BLASTX 7.6.2
Query= UN46640 /QuerySize=719
(718 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protei... 220 7e-057
sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protei... 215 4e-055
sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protei... 212 3e-054
sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS... 176 2e-043
sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS... 173 1e-042
sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS... 173 1e-042
sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protei... 151 5e-036
sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protei... 144 7e-034
sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protei... 134 5e-031
sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bo... 70 9e-012
sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Ho... 70 9e-012
sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Ma... 70 9e-012
sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mu... 70 9e-012
sp|P43321|SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 OS=Sa... 63 1e-009
>sp|Q9LGE6|LSM4_ORYSJ Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza
sativa subsp. japonica GN=Os01g0256900 PE=2 SV=1
Length = 147
Score = 220 bits (560), Expect = 7e-057
Identities = 112/134 (83%), Positives = 116/134 (86%), Gaps = 8/134 (5%)
Frame = +3
Query: 162 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 341
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60
Query: 342 IRGNTIKYLRVPDEVIDKVQEE--KTRTDRKPPGVGRGRGRGMDDG---GGRGRGRGAPM 506
IRGNTIKYLRVPDEVIDKVQEE K+R+DR+PPGVGRGRGRG D G GGRG GRG
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRG-DIGTKPGGRGIGRGQDD 119
Query: 507 AKMTGNRGAGRGRG 548
G G GRGRG
Sbjct: 120 GGSKG--GGGRGRG 131
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus
sylvatica GN=LSM4 PE=2 SV=1
Length = 148
Score = 215 bits (545), Expect = 4e-055
Identities = 101/114 (88%), Positives = 107/114 (93%), Gaps = 1/114 (0%)
Frame = +3
Query: 162 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 341
MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60
Query: 342 IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGMDDGGGRGRGRGA 500
IRGNTIKYLRVPDEVIDKVQEE K+R DRKPPGVGRGRGRG ++G G + RGA
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGA 114
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4
OS=Nicotiana tabacum PE=2 SV=1
Length = 146
Score = 212 bits (538), Expect = 3e-054
Identities = 104/130 (80%), Positives = 107/130 (82%), Gaps = 1/130 (0%)
Frame = +3
Query: 162 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 341
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60
Query: 342 IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAPMAKMT 518
+RGNTIKYLRVPDEVIDKVQEE K+RTDRKPPGVGR R RG D GR M
Sbjct: 61 VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120
Query: 519 GNRGAGRGRG 548
GRG+G
Sbjct: 121 DGGAKGRGKG 130
Score = 56 bits (133), Expect = 2e-007
Identities = 30/54 (55%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Frame = +3
Query: 396 VQEEKTRTDRKPPGVGR---GRGRGMDDGGGRGRGRGAPMAKMTGNRGAGRGRG 548
V + R R VGR G GRGMDDGG +GRG+G P AK +G RG GRGRG
Sbjct: 94 VGRARARGGRDDSAVGRQPKGIGRGMDDGGAKGRGKGGPSAK-SGGRGGGRGRG 146
>sp|Q9QXA5|LSM4_MOUSE U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus
GN=Lsm4 PE=2 SV=1
Length = 137
Score = 176 bits (444), Expect = 2e-043
Identities = 91/133 (68%), Positives = 103/133 (77%), Gaps = 13/133 (9%)
Frame = +3
Query: 162 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 341
MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 342 IRGNTIKYLRVPDEVIDKVQEEKTR-TDRKPPGVGRGRGRGMDDGGGR----GRGRGAPM 506
IRG+TIKYLR+PDE+ID V+EE + R P + +GRGM G GR GRGRG
Sbjct: 61 IRGSTIKYLRIPDEIIDMVREEAAKGRGRGGPQQKQQKGRGM-GGAGRGVFGGRGRG--- 116
Query: 507 AKMTGNRGAGRGR 545
G GAGRG+
Sbjct: 117 ----GIPGAGRGQ 125
>sp|Q3ZBK6|LSM4_BOVIN U6 snRNA-associated Sm-like protein LSm4 OS=Bos taurus
GN=LSM4 PE=2 SV=1
Length = 139
Score = 173 bits (437), Expect = 1e-042
Identities = 87/133 (65%), Positives = 97/133 (72%), Gaps = 11/133 (8%)
Frame = +3
Query: 162 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 341
MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 342 IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAPMAKMTG 521
IRG+TIKYLR+PDE+ID V+EE GRGRG +GRG G + G
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVV-------AKGRGRGGLQQQKQQKGRGMGGAGRGVFG 113
Query: 522 NRG----AGRGRG 548
RG G GRG
Sbjct: 114 GRGRGGIPGTGRG 126
>sp|Q9Y4Z0|LSM4_HUMAN U6 snRNA-associated Sm-like protein LSm4 OS=Homo sapiens
GN=LSM4 PE=1 SV=1
Length = 139
Score = 173 bits (437), Expect = 1e-042
Identities = 87/133 (65%), Positives = 97/133 (72%), Gaps = 11/133 (8%)
Frame = +3
Query: 162 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 341
MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60
Query: 342 IRGNTIKYLRVPDEVIDKVQEEKTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAPMAKMTG 521
IRG+TIKYLR+PDE+ID V+EE GRGRG +GRG G + G
Sbjct: 61 IRGSTIKYLRIPDEIIDMVKEEVV-------AKGRGRGGLQQQKQQKGRGMGGAGRGVFG 113
Query: 522 NRG----AGRGRG 548
RG G GRG
