BLASTX 7.6.2
Query= UN42945 /QuerySize=944
(943 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|A8XGH1|RPAB1_CAEBR DNA-directed RNA polymerases I, II, and II... 123 2e-027
sp|Q9N5K2|RPAB1_CAEEL DNA-directed RNA polymerases I, II, and II... 123 2e-027
sp|Q80UW8|RPAB1_MOUSE DNA-directed RNA polymerases I, II, and II... 120 2e-026
sp|B0BNE2|RPAB1_RAT DNA-directed RNA polymerases I, II, and III ... 120 2e-026
sp|Q5R587|RPAB1_PONAB DNA-directed RNA polymerases I, II, and II... 120 2e-026
sp|P19388|RPAB1_HUMAN DNA-directed RNA polymerases I, II, and II... 118 6e-026
sp|Q2T9T3|RPAB1_BOVIN DNA-directed RNA polymerases I, II, and II... 116 2e-025
sp|Q54EH2|RPAB1_DICDI DNA-directed RNA polymerases I, II, and II... 115 5e-025
sp|Q09191|RPAB1_SCHPO DNA-directed RNA polymerases I, II, and II... 106 2e-022
sp|Q6CA26|RPAB1_YARLI DNA-directed RNA polymerases I, II, and II... 106 4e-022
sp|Q6BIJ0|RPAB1_DEBHA DNA-directed RNA polymerases I, II, and II... 102 3e-021
sp|Q757H7|RPAB1_ASHGO DNA-directed RNA polymerases I, II, and II... 101 1e-020
sp|P20434|RPAB1_YEAST DNA-directed RNA polymerases I, II, and II... 101 1e-020
sp|Q6FQA6|RPAB1_CANGA DNA-directed RNA polymerases I, II, and II... 101 1e-020
sp|Q6CJ62|RPAB1_KLULA DNA-directed RNA polymerases I, II, and II... 100 2e-020
>sp|A8XGH1|RPAB1_CAEBR DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Caenorhabditis briggsae GN=rpb-5 PE=3 SV=1
Length = 211
Score = 123 bits (308), Expect = 2e-027
Identities = 59/79 (74%), Positives = 68/79 (86%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
EAE++VNI EH LVPEH V+T EEK LL RY +K++QLPRIQ DP+ARYFGL+RGQVV
Sbjct: 133 EAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVV 192
Query: 778 KIIRPSETAGRYVTYRYVV 834
KIIRPSETAGRY+TYR VV
Sbjct: 193 KIIRPSETAGRYITYRLVV 211
>sp|Q9N5K2|RPAB1_CAEEL DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Caenorhabditis elegans GN=rpb-5 PE=2 SV=1
Length = 211
Score = 123 bits (308), Expect = 2e-027
Identities = 59/79 (74%), Positives = 68/79 (86%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
EAE++VNI EH LVPEH V+T EEK LL RY +K++QLPRIQ DP+ARYFGL+RGQVV
Sbjct: 133 EAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFGLRRGQVV 192
Query: 778 KIIRPSETAGRYVTYRYVV 834
KIIRPSETAGRY+TYR VV
Sbjct: 193 KIIRPSETAGRYITYRLVV 211
>sp|Q80UW8|RPAB1_MOUSE DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Mus musculus GN=Polr2e PE=2 SV=1
Length = 210
Score = 120 bits (300), Expect = 2e-026
Identities = 56/127 (44%), Positives = 87/127 (68%), Gaps = 5/127 (3%)
Frame = +2
Query: 122 EEEIKRLYRIQKTLMQMLKDRGYFIADSEITMSLSQFVRKYGD-----NMKREDLVTLKA 286
EEE RL++I+KT+MQ+ DRGY + E+ +L +F ++GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 287 KRNDSSDQLYIFFPDEAKVGVKTMKVYTNRMKSENVYRAILVVQQNLTPFARTCISEISS 466
+D +DQ+++FFP+E KVG+KT+KVY RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 467 KFHLEVF 487
