BLASTX 7.6.2
Query= UN45866 /QuerySize=535
(534 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G02540.1 | Symbols: RAD23-3 | RAD23-3 (PUTATIV... 61 3e-010
TAIR9_protein||AT3G02540.2 | Symbols: RAD23-3 | RAD23-3 (PUTATIV... 61 3e-010
TAIR9_protein||AT5G38470.1 | Symbols: | DNA repair protein RAD2... 59 2e-009
TAIR9_protein||AT5G38470.2 | Symbols: | DNA repair protein RAD2... 59 2e-009
TAIR9_protein||AT5G16090.1 | Symbols: | INVOLVED IN: protein mo... 57 5e-009
TAIR9_protein||AT4G01150.1 | Symbols: | unknown protein | chr4:... 57 8e-009
TAIR9_protein||AT4G01150.2 | Symbols: | unknown protein | chr4:... 57 8e-009
>TAIR9_protein||AT3G02540.1 | Symbols: RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR
PROTEIN RAD23-3); damaged DNA binding | chr3:533095-536151 REVERSE
Length = 420
Score = 61 bits (147), Expect = 3e-010
Identities = 32/53 (60%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Frame = -2
Query: 332 EQVVDVKKKIETVLGV---TAAEQLLIHKGKVLKDETTVEANNVSEKSIIGVM 183
+ VVDVKK IE+V G AA+Q+LIH+GKVLKDETT+E N V+E S I +M
Sbjct: 21 DSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIM 73
>TAIR9_protein||AT3G02540.2 | Symbols: RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR
PROTEIN RAD23-3) | chr3:533906-536151 REVERSE
Length = 300
Score = 61 bits (147), Expect = 3e-010
Identities = 32/53 (60%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Frame = -2
Query: 332 EQVVDVKKKIETVLGV---TAAEQLLIHKGKVLKDETTVEANNVSEKSIIGVM 183
+ VVDVKK IE+V G AA+Q+LIH+GKVLKDETT+E N V+E S I +M
Sbjct: 21 DSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIM 73
>TAIR9_protein||AT5G38470.1 | Symbols: | DNA repair protein RAD23, putative |
chr5:15404720-15407500 FORWARD
Length = 379
Score = 59 bits (141), Expect = 2e-009
Identities = 32/52 (61%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Frame = -2
Query: 332 EQVVDVKKKIETVLGV--TAAEQLLIHKGKVLKDETTVEANNVSEKSIIGVM 183
++V DVK IETV G AA+Q+LIH+GKVLKDETT+E NNV E S I +M
Sbjct: 21 DKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIM 72
>TAIR9_protein||AT5G38470.2 | Symbols: | DNA repair protein RAD23, putative |
chr5:15404720-15407251 FORWARD
Length = 333
Score = 59 bits (141), Expect = 2e-009
Identities = 32/52 (61%), Positives = 39/52 (75%), Gaps = 2/52 (3%)
Frame = -2
Query: 332 EQVVDVKKKIETVLGV--TAAEQLLIHKGKVLKDETTVEANNVSEKSIIGVM 183
++V DVK IETV G AA+Q+LIH+GKVLKDETT+E NNV E S I +M
Sbjct: 21 DKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIM 72
>TAIR9_protein||AT5G16090.1 | Symbols: | INVOLVED IN: protein modification
process; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation
elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940),
Ubiquitin-associated/translation elongation factor EF1B, N-terminal
(InterPro:IPR000449), Ubiquitin (InterPro:IPR000626), UV excision
repair protein Rad23, C-terminal (InterPro:IPR014761), UBA-like
(InterPro:IPR009060); BEST Arabidopsis thaliana protein match is:
RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) (TAIR:AT3G02540.2); Has
550 Blast hits to 550 proteins in 137 species: Archae - 0; Bacteria -
0; Metazoa - 338; Fungi - 37; Plants - 110; Viruses - 26; Other
Eukaryotes - 39 (source: NCBI BLink). | chr5:5255797-5257230 REVERSE
Length = 172
Score = 57 bits (137), Expect = 5e-009
Identities = 28/53 (52%), Positives = 41/53 (77%), Gaps = 3/53 (5%)
Frame = -2
Query: 332 EQVVDVKKKIETVLGVT---AAEQLLIHKGKVLKDETTVEANNVSEKSIIGVM 183
+ V +VKK IETV+G + AA+Q+LIHK + L+DETT+EAN V +KS+I ++
Sbjct: 21 DSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTMEANKVFDKSVIAII 73
>TAIR9_protein||AT4G01150.1 | Symbols: | unknown protein | chr4:493692-494668
FORWARD
Length = 165
Score = 57 bits (135), Expect = 8e-009
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = -3
Query: 478 MAMTVAASSSVAVMIPRVPAVSARLSAVPYLPP 380
MA++VAASSS+AVM+PRVPAVS R SAVPYLPP
Sbjct: 1 MAISVAASSSMAVMVPRVPAVSTRCSAVPYLPP 33
>TAIR9_protein||AT4G01150.2 | Symbols: | unknown protein | chr4:493692-494379
FORWARD
Length = 126
Score = 57 bits (135), Expect = 8e-009
Identities = 27/33 (81%), Positives = 31/33 (93%)
Frame = -3
Query: 478 MAMTVAASSSVAVMIPRVPAVSARLSAVPYLPP 380
MA++VAASSS+AVM+PRVPAVS R SAVPYLPP
Sbjct: 1 MAISVAASSSMAVMVPRVPAVSTRCSAVPYLPP 33
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,125,547,072
Number of Sequences: 33410
Number of Extensions: 22125547072
Number of Successful Extensions: 696913121
Number of sequences better than 0.0: 0
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