BLASTX 7.6.2
Query= UN44004 /QuerySize=933
(932 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G65260.1 | Symbols: | polyadenylate-binding p... 277 1e-074
TAIR9_protein||AT5G10350.2 | Symbols: | polyadenylate-binding p... 243 1e-064
TAIR9_protein||AT5G10350.1 | Symbols: | polyadenylate-binding p... 243 1e-064
TAIR9_protein||AT5G51120.1 | Symbols: PABN1, ATPABN1 | PABN1 (PO... 198 4e-051
TAIR9_protein||AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine... 52 5e-007
>TAIR9_protein||AT5G65260.1 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:26080501-26082984 REVERSE
Length = 221
Score = 277 bits (706), Expect = 1e-074
Identities = 139/163 (85%), Positives = 147/163 (90%), Gaps = 7/163 (4%)
Frame = -3
Query: 900 MEEEEHEVYGEEIPDVGEMDGDM-------DMTAADDDAAKELDEMKKRLKEIEDEAATL 742
MEEEEHEVYG EIPDVGEMDGDM DM AADDDA KELDEMKKRLKE+EDEAA L
Sbjct: 1 MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60
Query: 741 REMQAKVEKDMGPQDAGTVAADQAGKEEVDARSVFVGNVDYACTPEEVQQPFQSCGTVHR 562
REMQAKVEK+MG QD ++AA+QAGKEEVDARSVFVGNVDYACTPEEVQQ FQ+CGTVHR
Sbjct: 61 REMQAKVEKEMGAQDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHR 120
Query: 561 VTILTDKFGQPKGFAYVEFVEAEAIQEALQLNESELHGRQIKV 433
VTILTDKFGQPKGFAYVEFVE EA+QEALQLNESELHGRQ+KV
Sbjct: 121 VTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 163
Score = 114 bits (283), Expect = 1e-025
Identities = 52/59 (88%), Positives = 53/59 (89%), Gaps = 2/59 (3%)
Frame = -1
Query: 356 VMPKRTNVPGLKQFRGRRFNPYMG--FRRPFMSAYMYSPYGYGKVPRFRRPMRYMPYQ* 186
V+ KRTNVPGLKQFRGRRFNPYMG FRRPFMS YMYSPYGYGK PRFRRPMRYMPYQ*
Sbjct: 163 VLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPYQ* 221
>TAIR9_protein||AT5G10350.2 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:3255808-3257746 REVERSE
Length = 203
Score = 243 bits (619), Expect = 1e-064
Identities = 124/160 (77%), Positives = 141/160 (88%), Gaps = 4/160 (2%)
Frame = -3
Query: 900 MEEEEHEVYGEEIPDVGEM---DGDMDMTAADDDAAKELDEMKKRLKEIEDEAATLREMQ 730
MEEEEHEVYG EIP+VG+ D D+DM+AAD+DA EL EMK+RLKE+E+EAA LREMQ
Sbjct: 1 MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60
Query: 729 AKVEKDMG-PQDAGTVAADQAGKEEVDARSVFVGNVDYACTPEEVQQPFQSCGTVHRVTI 553
AKVEK+MG QD ++AA+Q GKEEVDARSV+VGNVDYACTPEEVQ FQ+CGTV+RVTI
Sbjct: 61 AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120
Query: 552 LTDKFGQPKGFAYVEFVEAEAIQEALQLNESELHGRQIKV 433
L DKFGQPKGFAYVEFVE EA+QEALQLNESELHGRQ+KV
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160
Score = 65 bits (158), Expect = 4e-011
Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 2/43 (4%)
Frame = -1
Query: 356 VMPKRTNVPGLKQFRGRRFNPYMG--FRRPFMSAYMYSPYGYG 234
V PKRTNVPG+KQ+ RFNP MG FRRPF+ Y YSPYGYG
Sbjct: 160 VSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYG 202
>TAIR9_protein||AT5G10350.1 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:3255674-3257746 REVERSE
Length = 218
Score = 243 bits (619), Expect = 1e-064