K+ LE F
Sbjct: 124 KYVLEQF 130
Score = 117 bits (291), Expect = 2e-025
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
+ E+L+NI EH LVPEH V+T EE LL RY ++E+QLPRIQ DP+ARYFG+KRGQVV
Sbjct: 132 QQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVV 191
Query: 778 KIIRPSETAGRYVTYRYV 831
KIIRPSETAGRY+TYR V
Sbjct: 192 KIIRPSETAGRYITYRLV 209
>sp|B0BNE2|RPAB1_RAT DNA-directed RNA polymerases I, II, and III subunit RPABC1
OS=Rattus norvegicus GN=Polr2e PE=2 SV=1
Length = 210
Score = 120 bits (300), Expect = 2e-026
Identities = 56/127 (44%), Positives = 87/127 (68%), Gaps = 5/127 (3%)
Frame = +2
Query: 122 EEEIKRLYRIQKTLMQMLKDRGYFIADSEITMSLSQFVRKYGD-----NMKREDLVTLKA 286
EEE RL++I+KT+MQ+ DRGY + E+ +L +F ++GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDLTVLVA 63
Query: 287 KRNDSSDQLYIFFPDEAKVGVKTMKVYTNRMKSENVYRAILVVQQNLTPFARTCISEISS 466
+D +DQ+++FFP+E KVG+KT+KVY RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 467 KFHLEVF 487
K+ LE F
Sbjct: 124 KYVLEQF 130
Score = 117 bits (291), Expect = 2e-025
Identities = 55/78 (70%), Positives = 65/78 (83%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
+ E+L+NI EH LVPEH V+T EE LL RY ++E+QLPRIQ DP+ARYFG+KRGQVV
Sbjct: 132 QQELLINITEHELVPEHVVMTKEEVTELLARYKLRESQLPRIQAGDPVARYFGIKRGQVV 191
Query: 778 KIIRPSETAGRYVTYRYV 831
KIIRPSETAGRY+TYR V
Sbjct: 192 KIIRPSETAGRYITYRLV 209
>sp|Q5R587|RPAB1_PONAB DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Pongo abelii GN=POLR2E PE=2 SV=1
Length = 210
Score = 120 bits (299), Expect = 2e-026
Identities = 56/127 (44%), Positives = 87/127 (68%), Gaps = 5/127 (3%)
Frame = +2
Query: 122 EEEIKRLYRIQKTLMQMLKDRGYFIADSEITMSLSQFVRKYGD-----NMKREDLVTLKA 286
EEE RL++I+KT+MQ+ DRGY + E+ +L +F ++GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFRAQFGDKPSEGRPRRTDLTVLVA 63
Query: 287 KRNDSSDQLYIFFPDEAKVGVKTMKVYTNRMKSENVYRAILVVQQNLTPFARTCISEISS 466
+D +DQ+++FFP+E KVG+KT+KVY RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 467 KFHLEVF 487
K+ LE F
Sbjct: 124 KYILEQF 130
Score = 116 bits (290), Expect = 2e-025
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
+ E+L+NI EH LVPEH V+T EE LL RY ++E QLPRIQ DP+ARYFG+KRGQVV
Sbjct: 132 QQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVV 191
Query: 778 KIIRPSETAGRYVTYRYV 831
KIIRPSETAGRY+TYR V
Sbjct: 192 KIIRPSETAGRYITYRLV 209
>sp|P19388|RPAB1_HUMAN DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Homo sapiens GN=POLR2E PE=1 SV=4
Length = 210
Score = 118 bits (295), Expect = 6e-026
Identities = 56/127 (44%), Positives = 86/127 (67%), Gaps = 5/127 (3%)
Frame = +2
Query: 122 EEEIKRLYRIQKTLMQMLKDRGYFIADSEITMSLSQFVRKYGD-----NMKREDLVTLKA 286
EEE RL++I+KT+MQ+ DRGY + E+ +L +F + GD +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDLTVLVA 63
Query: 287 KRNDSSDQLYIFFPDEAKVGVKTMKVYTNRMKSENVYRAILVVQQNLTPFARTCISEISS 466
