]
Length = 120
Score = 59 bits (140), Expect = 9e-007
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RGTLHSVDQYLNIKLENTRV+DQ+K+PH
Sbjct: 53 RGTLHSVDQYLNIKLENTRVVDQDKYPH 80
>gi|255567664|ref|XP_002524811.1| Speckle-type POZ protein, putative [Ricinus
communis]
Length = 500
Score = 59 bits (140), Expect = 9e-007
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RGTLHSVDQYLNIKLENTRV+DQ+K+PH
Sbjct: 433 RGTLHSVDQYLNIKLENTRVVDQDKYPH 460
>gi|225436910|ref|XP_002274453.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 93
Score = 59 bits (140), Expect = 9e-007
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RGTLHSVDQYLNIKLENTRV+DQ+K+PH
Sbjct: 26 RGTLHSVDQYLNIKLENTRVVDQDKYPH 53
>gi|296086695|emb|CBI32330.3| unnamed protein product [Vitis vinifera]
Length = 137
Score = 59 bits (140), Expect = 9e-007
Identities = 25/28 (89%), Positives = 28/28 (100%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RGTLHSVDQYLNIKLENTRV+DQ+K+PH
Sbjct: 70 RGTLHSVDQYLNIKLENTRVVDQDKYPH 97
>gi|116780108|gb|ABK21554.1| unknown [Picea sitchensis]
Length = 93
Score = 57 bits (136), Expect = 2e-006
Identities = 24/28 (85%), Positives = 28/28 (100%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RGTLHSVDQYLNIKLENTRV++Q+K+PH
Sbjct: 26 RGTLHSVDQYLNIKLENTRVVEQDKYPH 53
>gi|118483945|gb|ABK93861.1| unknown [Populus trichocarpa]
Length = 93
Score = 57 bits (135), Expect = 3e-006
Identities = 24/28 (85%), Positives = 27/28 (96%)
Frame = +2
Query: 281 RGTLHSVDQYLNIKLENTRVIDQNKFPH 364
RG LHSVDQYLNIKLENTRV+DQ+K+PH
Sbjct: 26 RGNLHSVDQYLNIKLENTRVVDQDKYPH 53
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,749,908,712,651
Number of Sequences: 15229318
Number of Extensions: 4749908712651
Number of Successful Extensions: 1126793398
Number of sequences better than 0.0: 0
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