BLASTX 7.6.2
Query= UN43618 /QuerySize=962
(961 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G49430.1 | Symbols: SRp34a | SRp34a (Ser/Arg-r... 167 1e-041
TAIR9_protein||AT3G49430.2 | Symbols: SRp34a | SRp34a (Ser/Arg-r... 167 1e-041
TAIR9_protein||AT1G09140.1 | Symbols: | SF2/ASF-like splicing m... 142 4e-034
TAIR9_protein||AT1G09140.2 | Symbols: | SF2/ASF-like splicing m... 142 4e-034
TAIR9_protein||AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 136 3e-032
TAIR9_protein||AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 136 3e-032
TAIR9_protein||AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 136 3e-032
TAIR9_protein||AT4G02430.2 | Symbols: | pre-mRNA splicing facto... 133 2e-031
TAIR9_protein||AT4G02430.1 | Symbols: | pre-mRNA splicing facto... 133 2e-031
TAIR9_protein||AT2G37340.1 | Symbols: RSZ33, ATRSZ33 | RSZ33; nu... 66 3e-011
TAIR9_protein||AT3G53500.2 | Symbols: RSZ32 | zinc knuckle (CCHC... 66 3e-011
TAIR9_protein||AT3G61860.1 | Symbols: ATRSP31, RSP31 | RSP31; RN... 62 5e-010
TAIR9_protein||AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22 | SR... 62 5e-010
TAIR9_protein||AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22 | SR... 62 5e-010
TAIR9_protein||AT2G46610.1 | Symbols: | arginine/serine-rich sp... 57 2e-008
TAIR9_protein||AT4G12640.1 | Symbols: | RNA recognition motif (... 56 3e-008
TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotei... 48 7e-006
>TAIR9_protein||AT3G49430.1 | Symbols: SRp34a | SRp34a (Ser/Arg-rich protein
34a); RNA binding / nucleic acid binding / nucleotide binding |
chr3:18332668-18334829 FORWARD
Length = 301
Score = 167 bits (422), Expect = 1e-041
Identities = 78/85 (91%), Positives = 79/85 (92%)
Frame = -1
Query: 499 MSGRFSRSIYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAED 320
MSGRFSRSIYVGNLPGDIRE EIED+FYKYGRIVDIELKVPPRPPCYCFVEFEH RDAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 319 AIDGRDGYNFDGSRLRVELAHGDRG 245
AI GRDGYN DG RLRVELAHG RG
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRG 85
>TAIR9_protein||AT3G49430.2 | Symbols: SRp34a | SRp34a (Ser/Arg-rich protein
34a); RNA binding / nucleic acid binding / nucleotide binding |
chr3:18332668-18334617 FORWARD
Length = 298
Score = 167 bits (422), Expect = 1e-041
Identities = 78/85 (91%), Positives = 79/85 (92%)
Frame = -1
Query: 499 MSGRFSRSIYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAED 320
MSGRFSRSIYVGNLPGDIRE EIED+FYKYGRIVDIELKVPPRPPCYCFVEFEH RDAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 319 AIDGRDGYNFDGSRLRVELAHGDRG 245
AI GRDGYN DG RLRVELAHG RG
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRG 85
>TAIR9_protein||AT1G09140.1 | Symbols: | SF2/ASF-like splicing modulator
(SRP30) | chr1:2942887-2945818 REVERSE
Length = 269
Score = 142 bits (357), Expect = 4e-034
Identities = 65/84 (77%), Positives = 75/84 (89%)
Frame = -1
Query: 499 MSGRFSRSIYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAED 320
MS R++R+IYVGNLPGDIR+ E+EDLFYKYG IVDI+LK+PPRPP Y FVEFE PRDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 319 AIDGRDGYNFDGSRLRVELAHGDR 248
AI GRDGY+FDG RLRVE+AHG R
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGR 84
>TAIR9_protein||AT1G09140.2 | Symbols: | SF2/ASF-like splicing modulator
(SRP30) | chr1:2943528-2945818 REVERSE
Length = 257
Score = 142 bits (357), Expect = 4e-034
Identities = 65/84 (77%), Positives = 75/84 (89%)
Frame = -1
Query: 499 MSGRFSRSIYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAED 320
MS R++R+IYVGNLPGDIR+ E+EDLFYKYG IVDI+LK+PPRPP Y FVEFE PRDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 319 AIDGRDGYNFDGSRLRVELAHGDR 248
AI GRDGY+FDG RLRVE+AHG R
