BLASTX 7.6.2
Query= UN45984 /QuerySize=496
(495 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G59810.1 | Symbols: | small nuclear ribonucle... 164 2e-041
TAIR9_protein||AT2G43810.1 | Symbols: | small nuclear ribonucle... 156 8e-039
TAIR9_protein||AT2G43810.2 | Symbols: | small nuclear ribonucle... 156 8e-039
TAIR9_protein||AT4G30220.1 | Symbols: RUXF | RUXF (SMALL NUCLEAR... 74 3e-014
TAIR9_protein||AT2G14285.1 | Symbols: | FUNCTIONS IN: molecular... 56 9e-009
>TAIR9_protein||AT3G59810.1 | Symbols: | small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative / Sm protein
F, putative | chr3:22096841-22097666 FORWARD
Length = 92
Score = 164 bits (415), Expect = 2e-041
Identities = 80/88 (90%), Positives = 82/88 (93%)
Frame = +2
Query: 80 DNKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLK 259
+ KVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVNGQLK
Sbjct: 5 EEKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVNGQLK 64
Query: 260 NKYGDAFIRGNNVLYISTVNTPLADGA* 343
NKYGDAFIRGNNVLYISTVN +ADGA*
Sbjct: 65 NKYGDAFIRGNNVLYISTVNMTVADGA* 92
>TAIR9_protein||AT2G43810.1 | Symbols: | small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative / Sm protein
F, putative | chr2:18149725-18150879 FORWARD
Length = 92
Score = 156 bits (393), Expect = 8e-039
Identities = 75/86 (87%), Positives = 78/86 (90%)
Frame = +2
Query: 86 KVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 265
K SGTTKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 7 KASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNT 66
Query: 266 YGDAFIRGNNVLYISTVNTPLADGA* 343
YGDAF+RGNNVLYIST L+DGA*
Sbjct: 67 YGDAFVRGNNVLYISTTKGTLSDGA* 92
>TAIR9_protein||AT2G43810.2 | Symbols: | small nuclear ribonucleoprotein F,
putative / U6 snRNA-associated Sm-like protein, putative / Sm protein
F, putative | chr2:18149725-18150879 FORWARD
Length = 92
Score = 156 bits (393), Expect = 8e-039
Identities = 75/86 (87%), Positives = 78/86 (90%)
Frame = +2
Query: 86 KVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNK 265
K SGTTKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVNGQLKN
Sbjct: 7 KASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVNGQLKNT 66
Query: 266 YGDAFIRGNNVLYISTVNTPLADGA* 343
YGDAF+RGNNVLYIST L+DGA*
Sbjct: 67 YGDAFVRGNNVLYISTTKGTLSDGA* 92
>TAIR9_protein||AT4G30220.1 | Symbols: RUXF | RUXF (SMALL NUCLEAR
RIBONUCLEOPROTEIN F) | chr4:14803100-14804259 REVERSE
Length = 89
Score = 74 bits (181), Expect = 3e-014
Identities = 33/69 (47%), Positives = 47/69 (68%)
Frame = +2
Query: 110 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 289
P FL ++ G+ V+VKL G++Y+G LA +D YMN+ + TEEY++GQL G+ IR
Sbjct: 8 PKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRC 67
Query: 290 NNVLYISTV 316
NNVLY+ V
Sbjct: 68 NNVLYVRGV 76
>TAIR9_protein||AT2G14285.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: Small nuclear
ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein,
core (InterPro:IPR001163), Like-Sm ribonucleoprotein, eukaryotic and
archaea-type, core (InterPro:IPR006649), Like-Sm
ribonucleoprotein-related, core (InterPro:IPR010920); BEST Arabidopsis
thaliana protein match is: RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)
(TAIR:AT4G30220.1); Has 585 Blast hits to 585 proteins in 157 species:
Archae - 67; Bacteria - 0; Metazoa - 219; Fungi - 139; Plants - 63;
Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). |
chr2:6052612-6053500 REVERSE
Length = 62
Score = 56 bits (134), Expect = 9e-009
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +2
Query: 170 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTV 316
++Y+G LA +D YMN+ + TEEY++GQL G+ IR NNVLY+ V
Sbjct: 1 MEYKGFLASVDSYMNLQLGNTEEYIDGQLTGNLGEILIRCNNVLYVRGV 49
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,125,547,072
Number of Sequences: 33410
Number of Extensions: 22125547072
Number of Successful Extensions: 696913121
Number of sequences better than 0.0: 0
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