BLASTX 7.6.2
Query= UN47136 /QuerySize=917
(916 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (... 67 1e-011
TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding | ch... 66 2e-011
TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / ... 66 3e-011
TAIR9_protein||AT3G18610.1 | Symbols: ATRANGAP1, PARLL1 | ATRANG... 59 5e-009
TAIR9_protein||AT1G72800.1 | Symbols: | nuM1-related | chr1:273... 58 9e-009
TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1... 58 9e-009
TAIR9_protein||AT5G53700.1 | Symbols: | INVOLVED IN: biological... 58 9e-009
TAIR9_protein||AT5G05430.1 | Symbols: | FUNCTIONS IN: molecular... 49 4e-006
>TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:2805779-2806912 REVERSE
Length = 199
Score = 67 bits (163), Expect = 1e-011
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Frame = +3
Query: 162 ISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDGAEEK 341
ISV GY+ LP + ++ EL +FS CG++T V +P+ + S L A + G+G +K
Sbjct: 25 ISVTGYDIELPREHVESELKKLFSPCGEITDVHIPETRNSS--LWSHAFIYFVGEGTADK 82
Query: 342 ALQLNGTNVGGWNALVKVESDEEDEEAARYR-SYLINE 452
ALQLNG+++GGW V E+D +E + YL+ E
Sbjct: 83 ALQLNGSDMGGWT--VDAEADPFPKEEDNFSIVYLLGE 118
>TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding |
chr5:873804-875025 REVERSE
Length = 227
Score = 66 bits (160), Expect = 2e-011
Identities = 39/87 (44%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Frame = +3
Query: 141 SGKPR---ALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALV 311
S KPR ISV GY+ L E +K L F+SCG +T + VP+D + L A +
Sbjct: 21 SRKPRIPWTKISVEGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDFERG-ILKSVAFM 79
Query: 312 ILFGDGAEEKALQLNGTNVGGWNALVK 392
+ G+G EEKAL L+GT+ GGW A+VK
Sbjct: 80 CIKGEGGEEKALLLSGTDAGGWTAIVK 106
>TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / nucleotide
binding | chr5:869208-870855 REVERSE
Length = 322
Score = 66 bits (159), Expect = 3e-011
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = +3
Query: 162 ISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDGAEEK 341
I V GY+ +L E ++ L F+SCG++T++ VP+D L + + + G+GAE+K
Sbjct: 26 ICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVPRD-FKKKILKSVSFMWIKGEGAEDK 84
Query: 342 ALQLNGTNVGGWNALVKVESDEE 410
ALQL+GT+VGGW +VK + E
Sbjct: 85 ALQLSGTDVGGWTVIVKPKPKHE 107
Score = 59 bits (142), Expect = 3e-009
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +3
Query: 150 PRALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFGDG 329
P ISV GY+ +L + ++ L F SCG++ V VP D + L A + + G+G
Sbjct: 111 PITTISVEGYDTSLQKYLLELILEKHFDSCGEIRHVYVPTDYERGV-LKSVAFLRIEGEG 169
Query: 330 AEEKALQLNGTNVGGWNALVK 392
AE+KALQL+GT+V GW +VK
Sbjct: 170 AEDKALQLSGTDVVGWTVIVK 190
>TAIR9_protein||AT3G18610.1 | Symbols: ATRANGAP1, PARLL1 | ATRANGAP1 (RAN
GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding / nucleotide binding
| chr3:6404270-6407822 REVERSE
Length = 637
Score = 59 bits (140), Expect = 5e-009
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Frame = +3
Query: 144 GKPRALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILFG 323
G I V G++ +L ED+IKKEL FS CG+VTRV VP D + + R +
