BLASTX 7.6.2
Query= UN46738 /QuerySize=1234
(1233 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G01410.1 | Symbols: | RNase H domain-containi... 387 9e-108
TAIR9_protein||AT3G01410.2 | Symbols: | RNase H domain-containi... 387 9e-108
TAIR9_protein||AT5G51080.1 | Symbols: | RNase H domain-containi... 143 2e-034
TAIR9_protein||AT5G51080.2 | Symbols: | RNase H domain-containi... 143 2e-034
TAIR9_protein||AT5G51080.3 | Symbols: | RNase H domain-containi... 143 2e-034
TAIR9_protein||AT1G24090.1 | Symbols: | RNase H domain-containi... 139 6e-033
>TAIR9_protein||AT3G01410.1 | Symbols: | RNase H domain-containing protein |
chr3:153650-155439 REVERSE
Length = 295
Score = 387 bits (993), Expect = 9e-108
Identities = 215/307 (70%), Positives = 242/307 (78%), Gaps = 14/307 (4%)
Frame = +1
Query: 55 GSGMGEDEKDAFYVVRKGDIIGVYRSLSECQQQAPSSVTDPPMSVYKGYGWPPQGAQELI 234
GS M EDEKDAFY+VRKGDIIGVYRSLSECQ QA SSV+ P MSVYKGYGW P+GA++L+
Sbjct: 2 GSTM-EDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGW-PKGAEDLL 59
Query: 235 SSFGLKNALFSVNASHLKHDDSSSVFGKLIPCPLQQPSSSSSSYQGESLDKPPSQPKRLL 414
SSFG+KNALFSVNASH+K D FGKLIPCP+QQPSSS QGESL+K S P + L
Sbjct: 60 SSFGIKNALFSVNASHVKDD----AFGKLIPCPVQQPSSS----QGESLNK--SSPSKRL 109
Query: 415 KQMETDESSFFPSSHPQKHLKIENSGGGGMVPRPSTQRPILQNEDSCSIEFDGASKGNPG 594
+ M + ES F S PQK LKIEN + T+ PI QN DSC+IEFDGASKGNPG
Sbjct: 110 QDMGSGESGSFSPSPPQKQLKIENDMLRRIPSSLLTRTPIRQN-DSCTIEFDGASKGNPG 168
Query: 595 KAGAGAVLRSSHDNSVLFYLREGVGTATNNVAEYRALILGLKSALLKGFTNVRVQGYSML 774
KAGAGAVLR+S DNSVLFYLREGVG ATNNVAEYRAL+LGL+SAL KGF NV V G SML
Sbjct: 169 KAGAGAVLRAS-DNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSML 227
Query: 775 VCMQVQDKWQTKHPKMAELCKQAKDLIKQFKSFQIQHIDREFNSVADAQANHAINLPEGQ 954
VCMQVQ W+T HPKMAELCKQAK+L+ FK+F I+HI RE NS AD QAN AI L +GQ
Sbjct: 228 VCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQANSAIFLADGQ 287
Query: 955 TKEIAGG 975
T+ I+GG
Sbjct: 288 TQVISGG 294
>TAIR9_protein||AT3G01410.2 | Symbols: | RNase H domain-containing protein |
chr3:153650-155439 REVERSE
Length = 295
Score = 387 bits (993), Expect = 9e-108
Identities = 215/307 (70%), Positives = 242/307 (78%), Gaps = 14/307 (4%)
Frame = +1
Query: 55 GSGMGEDEKDAFYVVRKGDIIGVYRSLSECQQQAPSSVTDPPMSVYKGYGWPPQGAQELI 234
GS M EDEKDAFY+VRKGDIIGVYRSLSECQ QA SSV+ P MSVYKGYGW P+GA++L+
Sbjct: 2 GSTM-EDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGW-PKGAEDLL 59
Query: 235 SSFGLKNALFSVNASHLKHDDSSSVFGKLIPCPLQQPSSSSSSYQGESLDKPPSQPKRLL 414
SSFG+KNALFSVNASH+K D FGKLIPCP+QQPSSS QGESL+K S P + L
Sbjct: 60 SSFGIKNALFSVNASHVKDD----AFGKLIPCPVQQPSSS----QGESLNK--SSPSKRL 109
Query: 415 KQMETDESSFFPSSHPQKHLKIENSGGGGMVPRPSTQRPILQNEDSCSIEFDGASKGNPG 594
+ M + ES F S PQK LKIEN + T+ PI QN DSC+IEFDGASKGNPG
Sbjct: 110 QDMGSGESGSFSPSPPQKQLKIENDMLRRIPSSLLTRTPIRQN-DSCTIEFDGASKGNPG 168
Query: 595 KAGAGAVLRSSHDNSVLFYLREGVGTATNNVAEYRALILGLKSALLKGFTNVRVQGYSML 774
