BLASTX 7.6.2
Query= UN47252 /QuerySize=966
(965 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G30600.1 | Symbols: | signal recognition part... 475 2e-134
TAIR9_protein||AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | ATHSR... 126 2e-029
TAIR9_protein||AT1G48900.1 | Symbols: | signal recognition part... 126 4e-029
TAIR9_protein||AT1G48900.2 | Symbols: | signal recognition part... 126 4e-029
TAIR9_protein||AT2G45770.1 | Symbols: CPFTSY, FRD4 | CPFTSY; 7S ... 112 4e-025
TAIR9_protein||AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54C... 97 1e-020
TAIR9_protein||AT5G49500.1 | Symbols: | signal recognition part... 85 5e-017
>TAIR9_protein||AT4G30600.1 | Symbols: | signal recognition particle receptor
alpha subunit family protein | chr4:14938142-14940600 REVERSE
Length = 635
Score = 475 bits (1221), Expect = 2e-134
Identities = 243/255 (95%), Positives = 251/255 (98%)
Frame = +2
Query: 2 EGKKLASFTRISSTVQEAMEEALIRILTPRRSIDIMRDVHAAKEQRRPYVVVFVGVNGVG 181
EGKKL+SFTRISSTVQ AME+AL+RILTPRRSIDI+RDVHAAKEQR+PYVVVFVGVNGVG
Sbjct: 381 EGKKLSSFTRISSTVQAAMEDALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVG 440
Query: 182 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAK 361
KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAK
Sbjct: 441 KSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAK 500
Query: 362 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINLNKPDLVLFVGEALVGNDAVDQL 541
EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINLN+PDLVLFVGEALVGNDAVDQL
Sbjct: 501 EAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINLNQPDLVLFVGEALVGNDAVDQL 560
Query: 542 SKFNQKLSDLSTSGSTRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDL 721
SKFNQKLSDLSTSG+ RLIDGILLTKFDTIDDKVGAALSMVYISG+PVMFVGCGQSYTDL
Sbjct: 561 SKFNQKLSDLSTSGNPRLIDGILLTKFDTIDDKVGAALSMVYISGSPVMFVGCGQSYTDL 620
Query: 722 KKLNVKAIVKTLFK* 766
KKLNVKAIVKTL K*
Sbjct: 621 KKLNVKAIVKTLLK* 635
>TAIR9_protein||AT1G15310.1 | Symbols: ATHSRP54A, SRP54-1 | ATHSRP54A
(ARABIDOPSIS THALIANA SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S
RNA binding / GTP binding / mRNA binding / nucleoside-triphosphatase/
nucleotide binding | chr1:5269173-5271947 REVERSE
Length = 480
Score = 126 bits (316), Expect = 2e-029
Identities = 72/238 (30%), Positives = 126/238 (52%), Gaps = 18/238 (7%)
Frame = +2
Query: 44 VQEAMEEALIRILTPRRSIDIMRDVHAAKEQRRPYVVVFVGVNGVGKSTNLAKVAYWLQQ 223
+++A+ + L R+L P + A ++ +P VV+FVG+ G GK+T K AY+ Q+
Sbjct: 75 IEQAIFKELCRMLDPGKPA-------FAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQK 127
Query: 224 HKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVV 403
+ DTFR+GA +QL+ +A + +IP + E DP +A E + + D++
Sbjct: 128 KGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLI 187
Query: 404 LVDTAGRMQDNEPLMRALSKLINLNKPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSG 583
+VDT+GR + L + ++ +PDLV+FV ++ +G A +Q F + +S
Sbjct: 188 IVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVS------ 241
Query: 584 STRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKAIVKTL 757
+ +++TK D K G ALS V + +PV+F+G G+ + + +VK V L
Sbjct: 242 ----VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
>TAIR9_protein||AT1G48900.1 | Symbols: | signal recognition particle 54 kDa
protein 3 / SRP54 (SRP-54C) | chr1:18084972-18087743 REVERSE
Length = 496
Score = 126 bits (314), Expect = 4e-029
Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 18/238 (7%)
Frame = +2
Query: 44 VQEAMEEALIRILTPRRSIDIMRDVHAAKEQRRPYVVVFVGVNGVGKSTNLAKVAYWLQQ 223
+++A+ L ++L P + A ++ + VV+FVG+ G GK+T K AY+ Q+
Sbjct: 75 IEQAIFSELCKMLDPGKPA-------FAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQK 127
Query: 224 HKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVV 403
+ DTFR+GA +QL+ +A + +IP + E DP +A E + + D++
Sbjct: 128 KGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLI 187
Query: 404 LVDTAGRMQDNEPLMRALSKLINLNKPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSG 583
+VDT+GR + L + ++ KPDLV+FV ++ +G A DQ F Q ++
Sbjct: 188 IVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVA------ 241
Query: 584 STRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKAIVKTL 757