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGR 84
>TAIR9_protein||AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-629583 FORWARD
Length = 304
Score = 136 bits (341), Expect = 3e-032
Identities = 64/84 (76%), Positives = 71/84 (84%)
Frame = -1
Query: 499 MSGRFSRSIYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAED 320
MS R SR++YVGNLPGDIRE E+EDLF KYG +V I+LKVPPRPP Y FVEF+ RDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 319 AIDGRDGYNFDGSRLRVELAHGDR 248
AI GRDGY+FDG RLRVELAHG R
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGR 84
>TAIR9_protein||AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-628995 FORWARD
Length = 286
Score = 136 bits (341), Expect = 3e-032
Identities = 64/84 (76%), Positives = 71/84 (84%)
Frame = -1
Query: 499 MSGRFSRSIYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAED 320
MS R SR++YVGNLPGDIRE E+EDLF KYG +V I+LKVPPRPP Y FVEF+ RDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 319 AIDGRDGYNFDGSRLRVELAHGDR 248
AI GRDGY+FDG RLRVELAHG R
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGR 84
>TAIR9_protein||AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-629583 FORWARD
Length = 304
Score = 136 bits (341), Expect = 3e-032
Identities = 64/84 (76%), Positives = 71/84 (84%)
Frame = -1
Query: 499 MSGRFSRSIYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAED 320
MS R SR++YVGNLPGDIRE E+EDLF KYG +V I+LKVPPRPP Y FVEF+ RDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 319 AIDGRDGYNFDGSRLRVELAHGDR 248
AI GRDGY+FDG RLRVELAHG R
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGR 84
>TAIR9_protein||AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative /
SR1 protein, putative | chr4:1069186-1071313 FORWARD
Length = 279
Score = 133 bits (334), Expect = 2e-031
Identities = 63/84 (75%), Positives = 70/84 (83%)
Frame = -1
Query: 499 MSGRFSRSIYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAED 320
MS R SR+IYVGNLPGDIRE E+EDLF KYG +V I+LK+PPRPP Y FVEFE RDA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 319 AIDGRDGYNFDGSRLRVELAHGDR 248
AI GRDGY+FDG LRVELAHG R
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGR 84
>TAIR9_protein||AT4G02430.1 | Symbols: | pre-mRNA splicing factor, putative /
SR1 protein, putative | chr4:1069186-1070543 FORWARD
Length = 179
Score = 133 bits (334), Expect = 2e-031
Identities = 63/84 (75%), Positives = 70/84 (83%)
Frame = -1
Query: 499 MSGRFSRSIYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAED 320
MS R SR+IYVGNLPGDIRE E+EDLF KYG +V I+LK+PPRPP Y FVEFE RDA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 319 AIDGRDGYNFDGSRLRVELAHGDR 248
AI GRDGY+FDG LRVELAHG R
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGR 84
>TAIR9_protein||AT2G37340.1 | Symbols: RSZ33, ATRSZ33 | RSZ33; nucleic acid
binding / nucleotide binding / zinc ion binding |
chr2:15670372-15672331 REVERSE
Length = 291
Score = 66 bits (160), Expect = 3e-011
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Frame = -1
Query: 475 IYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAEDAIDGRDGY 296
+YVG L R ++E LF +YGR+ D+++K Y FVEF PRDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD-----YAFVEFGDPRDADDARHYLDGR 67
Query: 295 NFDGSRLRVELAHG 254
+FDGSR+ VE + G
Sbjct: 68 DFDGSRITVEFSRG 81
>TAIR9_protein||AT3G53500.2 | Symbols: RSZ32 | zinc knuckle (CCHC-type) family
protein | chr3:19834557-19836507 REVERSE
Length = 285
Score = 66 bits (159), Expect = 3e-011
Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Frame = -1
Query: 475 IYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAEDAIDGRDGY 296
+YVG L R ++E LF +YGR+ D+++K Y FVEF PRDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD-----YAFVEFSDPRDADDARYYLDGR 67