Sbjct: 114 GRGRGGIPGTGRG 126
>sp|Q54KX4|LSM4_DICDI Probable U6 snRNA-associated Sm-like protein LSm4
OS=Dictyostelium discoideum GN=lsm4 PE=3 SV=1
Length = 177
Score = 151 bits (380), Expect = 5e-036
Identities = 77/132 (58%), Positives = 93/132 (70%), Gaps = 4/132 (3%)
Frame = +3
Query: 162 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 341
MLPLSLL+T QGH ++VELKNGETYNG LVNCD WMNI+L+ VI TSKD D+FW++ CY
Sbjct: 1 MLPLSLLRTGQGHQIMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCY 60
Query: 342 IRGNTIKYLRVPDEVIDKVQEEK---TRTDRKPPGVGRGRGRGMDDGGGRGRGRGAPMAK 512
IRGNTIKY+ VPDE+ID V EE+ T ++ RGRGRG D GRGRG + +
Sbjct: 61 IRGNTIKYISVPDEIIDLVAEEEQTLRTTYQQRNDSNRGRGRG-DGFAGRGRGDASGRGR 119
Query: 513 MTGNRGAGRGRG 548
+ GRG G
Sbjct: 120 GDNSYRGGRGGG 131
>sp|Q19952|LSM4_CAEEL Probable U6 snRNA-associated Sm-like protein LSm4
OS=Caenorhabditis elegans GN=lsm-4 PE=3 SV=1
Length = 123
Score = 144 bits (362), Expect = 7e-034
Identities = 72/117 (61%), Positives = 88/117 (75%), Gaps = 8/117 (6%)
Frame = +3
Query: 162 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 341
+LPLSLLKTAQ HPMLVELKNGETYNGHL CD+WMNIHL +VI TSKDGD+F++M E Y
Sbjct: 2 VLPLSLLKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAY 61
Query: 342 IRGNTIKYLRVPDEVID-------KVQEEKTRTDRKPPGVGRGRGRGMDDGGGRGRG 491
+RG+TIKYLR+P+ V+D +V+ ++ R + G GRG GRG GGG RG
Sbjct: 62 VRGSTIKYLRIPETVVDLVKTEVNEVRRQQQREQSRGRGGGRG-GRGGHRGGGGNRG 117
>sp|O14352|LSM4_SCHPO Probable U6 snRNA-associated Sm-like protein LSm4
OS=Schizosaccharomyces pombe GN=lsm4 PE=2 SV=1
Length = 121
Score = 134 bits (337), Expect = 5e-031
Identities = 72/121 (59%), Positives = 86/121 (71%), Gaps = 6/121 (4%)
Frame = +3
Query: 162 MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 341
MLPL+LL QG P+LVELKNGET+NGHL NCD +MN+ LREVI T DGD+F+R+PECY
Sbjct: 1 MLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECY 60
Query: 342 IRGNTIKYLRVPDEVIDKV--QEEKTRTDRKPPGVGRG-RGR---GMDDGGGRGRGRGAP 503
IRGN IKYLR+ DEV+ +V Q+ + R +R GRG RGR G RGRGRG
Sbjct: 61 IRGNNIKYLRIQDEVLSQVAKQQAQQRENRGSRFRGRGQRGRGNYGHTAPNRRGRGRGGH 120
Query: 504 M 506
M
Sbjct: 121 M 121
>sp|Q3ZC10|SMD1_BOVIN Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus
GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 70 bits (171), Expect = 9e-012
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Frame = +3
Query: 210 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 386
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSLP 75
Query: 387 IDKV---QEEKTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAP 503
+D + E K ++ ++ GRGRGRG G GRGRGRG P
Sbjct: 76 LDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGP 117
>sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens
GN=SNRPD1 PE=1 SV=1
Length = 119
Score = 70 bits (171), Expect = 9e-012
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Frame = +3
Query: 210 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 386
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSLP 75
Query: 387 IDKV---QEEKTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAP 503
+D + E K ++ ++ GRGRGRG G GRGRGRG P
Sbjct: 76 LDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGP 117
>sp|Q4R5F6|SMD1_MACFA Small nuclear ribonucleoprotein Sm D1 OS=Macaca
fascicularis GN=SNRPD1 PE=3 SV=1
Length = 119
Score = 70 bits (171), Expect = 9e-012
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Frame = +3
Query: 210 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 386
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSLP 75
Query: 387 IDKV---QEEKTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAP 503
+D + E K ++ ++ GRGRGRG G GRGRGRG P
Sbjct: 76 LDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGP 117
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus
GN=Snrpd1 PE=2 SV=1
Length = 119
Score = 70 bits (171), Expect = 9e-012
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Frame = +3
Query: 210 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 386
+ELKNG +G + D MN HL+ V T K+ + ++ IRGN I+Y +PD +
Sbjct: 17 IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPV-QLETLSIRGNNIRYFILPDSLP 75
Query: 387 IDKV---QEEKTRTDRKPPGVGRGRGRGMDDGGGRGRGRGAP 503
+D + E K ++ ++ GRGRGRG G GRGRGRG P
Sbjct: 76 LDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGP 117
>sp|P43321|SMD3_YEAST Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces
cerevisiae GN=SMD3 PE=1 SV=1
Length = 101
Score = 63 bits (152), Expect = 1e-009
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Frame = +3
Query: 165 LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 344
+P+ LL AQGH + +EL G TY G LV + MN+ LR+VI T G M + ++
Sbjct: 6 IPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQG-AVTHMDQIFV 64
Query: 345 RGNTIKYLRVPDEVIDKVQEEKTRTDRKPP 434
RG+ IK++ VPD + + +K + PP
Sbjct: 65 RGSQIKFIVVPDLLKNAPLFKKNSSRPMPP 94
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,418,403,310
Number of Sequences: 518415
Number of Extensions: 174418403310
Number of Successful Extensions: 1059328112
Number of sequences better than 0.0: 0
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