Identities = 124/160 (77%), Positives = 141/160 (88%), Gaps = 4/160 (2%)
Frame = -3
Query: 900 MEEEEHEVYGEEIPDVGEM---DGDMDMTAADDDAAKELDEMKKRLKEIEDEAATLREMQ 730
MEEEEHEVYG EIP+VG+ D D+DM+AAD+DA EL EMK+RLKE+E+EAA LREMQ
Sbjct: 1 MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60
Query: 729 AKVEKDMG-PQDAGTVAADQAGKEEVDARSVFVGNVDYACTPEEVQQPFQSCGTVHRVTI 553
AKVEK+MG QD ++AA+Q GKEEVDARSV+VGNVDYACTPEEVQ FQ+CGTV+RVTI
Sbjct: 61 AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120
Query: 552 LTDKFGQPKGFAYVEFVEAEAIQEALQLNESELHGRQIKV 433
L DKFGQPKGFAYVEFVE EA+QEALQLNESELHGRQ+KV
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKV 160
Score = 97 bits (240), Expect = 1e-020
Identities = 44/59 (74%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Frame = -1
Query: 356 VMPKRTNVPGLKQFRGRRFNPYMG--FRRPFMSAYMYSPYGYGKVPRFRRPMRYMPYQ* 186
V PKRTNVPG+KQ+ RFNP MG FRRPF+ Y YSPYGYGK PRFRRPMRYMPYQ*
Sbjct: 160 VSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPYQ* 218
>TAIR9_protein||AT5G51120.1 | Symbols: PABN1, ATPABN1 | PABN1
(POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding /
protein binding | chr5:20779760-20781241 FORWARD
Length = 228
Score = 198 bits (503), Expect = 4e-051
Identities = 103/162 (63%), Positives = 123/162 (75%), Gaps = 5/162 (3%)
Frame = -3
Query: 918 EREREAMEEEEHEVYGEEIPDVGEMDGDMDMTAADDDAAKELDEMKKRLKEIEDEAATLR 739
E E M+ EE+E +G E G GD ++ ++++L++MKKR+KEIE+EA LR
Sbjct: 18 EEEEGEMDTEEYEEHGGE---EGAAAGDEELEPG--SSSRDLEDMKKRIKEIEEEAGALR 72
Query: 738 EMQAKVEKDMGPQDAGTVAADQAGKEEVDARSVFVGNVDYACTPEEVQQPFQSCGTVHRV 559
EMQAK EKDMG + A KEEVD+RS++VGNVDYACTPEEVQQ FQSCGTV+RV
Sbjct: 73 EMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRV 132
Query: 558 TILTDKFGQPKGFAYVEFVEAEAIQEALQLNESELHGRQIKV 433
TILTDKFGQPKGFAYVEFVE EA+Q +L LNESELHGRQIKV
Sbjct: 133 TILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKV 174
Score = 68 bits (164), Expect = 8e-012
Identities = 34/57 (59%), Positives = 37/57 (64%), Gaps = 5/57 (8%)
Frame = -1
Query: 356 VMPKRTNVPGLKQF--RGRRFNPYMGFRRPFMSAYMYSPYGYGKVPRFRRPMRYMPY 192
V KRTNVPG++QF RGR F P GF Y PY YG+VPRFRRPMRY PY
Sbjct: 174 VSAKRTNVPGMRQFRGRGRPFRPMRGF---MPGVPFYPPYAYGRVPRFRRPMRYRPY 227
>TAIR9_protein||AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich
RNA-binding protein 5); ATP binding / RNA binding |
chr1:27915346-27916857 FORWARD
Length = 290
Score = 52 bits (123), Expect = 5e-007
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = -3
Query: 657 VDARSVFVGNVDYACTPEEVQQPFQSCGTVHRVTILTDK-FGQPKGFAYVEFVEAEAIQE 481
+ + +FVG + Y+ +++ F G V I+ D+ G+ +GFA+V F E
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 480 ALQLNESELHGRQIKVH 430
A+QL+ +LHGR+I+V+
Sbjct: 91 AMQLDGQDLHGRRIRVN 107
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,384,072,444
Number of Sequences: 33410
Number of Extensions: 21384072444
Number of Successful Extensions: 670071605
Number of sequences better than 0.0: 0
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