BLASTX 7.6.2
Query= UN47136 /QuerySize=917
(916 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297851804|ref|XP_002893783.1| predicted protein [Arabidopsis ... 76 6e-012
gi|297810423|ref|XP_002873095.1| predicted protein [Arabidopsis ... 75 1e-011
gi|297810419|ref|XP_002873093.1| predicted protein [Arabidopsis ... 73 5e-011
gi|297806309|ref|XP_002871038.1| predicted protein [Arabidopsis ... 71 2e-010
gi|297810421|ref|XP_002873094.1| predicted protein [Arabidopsis ... 71 2e-010
gi|297831128|ref|XP_002883446.1| predicted protein [Arabidopsis ... 70 3e-010
gi|297806867|ref|XP_002871317.1| predicted protein [Arabidopsis ... 69 1e-009
gi|297834768|ref|XP_002885266.1| hypothetical protein ARALYDRAFT... 69 1e-009
gi|145334285|ref|NP_001078524.1| RNA-binding (RRM/RBD/RNP motifs... 66 6e-009
gi|15242768|ref|NP_195968.1| RNA-binding (RRM/RBD/RNP motifs) fa... 66 8e-009
gi|297847164|ref|XP_002891463.1| hypothetical protein ARALYDRAFT... 62 1e-007
gi|7378635|emb|CAB83311.1| putative protein [Arabidopsis thaliana] 61 2e-007
gi|9294322|dbj|BAB02219.1| unnamed protein product [Arabidopsis ... 59 1e-006
gi|15229678|ref|NP_188491.1| nucleolin [Arabidopsis thaliana] 59 1e-006
gi|15222009|ref|NP_175322.1| nucleolin [Arabidopsis thaliana] 58 2e-006
gi|18410189|ref|NP_565046.1| RNA-binding (RRM/RBD/RNP motifs) fa... 58 2e-006
gi|297818940|ref|XP_002877353.1| predicted protein [Arabidopsis ... 58 2e-006
gi|7770338|gb|AAF69708.1|AC016041_13 F27J15.29 [Arabidopsis thal... 57 4e-006
>gi|297851804|ref|XP_002893783.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 276
Score = 76 bits (186), Expect = 6e-012
Identities = 38/80 (47%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Frame = +3
Query: 150 PRALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDG 329
P+ + V GY+ +LPE DI+ L + FSSCG++T V++PKD + LD AL+ + G G
Sbjct: 160 PQRKMIVTGYDTSLPEIDIQIRLSNHFSSCGEITNVMIPKDA--NGGLDSTALISILGAG 217
Query: 330 AEEKALQLNGTNVGGWNALV 389
+ EKAL+L G +VGGWN V
Sbjct: 218 SVEKALELGGCDVGGWNIAV 237
>gi|297810423|ref|XP_002873095.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 227
Score = 75 bits (184), Expect = 1e-011
Identities = 54/137 (39%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Frame = +3
Query: 138 ISGKPR-ALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVI 314
+S KPR ISV GY+ L E +K L F+SCG +T + VP+D L +
Sbjct: 20 VSRKPRKTTISVEGYDTRLREYTLKLALEKHFASCGKITTIYVPRDYKRG-ILKSVTFMW 78
Query: 315 LFGDGAEEKALQLNGTNVGGWNALVKVESDEEDEEAARYRSYLINELMNDPKFWYGVSVR 494
+ GD AEEKALQL+GT+VGGW ALVK ++D + L V V
Sbjct: 79 IKGDDAEEKALQLSGTDVGGWTALVKPAPSQKDIMDPWCPAMLSKHETQ------RVRVT 132
Query: 495 GYDTNLPVDEVETVLKE 545
GYDT LP +++ L E
Sbjct: 133 GYDTWLPEIDIQIALCE 149
>gi|297810419|ref|XP_002873093.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 161
Score = 73 bits (178), Expect = 5e-011
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = +3
Query: 162 ISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDGAEEK 341
