BLASTX 7.6.2
Query= UN43728 /QuerySize=866
(865 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G18880.1 | Symbols: VEL2 | VEL2 ((VERNALIZATIO... 151 7e-037
TAIR9_protein||AT4G30200.1 | Symbols: VEL1 | Encodes a protein w... 146 2e-035
TAIR9_protein||AT4G30200.3 | Symbols: VEL1 | Encodes a protein w... 146 2e-035
TAIR9_protein||AT4G30200.2 | Symbols: VEL1 | Encodes a protein w... 146 2e-035
TAIR9_protein||AT5G57380.1 | Symbols: VIN3 | VIN3 (VERNALIZATION... 125 5e-029
TAIR9_protein||AT2G18870.1 | Symbols: VEL3 | VEL3 (VERNALIZATION... 114 7e-026
TAIR9_protein||AT3G24440.1 | Symbols: VRN5, VIL1 | VRN5 (VERNALI... 101 8e-022
>TAIR9_protein||AT2G18880.1 | Symbols: VEL2 | VEL2 ((VERNALIZATION5/VIN3-LIKE))
| chr2:8176386-8178788 FORWARD
Length = 530
Score = 151 bits (380), Expect = 7e-037
Identities = 82/153 (53%), Positives = 102/153 (66%)
Frame = -2
Query: 864 GLKEDKPSHHVDGCFHCVSCGKTNSLLECWKKQLLIAKETRSVDVLCYRLVLAQKLLKGT 685
GLKED PS +DGCF+CVSCGKTNS +EC KKQL+IA E R V V CYR++LA KLLKGT
Sbjct: 185 GLKEDTPSSDIDGCFNCVSCGKTNSKIECLKKQLIIANEERRVGVFCYRILLAHKLLKGT 244
Query: 684 EKYRKLSETVEEAVKSLETELCGPLTDLPSAMCRGNVNRLGSATKVKDLCSSALKSLQDT 505
+KY +SE VE+AV L+ E P++ LPS M RG VNRL A KVK CSSALK L
Sbjct: 245 KKYIIVSEEVEKAVMHLKNEFGVPISCLPSKMSRGLVNRLCCAEKVKKHCSSALKELDGL 304
Query: 504 KVLTRTLGEEEEEGEAAFVSSLSTKEEEEETVS 406
+ + G + E+ +S++ E EE+ S
Sbjct: 305 PLPSTIQGSMKIRIESVLATSVTFDIEAEESFS 337
Score = 111 bits (277), Expect = 6e-025
Identities = 58/117 (49%), Positives = 79/117 (67%), Gaps = 5/117 (4%)
Frame = -2
Query: 483 GEEEEEGEAAFVSSLSTKEEEEETV-----SEKAAVNGKSSTSCGFGLEDCVKIMRQLEC 319
G EE + VS+ + ++EE V + A + S SC FG E+CV ++RQLEC
Sbjct: 393 GVEELSVDEFIVSTKTLQDEEVAAVLLNMSNCNNANKMEKSGSCSFGFEECVNLIRQLEC 452
Query: 318 SGHVEKSFRQEFLTWYSLKASAQEINVVKTFVDAFQDDSVALAEQLVDTFSDCISRK 148
SG V+ FR++FLTWY LKA+ +E +VV+ FVD F+DD ALA+QL+DTFSDCI+RK
Sbjct: 453 SGQVKSDFRKKFLTWYCLKATDKEKHVVEIFVDTFKDDKEALAKQLIDTFSDCITRK 509
>TAIR9_protein||AT4G30200.1 | Symbols: VEL1 | Encodes a protein with similarity
to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain.
VEL1 is a part of a polycomb repressive complex (PRC2) that is involved
in epigenetic silencing of the FLC flowering locus. |
chr4:14786852-14789103 REVERSE
Length = 686
Score = 146 bits (367), Expect = 2e-035
Identities = 78/118 (66%), Positives = 89/118 (75%), Gaps = 3/118 (2%)
Frame = -2
Query: 864 GLKEDKPSHHVDGCFHCVSCGKTNSLLECWKKQLLIAKETRSVDVLCYRLVLAQKLLKGT 685
GL +DK S CF+CVSCGK NSLLECWKKQL IAKETR V+VLCYRL L QKLLK +
Sbjct: 195 GLGKDKQSEGC--CFYCVSCGKANSLLECWKKQLTIAKETRRVEVLCYRLFLVQKLLKSS 252
Query: 684 EKYRKLSETVEEAVKSLETELCGPLTDLPSAMCRGNVNRLGSATKVKDLCSSALKSLQ 511
KYR L E V+EAVK+LE ++ GPLT LP M RG VNRL S V+ LCSSAL+SL+
Sbjct: 253 TKYRNLCEVVDEAVKTLEADV-GPLTGLPMKMGRGIVNRLHSGPDVQKLCSSALESLE 309
Score = 113 bits (282), Expect = 2e-025
Identities = 55/84 (65%), Positives = 68/84 (80%), Gaps = 2/84 (2%)
Frame = -2
Query: 390 NGKSSTSCG--FGLEDCVKIMRQLECSGHVEKSFRQEFLTWYSLKASAQEINVVKTFVDA 217
NG S + G GLE CVKI+RQLECSGH++K+FRQ+FLTWYSL+A++QEI VVK F+D
Sbjct: 580 NGDHSANGGTESGLEHCVKIIRQLECSGHIDKNFRQKFLTWYSLRATSQEIRVVKIFIDT 639
Query: 216 FQDDSVALAEQLVDTFSDCISRKR 145
F DD +ALAEQL+DTF D +S KR
Sbjct: 640 FIDDPMALAEQLIDTFDDRVSIKR 663
>TAIR9_protein||AT4G30200.3 | Symbols: VEL1 | Encodes a protein with similarity
to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain.
