BLASTX 7.6.2
Query= UN46509 /QuerySize=574
(573 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G16740.1 | Symbols: | ribosomal protein L20 f... 252 2e-067
TAIR9_protein||ATCG00660.1 | Symbols: RPL20 | encodes a chloropl... 65 2e-011
>TAIR9_protein||AT1G16740.1 | Symbols: | ribosomal protein L20 family protein |
chr1:5727773-5728950 FORWARD
Length = 127
Score = 252 bits (641), Expect = 2e-067
Identities = 125/127 (98%)
Frame = +3
Query: 30 MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 209
MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ
Sbjct: 1 MNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQ 60
Query: 210 HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQAPRKVD 389
HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQA RKVD
Sbjct: 61 HGVNYGNFIHGLMKENIQLNRKVLSELSMHEPYSFKALVDVSRKSFPGNKNVVQASRKVD 120
Query: 390 ISSINA* 410
ISSINA*
Sbjct: 121 ISSINA* 127
>TAIR9_protein||ATCG00660.1 | Symbols: RPL20 | encodes a chloroplast ribosomal
protein L20, a constituent of the large subunit of the ribosomal
complex | chrC:68512-68865 REVERSE
Length = 118
Score = 65 bits (158), Expect = 2e-011
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Frame = +3
Query: 24 RKMNKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGS 203
R+ K +F A FRG R ++ +AL ++RDR +KR+ R LWI RINA
Sbjct: 12 RRRTKLRLF--ASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRLWITRINAVI 69
Query: 204 RQHGV--NYGNFIHGLMKENIQLNRKVLSELSM 296
+ GV +Y FIH L K+ + LNRK+L+++++
Sbjct: 70 HEMGVFYSYNEFIHNLYKKQLLLNRKILAQIAL 102
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,307,662,547
Number of Sequences: 33410
Number of Extensions: 22307662547
Number of Successful Extensions: 702439419
Number of sequences better than 0.0: 0
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