ISV GYN L E ++ L F+SCG +T++ VP+D L R + V + GD AEEK
Sbjct: 31 ISVEGYNTTLKEYPLRLALAKHFASCGKITQIYVPRD-FKKKLLKRASFVWIEGDDAEEK 89
Query: 342 ALQLNGTNVGGWNALVK 392
ALQL+GT+VGGW A+VK
Sbjct: 90 ALQLSGTDVGGWTAIVK 106
>gi|297806309|ref|XP_002871038.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 248
Score = 71 bits (173), Expect = 2e-010
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 3/127 (2%)
Frame = +3
Query: 162 ISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDGAEEK 341
+SV GY+ L + +K L F+SCG++T + VP D + L A + + G+GAEEK
Sbjct: 47 VSVEGYDTWLRKYPLKLVLEKHFASCGEITNIYVPTDFERG-ILKSVAFMRIEGEGAEEK 105
Query: 342 ALQLNGTNVGGWNALVK-VESDEEDEEAARYRSYLINELMNDPKFWYGVSVRGYDTNLPV 518
ALQL+GT+VGGW A+VK S + + Y D K + + V GYDT+LP
Sbjct: 106 ALQLSGTDVGGWTAIVKPAPSQKVFMDDPWYAGPRCAAAPADTK-THRIRVTGYDTSLPE 164
Query: 519 DEVETVL 539
+++ L
Sbjct: 165 IDMQIAL 171
>gi|297810421|ref|XP_002873094.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 71 bits (173), Expect = 2e-010
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 3/127 (2%)
Frame = +3
Query: 162 ISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDGAEEK 341
ISV GY+ L + +K L F+SCG++T + VP D + L A + + G+GAEEK
Sbjct: 34 ISVEGYDTWLRKYPLKLVLEKHFASCGEITNIYVPTDFERG-ILKSVAFMRIEGEGAEEK 92
Query: 342 ALQLNGTNVGGWNALVK-VESDEEDEEAARYRSYLINELMNDPKFWYGVSVRGYDTNLPV 518
ALQL+GT+VGGW A+VK S + + Y D K + + V GYDT+LP
Sbjct: 93 ALQLSGTDVGGWTAIVKPAPSQKVFMDDPWYAGPRCAAAPADTK-THMIRVTGYDTSLPK 151
Query: 519 DEVETVL 539
+++ L
Sbjct: 152 IDMQIAL 158
>gi|297831128|ref|XP_002883446.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 319
Score = 70 bits (171), Expect = 3e-010
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 3/127 (2%)
Frame = +3
Query: 162 ISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDGAEEK 341
+SV GY+ L + +K L F+SCG++T + VP D + L A + + G+GAEEK
Sbjct: 47 VSVEGYDTWLRKYPLKLVLEKHFASCGEITNIYVPTDFERG-ILKSVAFMRIEGEGAEEK 105
Query: 342 ALQLNGTNVGGWNALVK-VESDEEDEEAARYRSYLINELMNDPKFWYGVSVRGYDTNLPV 518
ALQL+GT++GGW A+VK + + RY D K + + + GYDT+LP
Sbjct: 106 ALQLSGTDIGGWTAIVKPAPWQKVFMDDPRYAGPRCAAAPADTK-THMIRITGYDTSLPK 164
Query: 519 DEVETVL 539
+++ L
Sbjct: 165 IDMQIAL 171
>gi|297806867|ref|XP_002871317.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 313
Score = 69 bits (166), Expect = 1e-009
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Frame = +3
Query: 159 LISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDGAEE 338
++SV+G++P LPE D++ L FSSCG+VT + + + P + A + L G+ A E
Sbjct: 132 IVSVSGFDPWLPEHDLESSLRRHFSSCGEVTNISIHRGP--GGIIKSPAFIFLLGEDAAE 189
Query: 339 KALQLNGTNVGGWNALVKV 395
+AL+L+G++VGGW VKV
Sbjct: 190 QALELSGSDVGGWKVAVKV 208
>gi|297834768|ref|XP_002885266.1| hypothetical protein ARALYDRAFT_479366
[Arabidopsis lyrata subsp. lyrata]
Length = 564
Score = 69 bits (166), Expect = 1e-009
Identities = 45/117 (38%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Frame = +3