VEL1 is a part of a polycomb repressive complex (PRC2) that is involved
in epigenetic silencing of the FLC flowering locus. |
chr4:14786852-14790070 REVERSE
Length = 703
Score = 146 bits (367), Expect = 2e-035
Identities = 78/118 (66%), Positives = 89/118 (75%), Gaps = 3/118 (2%)
Frame = -2
Query: 864 GLKEDKPSHHVDGCFHCVSCGKTNSLLECWKKQLLIAKETRSVDVLCYRLVLAQKLLKGT 685
GL +DK S CF+CVSCGK NSLLECWKKQL IAKETR V+VLCYRL L QKLLK +
Sbjct: 212 GLGKDKQSEGC--CFYCVSCGKANSLLECWKKQLTIAKETRRVEVLCYRLFLVQKLLKSS 269
Query: 684 EKYRKLSETVEEAVKSLETELCGPLTDLPSAMCRGNVNRLGSATKVKDLCSSALKSLQ 511
KYR L E V+EAVK+LE ++ GPLT LP M RG VNRL S V+ LCSSAL+SL+
Sbjct: 270 TKYRNLCEVVDEAVKTLEADV-GPLTGLPMKMGRGIVNRLHSGPDVQKLCSSALESLE 326
Score = 113 bits (282), Expect = 2e-025
Identities = 55/84 (65%), Positives = 68/84 (80%), Gaps = 2/84 (2%)
Frame = -2
Query: 390 NGKSSTSCG--FGLEDCVKIMRQLECSGHVEKSFRQEFLTWYSLKASAQEINVVKTFVDA 217
NG S + G GLE CVKI+RQLECSGH++K+FRQ+FLTWYSL+A++QEI VVK F+D
Sbjct: 597 NGDHSANGGTESGLEHCVKIIRQLECSGHIDKNFRQKFLTWYSLRATSQEIRVVKIFIDT 656
Query: 216 FQDDSVALAEQLVDTFSDCISRKR 145
F DD +ALAEQL+DTF D +S KR
Sbjct: 657 FIDDPMALAEQLIDTFDDRVSIKR 680
>TAIR9_protein||AT4G30200.2 | Symbols: VEL1 | Encodes a protein with similarity
to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain.
VEL1 is a part of a polycomb repressive complex (PRC2) that is involved
in epigenetic silencing of the FLC flowering locus. |
chr4:14786852-14790070 REVERSE
Length = 715
Score = 146 bits (367), Expect = 2e-035
Identities = 78/118 (66%), Positives = 89/118 (75%), Gaps = 3/118 (2%)
Frame = -2
Query: 864 GLKEDKPSHHVDGCFHCVSCGKTNSLLECWKKQLLIAKETRSVDVLCYRLVLAQKLLKGT 685
GL +DK S CF+CVSCGK NSLLECWKKQL IAKETR V+VLCYRL L QKLLK +
Sbjct: 212 GLGKDKQSEGC--CFYCVSCGKANSLLECWKKQLTIAKETRRVEVLCYRLFLVQKLLKSS 269
Query: 684 EKYRKLSETVEEAVKSLETELCGPLTDLPSAMCRGNVNRLGSATKVKDLCSSALKSLQ 511
KYR L E V+EAVK+LE ++ GPLT LP M RG VNRL S V+ LCSSAL+SL+
Sbjct: 270 TKYRNLCEVVDEAVKTLEADV-GPLTGLPMKMGRGIVNRLHSGPDVQKLCSSALESLE 326
Score = 113 bits (282), Expect = 2e-025
Identities = 55/84 (65%), Positives = 68/84 (80%), Gaps = 2/84 (2%)
Frame = -2
Query: 390 NGKSSTSCG--FGLEDCVKIMRQLECSGHVEKSFRQEFLTWYSLKASAQEINVVKTFVDA 217
NG S + G GLE CVKI+RQLECSGH++K+FRQ+FLTWYSL+A++QEI VVK F+D
Sbjct: 609 NGDHSANGGTESGLEHCVKIIRQLECSGHIDKNFRQKFLTWYSLRATSQEIRVVKIFIDT 668
Query: 216 FQDDSVALAEQLVDTFSDCISRKR 145
F DD +ALAEQL+DTF D +S KR
Sbjct: 669 FIDDPMALAEQLIDTFDDRVSIKR 692
>TAIR9_protein||AT5G57380.1 | Symbols: VIN3 | VIN3 (VERNALIZATION INSENSITIVE
3); protein binding / zinc ion binding | chr5:23246538-23249289
REVERSE
Length = 621
Score = 125 bits (312), Expect = 5e-029
Identities = 63/110 (57%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Frame = -2
