BLASTX 7.6.2
Query= UN47100 /QuerySize=845
(844 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G04600.1 | Symbols: | RNA recognition motif (... 361 5e-100
TAIR9_protein||AT5G51300.1 | Symbols: | splicing factor-related... 54 1e-007
TAIR9_protein||AT5G51300.2 | Symbols: | splicing factor-related... 54 1e-007
TAIR9_protein||AT5G51300.3 | Symbols: | splicing factor-related... 54 1e-007
TAIR9_protein||AT3G47120.1 | Symbols: | RNA recognition motif (... 49 3e-006
TAIR9_protein||AT5G47320.1 | Symbols: RPS19 | RPS19 (RIBOSOMAL P... 49 4e-006
TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA bindi... 48 8e-006
>TAIR9_protein||AT5G04600.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:1323700-1325486 FORWARD
Length = 223
Score = 361 bits (924), Expect = 5e-100
Identities = 181/222 (81%), Positives = 203/222 (91%), Gaps = 7/222 (3%)
Frame = +1
Query: 43 KAKKALKKNMKKISASAAAAAAAPSQLAVPQNQKPSADFLPLGGGPARKAPV-SKPVESK 219
KAKKALKKNMKK++ASA++ SQL +PQN KPSADFLPL GGPARKAPV + P+++K
Sbjct: 4 KAKKALKKNMKKVAASASS-----SQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNK 58
Query: 220 ATVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAA 399
ATVLYIGR+PHGFYETEIEAFF+QFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAA
Sbjct: 59 ATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAA 118
Query: 400 GAMNDYLL-EHMLQVRVIPPEHVKPNLWKGFKSQYKPVDWVQIERKQHNKERTLEEHRKM 576
GAMNDYLL EHML+V VI PE+VKPNLW+GFK +KPVD VQIER+Q NKERTLEEHRKM
Sbjct: 119 GAMNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKM 178
Query: 577 LHKVVKRDQKRRKRIEAAGIQYQCPELVGNTQPLPNKIKFSE 702
L K+VK+DQKRRKRIEAAGI+Y+CPELVGNTQP+P +IKFSE
Sbjct: 179 LQKIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRIKFSE 220
>TAIR9_protein||AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 805
Score = 54 bits (128), Expect = 1e-007
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Frame = +1
Query: 166 LGGGPARKAPVSKPVESKATVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKS 345
LG P + P SK E T LYIG LP + + F+ FG + +V +++ TG S
Sbjct: 465 LGSTPTK--PPSK--EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLS 520
Query: 346 KHFGFIQFEDPEVAEIAAGAMNDYLLE-HMLQVRVI---PPEHVKP 471
K +GF+++ D ++A A AMN Y E L VR+ PP P
Sbjct: 521 KGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAPP 566
>TAIR9_protein||AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 805
Score = 54 bits (128), Expect = 1e-007
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Frame = +1
Query: 166 LGGGPARKAPVSKPVESKATVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKS 345
LG P + P SK E T LYIG LP + + F+ FG + +V +++ TG S
Sbjct: 465 LGSTPTK--PPSK--EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLS 520
Query: 346 KHFGFIQFEDPEVAEIAAGAMNDYLLE-HMLQVRVI---PPEHVKP 471
K +GF+++ D ++A A AMN Y E L VR+ PP P
Sbjct: 521 KGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAPP 566
>TAIR9_protein||AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE
Length = 805
Score = 54 bits (128), Expect = 1e-007
Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Frame = +1
Query: 166 LGGGPARKAPVSKPVESKATVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKS 345
LG P + P SK E T LYIG LP + + F+ FG + +V +++ TG S
Sbjct: 465 LGSTPTK--PPSK--EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLS 520
Query: 346 KHFGFIQFEDPEVAEIAAGAMNDYLLE-HMLQVRVI---PPEHVKP 471
K +GF+++ D ++A A AMN Y E L VR+ PP P
Sbjct: 521 KGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAPP 566
>TAIR9_protein||AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351334-17352769 REVERSE
Length = 353
Score = 49 bits (116), Expect = 3e-006
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = +1
Query: 229 LYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 408
+Y+G +P E ++ A F+Q+G + V + R+K TGKSK F F+ +ED +A +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 409 NDYLL 423
N L+
Sbjct: 98 NGALV 102
>TAIR9_protein||AT5G47320.1 | Symbols: RPS19 | RPS19 (RIBOSOMAL PROTEIN S19);
RNA binding | chr5:19203801-19204951 FORWARD
Length = 213
Score = 49 bits (115), Expect = 4e-006
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Frame = +1
Query: 187 KAPVSKPVES-------KATVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKS 345
K V+ PV S +T LYIG L G E ++ F+ F V RV NK TG+S
Sbjct: 12 KQGVNVPVSSMLGSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRS 71
Query: 346 KHFGFIQFEDPEVAEIAAGAMN 411
+ +GF+ F + A A AMN
Sbjct: 72 RGYGFVNFISEDSANSAISAMN 93
>TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA binding / nucleic
acid binding / nucleotide binding | chr3:4429564-4431602 REVERSE
Length = 263
Score = 48 bits (112), Expect = 8e-006
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +1
Query: 223 TVLYIGRLPHGFYETEIEAFFTQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAG 402
T L + L H + ++ F QFG VK + + R+ TG + FGFIQF DP A A
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 403 AMNDYLL 423
M+ YLL
Sbjct: 97 QMDGYLL 103
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,534,244,245
Number of Sequences: 33410
Number of Extensions: 22534244245
Number of Successful Extensions: 707664446
Number of sequences better than 0.0: 0
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