Query: 295 NFDGSRLRVELAHG 254
+FDGSR+ VE + G
Sbjct: 68 DFDGSRITVEASRG 81
>TAIR9_protein||AT3G61860.1 | Symbols: ATRSP31, RSP31 | RSP31; RNA binding /
nucleic acid binding / nucleotide binding | chr3:22900311-22902159
REVERSE
Length = 265
Score = 62 bits (149), Expect = 5e-010
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Frame = -1
Query: 481 RSIYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAEDAIDGRD 302
R ++VGN + R+S++E LF KYGR+ +++K Y FV FE RDAEDAI D
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMK-----SGYAFVYFEDERDAEDAIRKLD 56
Query: 301 GYNF--DGSRLRVELAHGDRG 245
+ F + RL VE A G+RG
Sbjct: 57 NFPFGYEKRRLSVEWAKGERG 77
>TAIR9_protein||AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22 | SRZ-22; protein
binding | chr4:15306983-15308064 FORWARD
Length = 201
Score = 62 bits (149), Expect = 5e-010
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Frame = -1
Query: 475 IYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAEDAI---DGR 305
+YVGNL + E E+ED F +G + + V RPP Y F++FE PRDA DAI DG+
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSV--WVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 304 DGYNFDGSRLRVELAHGDRG 245
+G+ + S R E G RG
Sbjct: 62 NGWRVEQSHNRGERGGGGRG 81
>TAIR9_protein||AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22 | SRZ-22; protein
binding | chr4:15306983-15308064 FORWARD
Length = 201
Score = 62 bits (149), Expect = 5e-010
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Frame = -1
Query: 475 IYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAEDAI---DGR 305
+YVGNL + E E+ED F +G + + V RPP Y F++FE PRDA DAI DG+
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSV--WVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 304 DGYNFDGSRLRVELAHGDRG 245
+G+ + S R E G RG
Sbjct: 62 NGWRVEQSHNRGERGGGGRG 81
>TAIR9_protein||AT2G46610.1 | Symbols: | arginine/serine-rich splicing factor,
putative | chr2:19136769-19138492 REVERSE
Length = 251
Score = 57 bits (135), Expect = 2e-008
Identities = 37/84 (44%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Frame = -1
Query: 481 RSIYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAEDAIDGRD 302
R +YVGN D R S++E LF K+GR+ +++K Y FV FE RDAEDAI D
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMK-----SGYAFVYFEDERDAEDAIRRTD 56
Query: 301 GYNFDGSR--LRVELA---HGDRG 245
F R L VE A G+RG
Sbjct: 57 NTTFGYGRRKLSVEWAKDFQGERG 80
>TAIR9_protein||AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:7462697-7467630 FORWARD
Length = 824
Score = 56 bits (133), Expect = 3e-008
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = -1
Query: 484 SRSIYVGNLPGDIRESEIEDLFYKYGRIVDIELKVPPRPPCYCFVEFEHPRDAEDAIDGR 305
SR ++VGNLP I E E+ D F ++G + + + P R Y FV F H DA AI+
Sbjct: 22 SRHLWVGNLPHGILERELADRFLRFGELESLAFQ-PGR--SYAFVNFNHDEDAFAAIESL 78
Query: 304 DGYNFDGSRLRVELAHGDR 248
G+ G+ LR+E A ++
Sbjct: 79 QGFPLSGNPLRIEFAKAEK 97
>TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative / RNA-binding protein
1/2/3, putative / RNA-binding protein cp31, putative |
chr5:20452677-20453965 REVERSE
Length = 290
Score = 48 bits (113), Expect = 7e-006
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = -1
Query: 475 IYVGNLPGDIRESEIEDLFYKYGRIVDIEL---KVPPRPPCYCFVEFEHPRDAEDAIDGR 305
IYVGNLP D+ +E LF ++G++VD + + R + FV+ + + AI
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 304 DGYNFDGSRLRVELA 260
DG N +G ++V +A
Sbjct: 269 DGQNLEGRAIKVNVA 283
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,295,014,916
Number of Sequences: 33410
Number of Extensions: 21295014916
Number of Successful Extensions: 670053385
Number of sequences better than 0.0: 0
|