Query: 843 SHHVDGCFHCVSCGKTNSLLECWKKQLLIAKETRSVDVLCYRLVLAQKLLKGTEKYRKLS 664
S +DG F+C CGK N LL CW+KQ+ +AKETR VDVLCYRL L QKLL+GT KYR L
Sbjct: 191 SDDLDGRFYCAYCGKDNDLLGCWRKQVKVAKETRRVDVLCYRLSLGQKLLRGTTKYRNLL 250
Query: 663 ETVEEAVKSLETELCGPLTDLPSAMCRGNVNRLGSATKVKDLCSSALKSL 514
E ++EAVK LE ++ GPL+ M RG VNRL S V+ LCS A+++L
Sbjct: 251 ELMDEAVKKLEGDV-GPLSGWAMKMARGIVNRLSSGVHVQKLCSQAMEAL 299
Score = 85 bits (208), Expect = 6e-017
Identities = 42/90 (46%), Positives = 61/90 (67%)
Frame = -2
Query: 414 TVSEKAAVNGKSSTSCGFGLEDCVKIMRQLECSGHVEKSFRQEFLTWYSLKASAQEINVV 235
+++EK +N ++ L VK +R LE GH++KSFR+ FLTWYSL+A+ +E+ VV
Sbjct: 514 SLNEKPEINNAANGVGDKDLGHIVKTIRCLEEEGHIDKSFRERFLTWYSLRATHREVRVV 573
Query: 234 KTFVDAFQDDSVALAEQLVDTFSDCISRKR 145
K FV+ F +D +L +QLVDTFS+ I KR
Sbjct: 574 KIFVETFMEDLSSLGQQLVDTFSESILSKR 603
>TAIR9_protein||AT2G18870.1 | Symbols: VEL3 | VEL3 (VERNALIZATION5/VIN3-LIKE) |
chr2:8167471-8168668 FORWARD
Length = 240
Score = 114 bits (285), Expect = 7e-026
Identities = 54/79 (68%), Positives = 67/79 (84%)
Frame = -2
Query: 384 KSSTSCGFGLEDCVKIMRQLECSGHVEKSFRQEFLTWYSLKASAQEINVVKTFVDAFQDD 205
K+ S G GLE CVKI+R+LECSG+VE +FRQ+FLTW+SL+A++QE N V TF++AF DD
Sbjct: 135 KNPESYGLGLEQCVKIIRKLECSGYVESTFRQKFLTWFSLRATSQERNTVTTFMNAFNDD 194
Query: 204 SVALAEQLVDTFSDCISRK 148
S+ALAEQLVDTFSDCI K
Sbjct: 195 SMALAEQLVDTFSDCIWSK 213
>TAIR9_protein||AT3G24440.1 | Symbols: VRN5, VIL1 | VRN5 (VERNALIZATION 5) |
chr3:8876207-8878171 REVERSE
Length = 603
Score = 101 bits (250), Expect = 8e-022
Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Frame = -2
Query: 834 VDGCFHCVSCGKTNSLLECWKKQLLIAKETRSVDVLCYRLVLAQKLLKGTEKYRKLSETV 655
+DGCF C SCGK + +L CWKKQL+ AKE R D LCYR+ L +LL GT ++ +L E V
Sbjct: 125 LDGCFCCYSCGKVSQILGCWKKQLVAAKEARRRDGLCYRIDLGYRLLNGTSRFSELHEIV 184
Query: 654 EEAVKSLETELCGPLTDLPSAMCRGNVNRLGSATKVKDLCSSALK 520
A LE E+ GPL + RG V+RL A V++LC+SA+K
Sbjct: 185 RAAKSMLEDEV-GPLDGPTARTDRGIVSRLPVAANVQELCTSAIK 228
Score = 84 bits (206), Expect = 1e-016
Identities = 43/99 (43%), Positives = 64/99 (64%)
Frame = -2
Query: 441 LSTKEEEEETVSEKAAVNGKSSTSCGFGLEDCVKIMRQLECSGHVEKSFRQEFLTWYSLK 262
L T++ + + S + + S+S LE CVK++R LE GH++ +FR FLTW+S+
Sbjct: 495 LMTRKRKAISDSNDSENHECDSSSIDDTLEKCVKVIRWLEREGHIKTTFRVRFLTWFSMS 554
Query: 261 ASAQEINVVKTFVDAFQDDSVALAEQLVDTFSDCISRKR 145
++AQE +VV TFV +DD +LA QLVD F+D +S KR
Sbjct: 555 STAQEQSVVSTFVQTLEDDPGSLAGQLVDAFTDVVSTKR 593
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,295,014,916
Number of Sequences: 33410
Number of Extensions: 21295014916
Number of Successful Extensions: 670053385
Number of sequences better than 0.0: 0
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