Query: 78 LRSEREEFESEAAEKAFADRISGKPRALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRV 257
L +ER + S K G I V G+N +L ED+IKKEL +FS+CG+VTRV
Sbjct: 386 LANERGQRNSNPGRKG-----EGSQSRTIFVRGFNSSLGEDEIKKELRSLFSNCGEVTRV 440
Query: 258 IVPKDPDHSPNLDRRALVILFGDGAEEKALQLNGTNVGGWNALVKVESDEEDEEAAR 428
VP D + R L + ++ALQL G+ +GGWN V+ ES D + R
Sbjct: 441 HVPTDRETGA---CRGLAYIDLTSGFDEALQLRGSEIGGWNIHVE-ESRPRDSDEGR 493
>gi|145334285|ref|NP_001078524.1| RNA-binding (RRM/RBD/RNP motifs) family
protein [Arabidopsis thaliana]
Length = 226
Score = 66 bits (160), Expect = 6e-009
Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Frame = +3
Query: 141 SGKPR---ALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALV 311
S KPR ISV GY+ L E +K L F+SCG +T + VP+D + L A +
Sbjct: 21 SRKPRIPWTKISVEGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDFERG-ILKSVAFM 79
Query: 312 ILFGDGAEEKALQLNGTNVGGWNALVK 392
+ G+G EEKAL L+GT+ GGW A+VK
Sbjct: 80 CIKGEGGEEKALLLSGTDAGGWTAIVK 106
>gi|15242768|ref|NP_195968.1| RNA-binding (RRM/RBD/RNP motifs) family protein
[Arabidopsis thaliana]
Length = 321
Score = 66 bits (159), Expect = 8e-009
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +3
Query: 162 ISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDGAEEK 341
I V GY+ +L E ++ L F+SCG++T++ VP+D L + + + G+GAE+K
Sbjct: 26 ICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVPRD-FKKKILKSVSFMWIKGEGAEDK 84
Query: 342 ALQLNGTNVGGWNALVKVESDEE 410
ALQL+GT+VGGW +VK + E
Sbjct: 85 ALQLSGTDVGGWTVIVKPKPKHE 107
>gi|297847164|ref|XP_002891463.1| hypothetical protein ARALYDRAFT_474037
[Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 62 bits (148), Expect = 1e-007
Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Frame = +3
Query: 162 ISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDGAEEK 341
+ V G++ +L EDDI+ L + FSSCG++ V VP D D + + + F +G +EK
Sbjct: 400 VFVKGFDSSLSEDDIRNALTEHFSSCGEIKSVSVPMDRDTGNS--KGIAYVAFSEG-KEK 456
Query: 342 ALQLNGTNVGGWNALV 389
AL+LNG+++GGW+ +V
Sbjct: 457 ALELNGSDMGGWSLVV 472
>gi|7378635|emb|CAB83311.1| putative protein [Arabidopsis thaliana]
Length = 248
Score = 61 bits (147), Expect = 2e-007
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +3
Query: 159 LISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDGAEE 338
L GY+ L E +K L F+SCG +T + VP+D + L A + + G+G EE
Sbjct: 13 LSKAPGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDFERG-ILKSVAFMCIKGEGGEE 71
Query: 339 KALQLNGTNVGGWNALVK 392
KAL L+GT+ GGW A+VK
Sbjct: 72 KALLLSGTDAGGWTAIVK 89
>gi|9294322|dbj|BAB02219.1| unnamed protein product [Arabidopsis thaliana]
Length = 610
Score = 59 bits (140), Expect = 1e-006
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Frame = +3
Query: 144 GKPRALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFG 323
G I V G++ +L ED+IKKEL FS CG+VTRV VP D + + R +
Sbjct: 449 GSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGAS---RGFAYIDL 505
Query: 324 DGAEEKALQLNGTNVGGWNALVKVESDEEDEEAAR 428
