BLASTX 7.6.2
Query= UN42945 /QuerySize=944
(943 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G22320.1 | Symbols: ATRPABC24.3, RPB5A, NRPB5,... 233 2e-061
TAIR9_protein||AT5G57980.1 | Symbols: RPB5C | RPB5C (RNA POLYMER... 96 3e-020
TAIR9_protein||AT2G41340.1 | Symbols: RPB5D | RPB5D (RNA POLYMER... 85 7e-017
TAIR9_protein||AT3G57080.1 | Symbols: RPB5B, NRPE5 | NRPE5; DNA ... 80 1e-015
TAIR9_protein||AT3G54490.1 | Symbols: RPB5E | RPB5E (RNA POLYMER... 74 1e-013
TAIR9_protein||AT3G16680.1 | Symbols: | DNA binding / DNA-direc... 51 1e-006
>TAIR9_protein||AT3G22320.1 | Symbols: ATRPABC24.3, RPB5A, NRPB5, NRPD5 | NRPB5;
DNA binding / DNA-directed RNA polymerase | chr3:7891045-7892094
REVERSE
Length = 206
Score = 233 bits (592), Expect = 2e-061
Identities = 114/125 (91%), Positives = 123/125 (98%)
Frame = +2
Query: 116 LTEEEIKRLYRIQKTLMQMLKDRGYFIADSEITMSLSQFVRKYGDNMKREDLVTLKAKRN 295
LTEEE+KRLYRIQKTLMQML+DRGYFIADSE+TM+ QF+RK+GDNMKREDLVTLKAKRN
Sbjct: 2 LTEEELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRN 61
Query: 296 DSSDQLYIFFPDEAKVGVKTMKVYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFH 475
D+SDQLYIFFPDEAKVGVKTMK+YTNRMKSENV+RAILVVQQNLTPFARTCISEISSKFH
Sbjct: 62 DNSDQLYIFFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFARTCISEISSKFH 121
Query: 476 LEVFQ 490
LEVFQ
Sbjct: 122 LEVFQ 126
Score = 158 bits (399), Expect = 5e-039
Identities = 79/80 (98%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV
Sbjct: 127 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 186
Query: 778 KIIRPSETAGRYVTYRYVV* 837
KIIRPSETAGRYVTYRYVV*
Sbjct: 187 KIIRPSETAGRYVTYRYVV* 206
>TAIR9_protein||AT5G57980.1 | Symbols: RPB5C | RPB5C (RNA POLYMERASE II FIFTH
LARGEST SUBUNIT, C); DNA binding / DNA-directed RNA polymerase |
chr5:23469050-23469768 REVERSE
Length = 211
Score = 96 bits (237), Expect = 3e-020
Identities = 48/80 (60%), Positives = 59/80 (73%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVV 777
EAE++ NI EH LV ++ VL + KK LL YTV++TQLPRI VTDP+ARY+GLKRGQVV
Sbjct: 132 EAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYGLKRGQVV 191
Query: 778 KIIRPSETAGRYVTYRYVV* 837
KI R T+ Y TYR+ V*
Sbjct: 192 KIRRSDATSLDYYTYRFAV* 211
Score = 86 bits (212), Expect = 2e-017
Identities = 42/127 (33%), Positives = 81/127 (63%), Gaps = 4/127 (3%)
Frame = +2
Query: 122 EEEIKRLYRIQKTLMQMLKDRGYFIADSEITMSLSQFVRKYGDNM---KREDLVTLKAKR 292
++EI R++++++T++QML+DRGY I +S++ + +FV+++ M +E L K
Sbjct: 5 DDEITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKG 64
Query: 293 NDSSDQLYIFFPDEAKVGVKTM-KVYTNRMKSENVYRAILVVQQNLTPFARTCISEISSK 469
+ +D++Y+F+P+ KVGV + K +M+ + V+R I+VV +T AR +SE++
Sbjct: 65 PNPADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKM 124
Query: 470 FHLEVFQ 490
+EVF+
Sbjct: 125 LTIEVFE 131
>TAIR9_protein||AT2G41340.1 | Symbols: RPB5D | RPB5D (RNA POLYMERASE II FIFTH
LARGEST SUBUNIT, D); DNA binding / DNA-directed RNA polymerase |
chr2:17229026-17230442 FORWARD
Length = 219
Score = 85 bits (208), Expect = 7e-017
Identities = 37/76 (48%), Positives = 58/76 (76%)
Frame = +1
Query: 604 EMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKI 783
++LVN+ +HVL P+HQVL +EK++LL++++++E QLPR+ DPI RY+GL+ GQV+K+
Sbjct: 142 DLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKV 201
Query: 784 IRPSETAGRYVTYRYV 831
E + +VTYR V
Sbjct: 202 TYKDELSESHVTYRCV 217
Score = 65 bits (157), Expect = 6e-011