+D +DQ+++FFP+E KVG+KT+KVY RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 467 KFHLEVF 487
K+ LE F
Sbjct: 124 KYILEQF 130
Score = 116 bits (290), Expect = 2e-025
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
+ E+L+NI EH LVPEH V+T EE LL RY ++E QLPRIQ DP+ARYFG+KRGQVV
Sbjct: 132 QQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVV 191
Query: 778 KIIRPSETAGRYVTYRYV 831
KIIRPSETAGRY+TYR V
Sbjct: 192 KIIRPSETAGRYITYRLV 209
>sp|Q2T9T3|RPAB1_BOVIN DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Bos taurus GN=POLR2E PE=2 SV=1
Length = 210
Score = 116 bits (290), Expect = 2e-025
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
+ E+L+NI EH LVPEH V+T EE LL RY ++E QLPRIQ DP+ARYFG+KRGQVV
Sbjct: 132 QQELLINITEHELVPEHVVMTKEEVTELLARYKLRENQLPRIQAGDPVARYFGIKRGQVV 191
Query: 778 KIIRPSETAGRYVTYRYV 831
KIIRPSETAGRY+TYR V
Sbjct: 192 KIIRPSETAGRYITYRLV 209
Score = 115 bits (286), Expect = 7e-025
Identities = 54/127 (42%), Positives = 85/127 (66%), Gaps = 5/127 (3%)
Frame = +2
Query: 122 EEEIKRLYRIQKTLMQMLKDRGYFIADSEITMSLSQFVRKYG-----DNMKREDLVTLKA 286
EEE RL++I+KT+MQ+ DRGY + + +L +F ++G +R DL L A
Sbjct: 4 EEETYRLWKIRKTIMQLCHDRGYLVTQDGLDQTLEEFKAQFGGKPSEGRPRRTDLTVLVA 63
Query: 287 KRNDSSDQLYIFFPDEAKVGVKTMKVYTNRMKSENVYRAILVVQQNLTPFARTCISEISS 466
+D +DQ+++FFP+E KVG+KT+KVY RM+ EN+ RA++VVQQ +TP A+ + +++
Sbjct: 64 HNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLVDMAP 123
Query: 467 KFHLEVF 487
K+ LE F
Sbjct: 124 KYILEQF 130
>sp|Q54EH2|RPAB1_DICDI DNA-directed RNA polymerases I, II, and III subunit
rpabc1 OS=Dictyostelium discoideum GN=polr2e PE=3 SV=2
Length = 197
Score = 115 bits (287), Expect = 5e-025
Identities = 55/79 (69%), Positives = 64/79 (81%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
EAE+LVNI H LVP+H +LT EEK LL RY +KE+QLPRIQ DP+ARY+GL RG VV
Sbjct: 119 EAELLVNITHHQLVPKHILLTKEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVV 178
Query: 778 KIIRPSETAGRYVTYRYVV 834
KI+RPSETAGRY+TYR V
Sbjct: 179 KIVRPSETAGRYITYRLCV 197
>sp|Q09191|RPAB1_SCHPO DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Schizosaccharomyces pombe GN=rpb5 PE=1 SV=1
Length = 210
Score = 106 bits (264), Expect = 2e-022
Identities = 48/76 (63%), Positives = 65/76 (85%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
E++++VNI H LVP+H +L+ +EKK LL+RY ++ETQLPRIQ+ DP+ARY GLKRG+VV
Sbjct: 132 ESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLPRIQLADPVARYLGLKRGEVV 191
Query: 778 KIIRPSETAGRYVTYR 825
KI+R SET+GRY +YR
Sbjct: 192 KIVRRSETSGRYNSYR 207
>sp|Q6CA26|RPAB1_YARLI DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Yarrowia lipolytica GN=RPB5 PE=3 SV=1
Length = 212
Score = 106 bits (262), Expect = 4e-022
Identities = 51/76 (67%), Positives = 62/76 (81%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
E ++LVNI +HVLVP H L+ EKK LLERY +KE+QLPRIQ DP+ARY GL+RGQ+V