++ALQL+G+ +GG N V+ ES D + R
Sbjct: 506 TSGFDEALQLSGSEIGGGNIHVE-ESRPRDSDEGR 539
>gi|15229678|ref|NP_188491.1| nucleolin [Arabidopsis thaliana]
Length = 636
Score = 59 bits (140), Expect = 1e-006
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Frame = +3
Query: 144 GKPRALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFG 323
G I V G++ +L ED+IKKEL FS CG+VTRV VP D + + R +
Sbjct: 475 GSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGAS---RGFAYIDL 531
Query: 324 DGAEEKALQLNGTNVGGWNALVKVESDEEDEEAAR 428
++ALQL+G+ +GG N V+ ES D + R
Sbjct: 532 TSGFDEALQLSGSEIGGGNIHVE-ESRPRDSDEGR 565
>gi|15222009|ref|NP_175322.1| nucleolin [Arabidopsis thaliana]
Length = 557
Score = 58 bits (138), Expect = 2e-006
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Frame = +3
Query: 81 RSEREEFESEAAEKAFADRISGKPRALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVI 260
R ER F ++ F G I V G++ +L EDDIK L + FSSCG++ V
Sbjct: 378 RGERPAFTPQSGN--FRSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVS 435
Query: 261 VPKDPDHSPNLDRRALVILFGDGAEEKALQLNGTNVGGWNALV 389
VP D D + + + L +EKAL+LNG+++GG LV
Sbjct: 436 VPIDRDTG---NSKGIAYLEFSEGKEKALELNGSDMGGGFYLV 475
>gi|18410189|ref|NP_565046.1| RNA-binding (RRM/RBD/RNP motifs) family protein
[Arabidopsis thaliana]
Length = 335
Score = 58 bits (138), Expect = 2e-006
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Frame = +3
Query: 111 AAEKAFADRISGKPRALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPN 290
A + F+ ++G+ SV G++ +LP DDIK L FSS G++TRV VP P H
Sbjct: 222 AKDSLFSVGVNGRS---FSVTGFDASLPVDDIKSALSKYFSSFGEITRVFVP--PSHGTG 276
Query: 291 LDRRALVILFGDGAEEKALQLNGTNVGGWNALV 389
I +GA EKAL+L +VGGW+ +V
Sbjct: 277 GSLGYAYIDLKEGA-EKALELGRHDVGGWDLVV 308
>gi|297818940|ref|XP_002877353.1| predicted protein [Arabidopsis lyrata subsp.
lyrata]
Length = 122
Score = 58 bits (138), Expect = 2e-006
Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Frame = +3
Query: 228 FSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDGAEEKALQLNGTNVGGWNALVK 392
FSSCG + + VP+D + S L R A + + G+GAE+KAL+L+GT+VGGW A+ K
Sbjct: 17 FSSCGKIKHIYVPRDFE-SGTLKRVAFMRIEGEGAEDKALELSGTDVGGWTAIEK 70
>gi|7770338|gb|AAF69708.1|AC016041_13 F27J15.29 [Arabidopsis thaliana]
Length = 193
Score = 57 bits (136), Expect = 4e-006
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Frame = +3
Query: 81 RSEREEFESEAAEKA---FADRISGKPRALISVAGYNPNLPEDDIKKELIDIFSSCGDVT 251
R RE + + KA F G I V G++ +L EDDIK L + FSSCG++
Sbjct: 17 REVREARDPHSLHKAGINFRSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIK 76
Query: 252 RVIVPKDPDHSPNLDRRALVILFGDGAEEKALQLNGTNVGGWNALV 389
V VP D D + + + L +EKAL+LNG+++GG LV
Sbjct: 77 NVSVPIDRDTG---NSKGIAYLEFSEGKEKALELNGSDMGGGFYLV 119
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,114,893,815,936
Number of Sequences: 15229318
Number of Extensions: 5114893815936
Number of Successful Extensions: 1178633539
Number of sequences better than 0.0: 0
|
