BLASTX 7.6.2
Query= UN45172 /QuerySize=1050
(1049 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G52150.1 | Symbols: | RNA recognition motif (... 363 1e-100
TAIR9_protein||AT3G52150.2 | Symbols: | RNA recognition motif (... 363 1e-100
TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA b... 146 2e-035
TAIR9_protein||AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRB... 84 1e-016
TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotei... 79 3e-015
TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotei... 75 6e-014
TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding /... 72 5e-013
TAIR9_protein||AT3G53460.2 | Symbols: CP29 | CP29; RNA binding /... 72 5e-013
TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotei... 65 5e-011
TAIR9_protein||AT4G13860.1 | Symbols: | glycine-rich RNA-bindin... 64 1e-010
>TAIR9_protein||AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19342074-19343090 FORWARD
Length = 254
Score = 363 bits (930), Expect = 1e-100
Identities = 194/247 (78%), Positives = 215/247 (87%), Gaps = 8/247 (3%)
Frame = +1
Query: 157 TSLQSQTNAFA-LKANAFALKAKAFPSVPRPISLPRTSRTRFIPRATMETEEKP-ALDPN 330
T Q+ +F L +K FPS+ S R+SRTRFIP A ETEEKP ALDP+
Sbjct: 14 TIFSFQSESFTPLHTRVNVFSSKPFPSLAGTFS--RSSRTRFIPYAVTETEEKPAALDPS 71
Query: 331 AESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDAN 510
+E++RRVYIGNIPRTVTNEQLTKLVEEHGAVE+VQVMYDKYSGRSRRFGFATMKSVEDAN
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 511 AVIEKLNGTTIEGREVKVNITEKPLELSSSSSPDLSLLQSEDAAFVDSPYKVYVGNLAKS 690
AV+EKLNG T+EGRE+KVNITEKP+ +SSPDLS+LQSED+AFVDSPYKVYVGNLAK+
Sbjct: 132 AVVEKLNGNTVEGREIKVNITEKPI----ASSPDLSVLQSEDSAFVDSPYKVYVGNLAKT 187
Query: 691 VTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVALNNSLLEGQK 870
VTKEMLE+LFSEKGKV+SAKVSRVPGTSKSTGFGFVTFSS+EDVEAAIVALNNSLLEGQK
Sbjct: 188 VTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQK 247
Query: 871 IRVNKA* 891
IRVNKA*
Sbjct: 248 IRVNKA* 254
>TAIR9_protein||AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19342074-19343090 FORWARD
Length = 254
Score = 363 bits (930), Expect = 1e-100
Identities = 194/247 (78%), Positives = 215/247 (87%), Gaps = 8/247 (3%)
Frame = +1
Query: 157 TSLQSQTNAFA-LKANAFALKAKAFPSVPRPISLPRTSRTRFIPRATMETEEKP-ALDPN 330
T Q+ +F L +K FPS+ S R+SRTRFIP A ETEEKP ALDP+
Sbjct: 14 TIFSFQSESFTPLHTRVNVFSSKPFPSLAGTFS--RSSRTRFIPYAVTETEEKPAALDPS 71
Query: 331 AESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDAN 510
+E++RRVYIGNIPRTVTNEQLTKLVEEHGAVE+VQVMYDKYSGRSRRFGFATMKSVEDAN
Sbjct: 72 SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 511 AVIEKLNGTTIEGREVKVNITEKPLELSSSSSPDLSLLQSEDAAFVDSPYKVYVGNLAKS 690
AV+EKLNG T+EGRE+KVNITEKP+ +SSPDLS+LQSED+AFVDSPYKVYVGNLAK+
Sbjct: 132 AVVEKLNGNTVEGREIKVNITEKPI----ASSPDLSVLQSEDSAFVDSPYKVYVGNLAKT 187
Query: 691 VTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVALNNSLLEGQK 870
VTKEMLE+LFSEKGKV+SAKVSRVPGTSKSTGFGFVTFSS+EDVEAAIVALNNSLLEGQK
Sbjct: 188 VTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQK 247
Query: 871 IRVNKA* 891
IRVNKA*
Sbjct: 248 IRVNKA* 254
>TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding |
chr3:19421619-19422855 FORWARD
Length = 330
Score = 146 bits (368), Expect = 2e-035
Identities = 79/208 (37%), Positives = 124/208 (59%), Gaps = 9/208 (4%)
Frame = +1
Query: 298 ETEEKPALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFG 477
E EE+ + R+Y+GN+P T+T+ +L+++ E G V VQ++YDK + RSR FG
Sbjct: 101 EVEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFG 160
Query: 478 FATMKSVEDANAVIEKLNGTTIEGREVKVNITEKPLELSSSSSPDLSLLQSEDAAFVDSP 657
F TM S+E+A ++ N + I GR VKVN E P + + ++ + ++VDSP
Sbjct: 161 FVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVP--RGGENEVMRTKIRDNNRSYVDSP 218
Query: 658 YKVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIV 837
+KVY GNL ++T + L+ F ++ VL AKV T +S GFGF++F S E+V++A+
Sbjct: 219 HKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALA 278
Query: 838 ALNNSLLEGQKIRVNKA*CVCVCDSERE 921
+N +EG+ +R+N A SERE
Sbjct: 279 TMNGVEVEGRALRLNLA-------SERE 299
>TAIR9_protein||AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding |
chr4:12766223-12767952 REVERSE
Length = 330
Score = 84 bits (207), Expect = 1e-016
Identities = 38/82 (46%), Positives = 56/82 (68%)
Frame = +1
Query: 334 ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANA 513
E + RVY+GN+P V N +L +L EHG V + +V+YD+ +GRSR FGF TM V++ N
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 514 VIEKLNGTTIEGREVKVNITEK 579
I L+G +EGR ++VN+ E+
Sbjct: 301 AISALDGQNLEGRAIRVNVAEE 322
Score = 70 bits (170), Expect = 2e-012
Identities = 39/77 (50%), Positives = 49/77 (63%)
Frame = +1
Query: 658 YKVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIV 837
++VYVGNL V LE LFSE GKV+ A+V T +S GFGFVT S +++ AI
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 838 ALNNSLLEGQKIRVNKA 888
AL+ LEG+ IRVN A
Sbjct: 304 ALDGQNLEGRAIRVNVA 320
Score = 61 bits (146), Expect = 1e-009
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Frame = +1
Query: 544 EGREVKVNITEKPLELSSSSSPDLSL-LQSEDAAFVD--SPYKVYVGNLAKSVTKEMLES 714
EG E + + +E + S D+S SE A F + K++VGNLA V + L
Sbjct: 109 EGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAM 168
Query: 715 LFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVALNNSLLEGQKIRVNKA 888
LF + G V A+V T +S GFGFVT SS ++ E A+ N L G+ + VNKA
Sbjct: 169 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA 226
>TAIR9_protein||AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr2:15634980-15636331
REVERSE
Length = 290
Score = 79 bits (194), Expect = 3e-015
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 11/156 (7%)
Frame = +1
Query: 133 FSFHSESSTSLQSQTNAFALKANAFALKAKAFPSVPRPISLPRTSRTRFIPRATMETEE- 309
F +S SL S + +F L +++ + A + P R +R I + E EE
Sbjct: 20 FGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSP----ASRFARNVAI-TSEFEVEED 74
Query: 310 -----KPALDPNAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRF 474
P + + + ++++GN+P V + QL +L E G VE V+V+YDK +GRSR F
Sbjct: 75 GFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGF 134
Query: 475 GFATMKSVEDANAVIEKLNGTTIEGREVKVNITEKP 582
GF TM SV + A ++ NG ++GR ++VN P
Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPP 170
Score = 72 bits (175), Expect = 5e-013
Identities = 37/76 (48%), Positives = 56/76 (73%)
Frame = +1
Query: 661 KVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVA 840
+VYVGNL+ V LESLFSE+GKV+ A+V + +S GFGFVT+ S ++V+ AI +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 841 LNNSLLEGQKIRVNKA 888
L+ + L+G++IRV++A
Sbjct: 265 LDGADLDGRQIRVSEA 280
Score = 66 bits (160), Expect = 3e-011
Identities = 32/82 (39%), Positives = 50/82 (60%)
Frame = +1
Query: 331 AESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDAN 510
A S RVY+GN+ V + L L E G V + +V+YD+ SGRS+ FGF T S ++
Sbjct: 200 AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 511 AVIEKLNGTTIEGREVKVNITE 576
I+ L+G ++GR+++V+ E
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAE 281
>TAIR9_protein||AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative / RNA-binding protein
1/2/3, putative / RNA-binding protein cp31, putative |
chr5:20452677-20453965 REVERSE
Length = 290
Score = 75 bits (183), Expect = 6e-014
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 6/108 (5%)
Frame = +1
Query: 259 RTSRTRFIPRATMETEEKPALDPNA-ESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQ 435
R + R PR + +P P +++ R+Y+GN+P V + +L +L EHG V +
Sbjct: 183 RLTVNRAAPRGS-----RPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDAR 237
Query: 436 VMYDKYSGRSRRFGFATMKSVEDANAVIEKLNGTTIEGREVKVNITEK 579
V+ D+ +GRSR FGF M + + N I L+G +EGR +KVN+ E+
Sbjct: 238 VVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEE 285
Score = 72 bits (176), Expect = 4e-013
Identities = 38/80 (47%), Positives = 51/80 (63%)
Frame = +1
Query: 649 DSPYKVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEA 828
D+ +++YVGNL V LE LFSE GKV+ A+V T +S GFGFV S++ +V
Sbjct: 204 DAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNV 263
Query: 829 AIVALNNSLLEGQKIRVNKA 888
AI AL+ LEG+ I+VN A
Sbjct: 264 AIAALDGQNLEGRAIKVNVA 283
>TAIR9_protein||AT3G53460.1 | Symbols: CP29 | CP29; RNA binding / poly(U)
binding | chr3:19819738-19821423 REVERSE
Length = 343
Score = 72 bits (175), Expect = 5e-013