KAGAGAVLR+S DNSVLFYLREGVG ATNNVAEYRAL+LGL+SAL KGF NV V G SML
Sbjct: 169 KAGAGAVLRAS-DNSVLFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSML 227
Query: 775 VCMQVQDKWQTKHPKMAELCKQAKDLIKQFKSFQIQHIDREFNSVADAQANHAINLPEGQ 954
VCMQVQ W+T HPKMAELCKQAK+L+ FK+F I+HI RE NS AD QAN AI L +GQ
Sbjct: 228 VCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEADKQANSAIFLADGQ 287
Query: 955 TKEIAGG 975
T+ I+GG
Sbjct: 288 TQVISGG 294
>TAIR9_protein||AT5G51080.1 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770675 REVERSE
Length = 323
Score = 143 bits (360), Expect = 2e-034
Identities = 71/138 (51%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Frame = +1
Query: 547 DSCSIEFDGASKGNPGKAGAGAVLRSSHDNSVLFYLREGVGTATNNVAEYRALILGLKSA 726
++C IEFDGASKGNPG +GA AVL+ + D S++F +R+G+G ATNN AEY LILGLK A
Sbjct: 184 ETCIIEFDGASKGNPGLSGAAAVLK-TEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHA 242
Query: 727 LLKGFTNVRVQGYSMLVCMQVQDKWQTKHPKMAELCKQAKDLIKQFKSFQIQHIDREFNS 906
+ KG+T ++V+ S LVCMQ++ +W+ H +++L K+AK L + SF+I H+ R NS
Sbjct: 243 IEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNS 302
Query: 907 VADAQANHAINLPEGQTK 960
AD QAN A L EG+ +
Sbjct: 303 DADEQANMAARLSEGEVE 320
Score = 90 bits (222), Expect = 2e-018
Identities = 50/99 (50%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Frame = +1
Query: 70 EDEKDAFYVVRKGDIIGVYRSLSECQQQAPSSVTDPPMSVYKGYGWPPQGAQELISSFGL 249
+ EKDAF+VVRKGDI+G+Y+ L +CQ Q SSV DPP+SVYKGY + +E +S+ GL
Sbjct: 75 DKEKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSL-LKDTEECLSTVGL 133
Query: 250 KNALFSVNASHLKHDDSSSVFGKLIPCPLQQ--PSSSSS 360
K L+ A LK D +FG L PC Q PS+S S
Sbjct: 134 KKPLYVFRALDLKED----MFGALTPCLFQDQLPSASMS 168
>TAIR9_protein||AT5G51080.2 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770675 REVERSE
Length = 323
Score = 143 bits (360), Expect = 2e-034
Identities = 71/138 (51%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Frame = +1
Query: 547 DSCSIEFDGASKGNPGKAGAGAVLRSSHDNSVLFYLREGVGTATNNVAEYRALILGLKSA 726
++C IEFDGASKGNPG +GA AVL+ + D S++F +R+G+G ATNN AEY LILGLK A
Sbjct: 184 ETCIIEFDGASKGNPGLSGAAAVLK-TEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHA 242
Query: 727 LLKGFTNVRVQGYSMLVCMQVQDKWQTKHPKMAELCKQAKDLIKQFKSFQIQHIDREFNS 906
+ KG+T ++V+ S LVCMQ++ +W+ H +++L K+AK L + SF+I H+ R NS
Sbjct: 243 IEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNS 302
Query: 907 VADAQANHAINLPEGQTK 960
AD QAN A L EG+ +
Sbjct: 303 DADEQANMAARLSEGEVE 320
Score = 90 bits (222), Expect = 2e-018
Identities = 50/99 (50%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Frame = +1
Query: 70 EDEKDAFYVVRKGDIIGVYRSLSECQQQAPSSVTDPPMSVYKGYGWPPQGAQELISSFGL 249
+ EKDAF+VVRKGDI+G+Y+ L +CQ Q SSV DPP+SVYKGY + +E +S+ GL
Sbjct: 75 DKEKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSL-LKDTEECLSTVGL 133
Query: 250 KNALFSVNASHLKHDDSSSVFGKLIPCPLQQ--PSSSSS 360
