BLASTX 7.6.2
Query= UN46470 /QuerySize=1043
(1042 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / ... 83 2e-016
TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding | ch... 75 8e-014
TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (... 72 4e-013
TAIR9_protein||AT5G53700.1 | Symbols: | INVOLVED IN: biological... 71 9e-013
TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1... 69 6e-012
TAIR9_protein||AT1G73490.1 | Symbols: | RNA recognition motif (... 61 1e-009
TAIR9_protein||AT5G05430.1 | Symbols: | FUNCTIONS IN: molecular... 52 6e-007
>TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / nucleotide
binding | chr5:869208-870855 REVERSE
Length = 322
Score = 83 bits (204), Expect = 2e-016
Identities = 46/95 (48%), Positives = 62/95 (65%), Gaps = 4/95 (4%)
Frame = +3
Query: 33 MDESAI---KGLELNGCEAEIRESRIVVEGYDTSLRREDVEEALRKHFASCGNIIHVYVP 203
M+ESAI K LELN + + + I VEGYDTSL+ + AL KHFASCG I +YVP
Sbjct: 1 MEESAIKRLKSLELNDSDKQSTSTAICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVP 60
Query: 204 INEETDIPNRFSFIYVNGED-EEKALRLDGSDMGG 305
+ + I SF+++ GE E+KAL+L G+D+GG
Sbjct: 61 RDFKKKILKSVSFMWIKGEGAEDKALQLSGTDVGG 95
Score = 67 bits (162), Expect = 2e-011
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = +3
Query: 99 IVVEGYDTSLRREDVEEALRKHFASCGNIIHVYVPINEETDIPNRFSFIYVNGED-EEKA 275
I VEGYDTSL++ +E L KHF SCG I HVYVP + E + +F+ + GE E+KA
Sbjct: 115 ISVEGYDTSLQKYLLELILEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKA 174
Query: 276 LRLDGSDMGG 305
L+L G+D+ G
Sbjct: 175 LQLSGTDVVG 184
>TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding |
chr5:873804-875025 REVERSE
Length = 227
Score = 75 bits (182), Expect = 8e-014
Identities = 45/92 (48%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Frame = +3
Query: 48 IKGLELNGCEAEIRESR-----IVVEGYDTSLRREDVEEALRKHFASCGNIIHVYVPINE 212
+K L+LN A R+ R I VEGYDT LR V+ L KHFASCG I H+YVP +
Sbjct: 9 MKLLQLNEIGANSRKPRIPWTKISVEGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDF 68
Query: 213 ETDIPNRFSFIYVNGE-DEEKALRLDGSDMGG 305
E I +F+ + GE EEKAL L G+D GG
Sbjct: 69 ERGILKSVAFMCIKGEGGEEKALLLSGTDAGG 100
Score = 55 bits (130), Expect = 9e-008
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Frame = +3
Query: 81 EIRESRIVVEGYDTSLRREDVEEALRKHFASCGNIIHVYVPINEETDIPNRFSFIYVNGE 260
++ R+ V GYDT + + D++ AL +HF+SCG + V V +P+ IY+ GE
Sbjct: 124 KLETHRVRVTGYDTCVPKIDIQMALCEHFSSCGEVTQVVV-------LPSGSGSIYLQGE 176
Query: 261 D-EEKALRLDGSDMGG 305
E+KAL+L+G MGG
Sbjct: 177 RCEDKALQLNGCKMGG 192
>TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:2805779-2806912 REVERSE
Length = 199
Score = 72 bits (176), Expect = 4e-013
Identities = 48/105 (45%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Frame = +3
Query: 33 MDESAIKGLELNGCEAEIRES---RIVVEGYDTSLRREDVEEALRKHFASCGNIIHVYVP 203
MDE A KGLE+ +IR+S RI V GYD L RE VE L+K F+ CG I V++P
Sbjct: 1 MDEIANKGLEVKR-SRKIRDSDIERISVTGYDIELPREHVESELKKLFSPCGEITDVHIP 59
Query: 204 INEETDIPNRFSFIYVNGE-DEEKALRLDGSDMGGRILQTYAYPF 335