Identities = 35/87 (40%), Positives = 52/87 (59%)
Frame = +1
Query: 346 RVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAVIEK 525
++++GN+ V + QL +L E G VE V+V+YDK +GRSR FGF TM + + A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 526 LNGTTIEGREVKVNITEKPLELSSSSS 606
NG EGR ++VN P + S S
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFS 186
Score = 71 bits (172), Expect = 1e-012
Identities = 36/76 (47%), Positives = 56/76 (73%)
Frame = +1
Query: 661 KVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVA 840
++YVGNL+ V LE+LF+E+GKV+ A+V + +S GFGFVT SS ++V+ AI +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 841 LNNSLLEGQKIRVNKA 888
LN + L+G++IRV++A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 68 bits (164), Expect = 1e-011
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +1
Query: 337 SSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAV 516
S R+Y+GN+ V + L L E G V + +V+YD+ SGRS+ FGF T+ S ++
Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
Query: 517 IEKLNGTTIEGREVKVNITE 576
I LNG ++GR+++V+ E
Sbjct: 315 INSLNGADLDGRQIRVSEAE 334
>TAIR9_protein||AT3G53460.2 | Symbols: CP29 | CP29; RNA binding / poly(U)
binding | chr3:19819738-19821423 REVERSE
Length = 343
Score = 72 bits (175), Expect = 5e-013
Identities = 35/87 (40%), Positives = 52/87 (59%)
Frame = +1
Query: 346 RVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAVIEK 525
++++GN+ V + QL +L E G VE V+V+YDK +GRSR FGF TM + + A ++
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 526 LNGTTIEGREVKVNITEKPLELSSSSS 606
NG EGR ++VN P + S S
Sbjct: 160 FNGYEFEGRPLRVNAGPPPPKREESFS 186
Score = 71 bits (172), Expect = 1e-012
Identities = 36/76 (47%), Positives = 56/76 (73%)
Frame = +1
Query: 661 KVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVA 840
++YVGNL+ V LE+LF+E+GKV+ A+V + +S GFGFVT SS ++V+ AI +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 841 LNNSLLEGQKIRVNKA 888
LN + L+G++IRV++A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 68 bits (164), Expect = 1e-011
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +1
Query: 337 SSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQVMYDKYSGRSRRFGFATMKSVEDANAV 516
S R+Y+GN+ V + L L E G V + +V+YD+ SGRS+ FGF T+ S ++
Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 314
Query: 517 IEKLNGTTIEGREVKVNITE 576
I LNG ++GR+++V+ E
Sbjct: 315 INSLNGADLDGRQIRVSEAE 334
>TAIR9_protein||AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative | chr1:22093678-22094540
REVERSE
Length = 259
Score = 65 bits (158), Expect = 5e-011
Identities = 34/87 (39%), Positives = 56/87 (64%)
Frame = +1
Query: 628 SEDAAFVDSPYKVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFS 807
+++ + ++ +K++VGNL+ +VT E L F E G V+ A+V T +S G+GFV +S
Sbjct: 167 NKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYS 226
Query: 808 SDEDVEAAIVALNNSLLEGQKIRVNKA 888
S ++E A+ +L+ LEG+ IRVN A
Sbjct: 227 SKAEMETALESLDGFELEGRAIRVNLA 253
Score = 62 bits (149), Expect = 5e-010
Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Frame = +1
Query: 271 TRFIPRA---TMETEEKPALDP-NAESSRRVYIGNIPRTVTNEQLTKLVEEHGAVEQVQV 438
T ++ RA + KP +P E+ ++++GN+ TVT+E L E G V +V
Sbjct: 149 TEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARV 208
Query: 439 MYDKYSGRSRRFGFATMKSVEDANAVIEKLNGTTIEGREVKVNITE 576
++D +GRSR +GF S + +E L+G +EGR ++VN+ +
Sbjct: 209 VFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254
>TAIR9_protein||AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr4:8022601-8023162 FORWARD
Length = 88
Score = 64 bits (154), Expect = 1e-010
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +1
Query: 661 KVYVGNLAKSVTKEMLESLFSEKGKVLSAKVSRVPGTSKSTGFGFVTFSSDEDVEAAIVA 840
+VYVGNL+ + T +ML FS G V+ A V R T +S GFGFVT+SS + EAA+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 841 LNNSLLEGQKIRV 879
++ L G+++ V
Sbjct: 64 MDGKELNGRRVSV 76
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,902,902,091
Number of Sequences: 33410
Number of Extensions: 21902902091
Number of Successful Extensions: 696741019
Number of sequences better than 0.0: 0
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