Identities = 43/124 (34%), Positives = 71/124 (57%), Gaps = 5/124 (4%)
Frame = +2
Query: 128 EIKRLYRIQKTLMQMLKDRGYFIADSEITMSLSQFVRKYGDNMKREDLVTLKAK-RNDSS 304
E + Y ++T M+ML+DRGY ++D +I +SL QF YG++ DL+ + AK R DSS
Sbjct: 20 ECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEH-PDVDLLRISAKHRFDSS 78
Query: 305 DQLYIFFPDEAKVGVKTMKVY-TNRMKSENVYRAILVVQQNLTPFARTCISEISSKFHLE 481
++ + F V V M+V + + EN+ ILV+Q ++T A + S F +E
Sbjct: 79 KKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFS--FKVE 136
Query: 482 VFQV 493
+F++
Sbjct: 137 LFEI 140
>TAIR9_protein||AT3G57080.1 | Symbols: RPB5B, NRPE5 | NRPE5; DNA binding /
DNA-directed RNA polymerase | chr3:21125878-21127470 FORWARD
Length = 223
Score = 80 bits (197), Expect = 1e-015
Identities = 38/76 (50%), Positives = 54/76 (71%)
Frame = +1
Query: 604 EMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKI 783
++LVNI +H L P+HQVL EEK TLL++++++E QLPRI D I RY+GL++GQVVK+
Sbjct: 146 DLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIVRYYGLEKGQVVKV 205
Query: 784 IRPSETAGRYVTYRYV 831
E +V +R V
Sbjct: 206 NYRGELTESHVAFRCV 221
Score = 62 bits (150), Expect = 4e-010
Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Frame = +2
Query: 116 LTEEEIKRLYRIQKTLMQMLKDRGYFIADSEITMSLSQFVRKYGDNMKREDLVTLKAKRN 295
L+ EE R Y ++ +QML+DRGY ++D +I +SL F YG+ + L R+
Sbjct: 20 LSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLRISALHRS 79
Query: 296 DSSDQLYIFFPDEAKVGVKTMK-VYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKF 472
DS+ ++ I F + V V ++ V + + E + ILV+Q ++T A I S F
Sbjct: 80 DSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAIELFS--F 137
Query: 473 HLEVFQV 493
+E+FQ+
Sbjct: 138 KVEIFQI 144
>TAIR9_protein||AT3G54490.1 | Symbols: RPB5E | RPB5E (RNA POLYMERASE II FIFTH
LARGEST SUBUNIT, E); DNA binding / DNA-directed RNA polymerase |
chr3:20173673-20175297 FORWARD
Length = 234
Score = 74 bits (180), Expect = 1e-013
Identities = 33/78 (42%), Positives = 52/78 (66%)
Frame = +1
Query: 604 EMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQVVKI 783
++LVNI +H+ P+ ++L EEK+ LL ++ +++ QLP +Q D RY+GLK+ QVVKI
Sbjct: 157 DLLVNITKHIQQPKIEILNKEEKEQLLRKHALEDKQLPYLQEKDSFVRYYGLKKKQVVKI 216
Query: 784 IRPSETAGRYVTYRYVV* 837
E G +VTYR ++*
Sbjct: 217 TYSKEPVGDFVTYRCII* 234
Score = 56 bits (133), Expect = 3e-008
Identities = 32/123 (26%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Frame = +2
Query: 128 EIKRLYRIQKTLMQMLKDRGYFIADSEITMSLSQFVRKYGDNMKREDLVTLKAKRNDSSD 307
E KR Y + T +ML+DRGY + ++E++++LS+F +G+ + E L R+D
Sbjct: 35 ESKRFYLARTTAFEMLRDRGYEVNEAELSLTLSEFRSVFGEKPELERLRICVPLRSDPKK 94
Query: 308 QLYIFFPDEAKVGVKTMK-VYTNRMKSENVYRAILVVQQNLTPFARTCISEISSKFHLEV 484
++ + F + VK+++ ++ + ++ ILV+Q + FA+ ++ + F +E
Sbjct: 95 KILVVFMGTEPITVKSVRALHIQISNNVGLHAMILVLQSKMNHFAQKALT--TFPFTVET 152
Query: 485 FQV 493
F +
Sbjct: 153 FPI 155
>TAIR9_protein||AT3G16680.1 | Symbols: | DNA binding / DNA-directed RNA
polymerase | chr3:5683697-5684130 FORWARD
Length = 88
Score = 51 bits (120), Expect = 1e-006
Identities = 22/31 (70%), Positives = 26/31 (83%)
Frame = +1
Query: 598 EAEMLVNIKEHVLVPEHQVLTTEEKKTLLER 690
E E++VN+KEHV VPEHQ LTTEEK+ LER
Sbjct: 48 EKELIVNVKEHVFVPEHQALTTEEKQKFLER 78
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,024,675,335
Number of Sequences: 33410
Number of Extensions: 21024675335
Number of Successful Extensions: 664527818
Number of sequences better than 0.0: 0
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