Sbjct: 475 GSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGAS---RGFAYIDL 531
Query: 324 DGAEEKALQLNGTNVGGWNALVKVESDEEDEEAAR 428
++ALQL+G+ +GG N V+ ES D + R
Sbjct: 532 TSGFDEALQLSGSEIGGGNIHVE-ESRPRDSDEGR 565
>TAIR9_protein||AT1G72800.1 | Symbols: | nuM1-related | chr1:27397266-27398273
FORWARD
Length = 336
Score = 58 bits (138), Expect = 9e-009
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Frame = +3
Query: 111 AAEKAFADRISGKPRALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPN 290
A + F+ ++G+ SV G++ +LP DDIK L FSS G++TRV VP P H
Sbjct: 222 AKDSLFSVGVNGRS---FSVTGFDASLPVDDIKSALSKYFSSFGEITRVFVP--PSHGTG 276
Query: 291 LDRRALVILFGDGAEEKALQLNGTNVGGWNALV 389
I +GA EKAL+L +VGGW+ +V
Sbjct: 277 GSLGYAYIDLKEGA-EKALELGRHDVGGWDLVV 308
>TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1; nucleic acid
binding / nucleotide binding | chr1:18098186-18101422 FORWARD
Length = 558
Score = 58 bits (138), Expect = 9e-009
Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Frame = +3
Query: 81 RSEREEFESEAAEKAFADRISGKPRALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVI 260
R ER F ++ F G I V G++ +L EDDIK L + FSSCG++ V
Sbjct: 378 RGERPAFTPQSGN--FRSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVS 435
Query: 261 VPKDPDHSPNLDRRALVILFGDGAEEKALQLNGTNVGGWNALV 389
VP D D + + + L +EKAL+LNG+++GG LV
Sbjct: 436 VPIDRDTG---NSKGIAYLEFSEGKEKALELNGSDMGGGFYLV 475
>TAIR9_protein||AT5G53700.1 | Symbols: | INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: nucleic acid binding / nucleotide binding
(TAIR:AT5G03480.1); Has 74 Blast hits to 54 proteins in 11 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 68; Viruses
- 0; Other Eukaryotes - 6 (source: NCBI BLink). |
chr5:21801221-21802546 FORWARD
Length = 252
Score = 58 bits (138), Expect = 9e-009
Identities = 32/81 (39%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Frame = +3
Query: 162 ISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVILF----GDG 329
ISV GY+ ++ E +K L F+SCG + + VP+ D + + L I+F G+
Sbjct: 23 ISVEGYDTSVHEFPLKLALAKHFASCGKIVDIDVPR--DFKKRILKSPLFIIFHAKEGES 80
Query: 330 AEEKALQLNGTNVGGWNALVK 392
+KAL+L+GT+VGGWN +VK
Sbjct: 81 PVDKALELSGTDVGGWNVVVK 101
>TAIR9_protein||AT5G05430.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: stem, leaf; EXPRESSED DURING:
LP.04 four leaves visible; BEST Arabidopsis thaliana protein match is:
RNA recognition motif (RRM)-containing protein (TAIR:AT3G09160.1); Has
23 Blast hits to 21 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr5:1605275-1606703 REVERSE
Length = 159
Score = 49 bits (115), Expect = 4e-006
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +3
Query: 138 ISGKPRALISVAGYNPNLPEDDIKKELIDIFSSCGDVTRVIVPKDPDHSPNLDRRALVIL 317
+SG I V GY+ LP DD+ L + FSSCG++ + +P D + + R +L
Sbjct: 17 VSGNDVGRIKVTGYDTGLPLDDLYTALAEHFSSCGEIWEIYIPLKFDETNTILNRFWWLL 76
Query: 318 FGDGAEEKALQLNGTNVGGWNALVK 392
+ Q+ NVGGWN V+
Sbjct: 77 PPPFLSNSSAQV---NVGGWNVSVE 98
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,534,244,245
Number of Sequences: 33410
Number of Extensions: 22534244245
Number of Successful Extensions: 707664446
Number of sequences better than 0.0: 0
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