+ + + +FIY GE +KAL+L+GSDMGG + A PF
Sbjct: 60 ETRNSSLWSH-AFIYFVGEGTADKALQLNGSDMGGWTVDAEADPF 103
>TAIR9_protein||AT5G53700.1 | Symbols: | INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: nucleic acid binding / nucleotide binding
(TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). |
chr5:21801221-21802546 FORWARD
Length = 252
Score = 71 bits (173), Expect = 9e-013
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Frame = +3
Query: 33 MDESAIKGLELNGCEAEIRESRIVVEGYDTSLRREDVEEALRKHFASCGNIIHVYVPINE 212
M+ESA++GLE S+I VEGYDTS+ ++ AL KHFASCG I+ + VP +
Sbjct: 1 MEESAVRGLESKDTNNRKCFSKISVEGYDTSVHEFPLKLALAKHFASCGKIVDIDVPRDF 60
Query: 213 ETDIPNRFSFIYVNGEDEE----KALRLDGSDMGGRILQTYAYPFQENYLD 353
+ I FI + ++ E KAL L G+D+GG + + P Q+ Y D
Sbjct: 61 KKRILKSPLFIIFHAKEGESPVDKALELSGTDVGGWNVVVKSLPGQQMYRD 111
>TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1; nucleic acid
binding / nucleotide binding | chr1:18098186-18101422 FORWARD
Length = 558
Score = 69 bits (166), Expect = 6e-012
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Frame = +3
Query: 90 ESRIVVEGYDTSLRREDVEEALRKHFASCGNIIHVYVPINEETDIPNRFSFIYVNGEDEE 269
E +I V+G+D SL +D++ LR+HF+SCG I +V VPI+ +T +++ + E +E
Sbjct: 400 EKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS-EGKE 458
Query: 270 KALRLDGSDMGG 305
KAL L+GSDMGG
Sbjct: 459 KALELNGSDMGG 470
>TAIR9_protein||AT1G73490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:27633496-27634867 REVERSE
Length = 260
Score = 61 bits (146), Expect = 1e-009
Identities = 35/101 (34%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Frame = +3
Query: 84 IRESRIVVEGYDTSLRREDVEEALRKHFASCGNIIHVYVPINEETDIPNRFSFIYVNGED 263
+ +S + V+G+DTS R +++ AL HF+SCG + +YVPI T ++FI + ++
Sbjct: 114 VSDSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGYAFI--DMKN 171
Query: 264 EEKALRLDGSDMGGRILQT-YAYPFQENYLDDVLATLKEAR 383
E K L L+GS +GGR + +A +E Y L + R
Sbjct: 172 ETKGLTLNGSHLGGRKIDVMFAIDREEFYFSSNLKHCQRCR 212
>TAIR9_protein||AT5G05430.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: stem, leaf; EXPRESSED DURING:
LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is:
RNA recognition motif (RRM)-containing protein (TAIR:AT3G09160.1); Has
23 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr5:1605275-1606703 REVERSE
Length = 159
Score = 52 bits (123), Expect = 6e-007
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Frame = +3
Query: 96 RIVVEGYDTSLRREDVEEALRKHFASCGNIIHVYVPI--NEETDIPNRFSFIYVNGEDEE 269
RI V GYDT L +D+ AL +HF+SCG I +Y+P+ +E I NRF ++
Sbjct: 24 RIKVTGYDTGLPLDDLYTALAEHFSSCGEIWEIYIPLKFDETNTILNRFWWLLPPPFLSN 83
Query: 270 KALRLDGSDMGGRILQTYAYPFQENYLDDVLATL 371
+ ++ ++GG + AYP+ + D V A +
Sbjct: 84 SSAQV---NVGGWNVSVEAYPYPAHANDSVRAVV 114
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,307,662,547
Number of Sequences: 33410
Number of Extensions: 22307662547
Number of Successful Extensions: 702439419
Number of sequences better than 0.0: 0
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