K L+ A LK D +FG L PC Q PS+S S
Sbjct: 134 KKPLYVFRALDLKED----MFGALTPCLFQDQLPSASMS 168
>TAIR9_protein||AT5G51080.3 | Symbols: | RNase H domain-containing protein |
chr5:20769022-20770486 REVERSE
Length = 260
Score = 143 bits (360), Expect = 2e-034
Identities = 71/138 (51%), Positives = 99/138 (71%), Gaps = 1/138 (0%)
Frame = +1
Query: 547 DSCSIEFDGASKGNPGKAGAGAVLRSSHDNSVLFYLREGVGTATNNVAEYRALILGLKSA 726
++C IEFDGASKGNPG +GA AVL+ + D S++F +R+G+G ATNN AEY LILGLK A
Sbjct: 121 ETCIIEFDGASKGNPGLSGAAAVLK-TEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHA 179
Query: 727 LLKGFTNVRVQGYSMLVCMQVQDKWQTKHPKMAELCKQAKDLIKQFKSFQIQHIDREFNS 906
+ KG+T ++V+ S LVCMQ++ +W+ H +++L K+AK L + SF+I H+ R NS
Sbjct: 180 IEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNS 239
Query: 907 VADAQANHAINLPEGQTK 960
AD QAN A L EG+ +
Sbjct: 240 DADEQANMAARLSEGEVE 257
Score = 90 bits (222), Expect = 2e-018
Identities = 50/99 (50%), Positives = 64/99 (64%), Gaps = 7/99 (7%)
Frame = +1
Query: 70 EDEKDAFYVVRKGDIIGVYRSLSECQQQAPSSVTDPPMSVYKGYGWPPQGAQELISSFGL 249
+ EKDAF+VVRKGDI+G+Y+ L +CQ Q SSV DPP+SVYKGY + +E +S+ GL
Sbjct: 12 DKEKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSL-LKDTEECLSTVGL 70
Query: 250 KNALFSVNASHLKHDDSSSVFGKLIPCPLQQ--PSSSSS 360
K L+ A LK D +FG L PC Q PS+S S
Sbjct: 71 KKPLYVFRALDLKED----MFGALTPCLFQDQLPSASMS 105
>TAIR9_protein||AT1G24090.1 | Symbols: | RNase H domain-containing protein |
chr1:8520834-8524690 FORWARD
Length = 536
Score = 139 bits (348), Expect = 6e-033
Identities = 71/138 (51%), Positives = 100/138 (72%), Gaps = 4/138 (2%)
Frame = +1
Query: 541 NEDSCSIEFDGASKGNPGKAGAGAVLRSSHDNSVLFYLREGVGTATNNVAEYRALILGLK 720
++++C IEFDGASKGNPG +GA AVL+ + D S++ +R+G+G ATNN AEY ALILGLK
Sbjct: 213 SDETCFIEFDGASKGNPGLSGAAAVLK-TEDGSLICRVRQGLGIATNNAAEYHALILGLK 271
Query: 721 SALLKGFTNVRVQGYSMLVCM---QVQDKWQTKHPKMAELCKQAKDLIKQFKSFQIQHID 891
A+ KG+ N++V+G S LVCM Q++ +W+ H +A+L K+AK L + SF+I H+
Sbjct: 272 YAIEKGYKNIKVKGDSKLVCMQKQQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVL 331
Query: 892 REFNSVADAQANHAINLP 945
R N+ AD QAN A+ LP
Sbjct: 332 RNLNADADEQANLAVRLP 349
Score = 100 bits (248), Expect = 2e-021
Identities = 51/93 (54%), Positives = 66/93 (70%), Gaps = 5/93 (5%)
Frame = +1
Query: 70 EDEKDAFYVVRKGDIIGVYRSLSECQQQAPSSVTDPPMSVYKGYGWPPQGAQELISSFGL 249
+ EKDAF+VVRKGD+IG+Y+ LS+CQ Q SSV D P+SVYKGY P+ +E +SS GL
Sbjct: 78 DKEKDAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPVSVYKGYSL-PKDTEEYLSSVGL 136
Query: 250 KNALFSVNASHLKHDDSSSVFGKLIPCPLQQPS 348
K L+S+ AS LK D +FG L PC Q+P+
Sbjct: 137 KKPLYSLRASDLKDD----MFGALTPCLFQEPA 165
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,395,272,246
Number of Sequences: 33410
Number of Extensions: 22395272246
Number of Successful Extensions: 702467102
Number of sequences better than 0.0: 0
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