Sbjct: 134 ETDLLVNITKHVLVPTHIKLSGAEKKFLLERYRLKESQLPRIQREDPVARYLGLRRGQIV 193
Query: 778 KIIRPSETAGRYVTYR 825
KIIR SET+GRY +YR
Sbjct: 194 KIIRRSETSGRYASYR 209
>sp|Q6BIJ0|RPAB1_DEBHA DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Debaryomyces hansenii GN=RPB5 PE=3 SV=1
Length = 214
Score = 102 bits (254), Expect = 3e-021
Identities = 49/76 (64%), Positives = 60/76 (78%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
E +++VNI H LVP+H L +EKK LLERY +KE+QLPRIQ DP+ RY GLKRG+VV
Sbjct: 136 EGDLVVNITHHDLVPKHIKLARDEKKELLERYRLKESQLPRIQREDPVGRYLGLKRGEVV 195
Query: 778 KIIRPSETAGRYVTYR 825
KIIR SET+GRY +YR
Sbjct: 196 KIIRRSETSGRYASYR 211
>sp|Q757H7|RPAB1_ASHGO DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Ashbya gossypii GN=RPB5 PE=3 SV=1
Length = 215
Score = 101 bits (250), Expect = 1e-020
Identities = 49/76 (64%), Positives = 60/76 (78%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
E ++VNI H LVP+H L+ EEKK LL+RY +KE+QLPRIQ DP+A Y GLKRG+VV
Sbjct: 137 ETALVVNITHHELVPKHIKLSDEEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVV 196
Query: 778 KIIRPSETAGRYVTYR 825
KIIR SET+GRY +YR
Sbjct: 197 KIIRKSETSGRYASYR 212
>sp|P20434|RPAB1_YEAST DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Saccharomyces cerevisiae GN=RPB5 PE=1 SV=1
Length = 215
Score = 101 bits (250), Expect = 1e-020
Identities = 48/76 (63%), Positives = 62/76 (81%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
EA ++VNI H LVP+H L+++EK+ LL+RY +KE+QLPRIQ DP+A Y GLKRG+VV
Sbjct: 137 EAALVVNITHHELVPKHIRLSSDEKRELLKRYRLKESQLPRIQRADPVALYLGLKRGEVV 196
Query: 778 KIIRPSETAGRYVTYR 825
KIIR SET+GRY +YR
Sbjct: 197 KIIRKSETSGRYASYR 212
>sp|Q6FQA6|RPAB1_CANGA DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Candida glabrata GN=RPB5 PE=3 SV=1
Length = 215
Score = 101 bits (249), Expect = 1e-020
Identities = 50/76 (65%), Positives = 59/76 (77%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
EA ++VNI H LVP+H L EEK LL+RY +KE+QLPRIQ DP+A Y GLKRG+VV
Sbjct: 137 EAALVVNITHHDLVPKHIRLNEEEKAELLKRYRLKESQLPRIQRADPVALYLGLKRGEVV 196
Query: 778 KIIRPSETAGRYVTYR 825
KIIR SETAGRY +YR
Sbjct: 197 KIIRKSETAGRYASYR 212
>sp|Q6CJ62|RPAB1_KLULA DNA-directed RNA polymerases I, II, and III subunit
RPABC1 OS=Kluyveromyces lactis GN=RPB5 PE=3 SV=1
Length = 215
Score = 100 bits (247), Expect = 2e-020
Identities = 48/76 (63%), Positives = 60/76 (78%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
EA ++VNI H LVP+H L+ EKK LL+RY +KE+QLPRIQ DP+A Y GLKRG+V+
Sbjct: 137 EASLVVNITHHELVPKHIRLSEAEKKELLKRYRLKESQLPRIQRMDPVALYLGLKRGEVI 196
Query: 778 KIIRPSETAGRYVTYR 825
KIIR SET+GRY +YR
Sbjct: 197 KIIRKSETSGRYASYR 212
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,931,892,944
Number of Sequences: 518415
Number of Extensions: 164931892944
Number of Successful Extensions: 1021520109
Number of sequences better than 0.0: 0
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