+ +++TK D K G ALS V + +PV+F+G G+ + + +VK V L
Sbjct: 242 ----VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
>TAIR9_protein||AT1G48900.2 | Symbols: | signal recognition particle 54 kDa
protein 3 / SRP54 (SRP-54C) | chr1:18085031-18087743 REVERSE
Length = 432
Score = 126 bits (314), Expect = 4e-029
Identities = 72/238 (30%), Positives = 124/238 (52%), Gaps = 18/238 (7%)
Frame = +2
Query: 44 VQEAMEEALIRILTPRRSIDIMRDVHAAKEQRRPYVVVFVGVNGVGKSTNLAKVAYWLQQ 223
+++A+ L ++L P + A ++ + VV+FVG+ G GK+T K AY+ Q+
Sbjct: 75 IEQAIFSELCKMLDPGKPA-------FAPKKAKASVVMFVGLQGAGKTTTCTKYAYYHQK 127
Query: 224 HKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSDVV 403
+ DTFR+GA +QL+ +A + +IP + E DP +A E + + D++
Sbjct: 128 KGYKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDTFKKENCDLI 187
Query: 404 LVDTAGRMQDNEPLMRALSKLINLNKPDLVLFVGEALVGNDAVDQLSKFNQKLSDLSTSG 583
+VDT+GR + L + ++ KPDLV+FV ++ +G A DQ F Q ++
Sbjct: 188 IVDTSGRHKQEASLFEEMRQVAEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVA------ 241
Query: 584 STRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKAIVKTL 757
+ +++TK D K G ALS V + +PV+F+G G+ + + +VK V L
Sbjct: 242 ----VGAVIITKMDG-HAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRL 294
>TAIR9_protein||AT2G45770.1 | Symbols: CPFTSY, FRD4 | CPFTSY; 7S RNA binding /
GTP binding / nucleoside-triphosphatase/ nucleotide binding |
chr2:18851248-18853402 FORWARD
Length = 367
Score = 112 bits (279), Expect = 4e-025
Identities = 78/245 (31%), Positives = 130/245 (53%), Gaps = 25/245 (10%)
Frame = +2
Query: 38 STVQEAMEEALIRILTPRRSIDIMRDVHAAKEQRRPYVVVFVGVNGVGKSTNLAKVAYWL 217
S +++A++E+++ +L + S R+P V++ VGVNG GK+T+L K+A+ L
Sbjct: 134 SEIKDALKESVLEMLAKKNS-----KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 188
Query: 218 QQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPI-FEKGYEKDPAVVAKEAIQEATRNGS 394
+ V+MAA DTFR+ A +QL A R I +G + A V +A++ G
Sbjct: 189 KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGY 248
Query: 395 DVVLVDTAGRMQDNEPLM-------RALSKLINLNKPDLVLFVGEALVGNDAVDQLSKFN 553
DVVL DT+GR+ N LM +A+ K+++ P+ +L V + G + + Q +FN
Sbjct: 249 DVVLCDTSGRLHTNYSLMEELIACKKAVGKIVS-GAPNEILLVLDGNTGLNMLPQAREFN 307
Query: 554 QKLSDLSTSGSTRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLN 733
+ + I G++LTK D + G +S+V G PV F+G G++ DL+ +
Sbjct: 308 EVVG----------ITGLILTKLDG-SARGGCVVSVVEELGIPVKFIGVGEAVEDLQPFD 356
Query: 734 VKAIV 748
+A V
Sbjct: 357 PEAFV 361
>TAIR9_protein||AT5G03940.1 | Symbols: FFC, 54CP, CPSRP54, SRP54CP | CPSRP54
(CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT); 7S RNA
binding / GTP binding / mRNA binding / signal sequence binding |
chr5:1060265-1063257 REVERSE
Length = 565
Score = 97 bits (240), Expect = 1e-020
Identities = 49/140 (35%), Positives = 86/140 (61%)
Frame = +2
Query: 143 PYVVVFVGVNGVGKSTNLAKVAYWLQQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIF 322
P V++ G+ GVGK+T AK+A +L++ S M+ A D +R A++QL ++ +P++
Sbjct: 176 PTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAGDVYRPAAIDQLVILGEQVGVPVY 235
Query: 323 EKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINLNKPDLVLFV 502
G + PA +AK+ ++EA +N DVV++DTAGR+Q ++ +M L + P VL V
Sbjct: 236 TAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQIDKGMMDELKDVKKFLNPTEVLLV 295
Query: 503 GEALVGNDAVDQLSKFNQKL 562
+A+ G +A ++ FN ++
Sbjct: 296 VDAMTGQEAAALVTTFNVEI 315
>TAIR9_protein||AT5G49500.1 | Symbols: | signal recognition particle 54 kDa
protein 2 / SRP54 (SRP-54B) | chr5:20077556-20080206 REVERSE
Length = 498
Score = 85 bits (209), Expect = 5e-017
Identities = 48/176 (27%), Positives = 92/176 (52%), Gaps = 9/176 (5%)
Frame = +2
Query: 44 VQEAMEEALIRILTPRRSIDIMRDVHAAKEQRRPYVVVFVGVNG--VGKSTNLAKVAYWL 217
+++A+ L ++L P +S A ++ +P VV+FVG+ G + K + + +
Sbjct: 75 IEQAIFSELCKMLDPGKSA-------FAPKKAKPSVVMFVGLQGEVLEKPQLVPSMLIII 127
Query: 218 QQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVVAKEAIQEATRNGSD 397
++ + DTFR+GA +QL+ +A + +IP + DP +A E + + D
Sbjct: 128 RRKGYKPALVCADTFRAGAFDQLKQNATKSKIPYYGSYTGSDPVKIAVEGVDRFKKENCD 187
Query: 398 VVLVDTAGRMQDNEPLMRALSKLINLNKPDLVLFVGEALVGNDAVDQLSKFNQKLS 565
+++VDT+GR + L + ++ KPDLV+FV ++ +G A +Q F Q ++
Sbjct: 188 LIIVDTSGRHKQQASLFEEMRQISEATKPDLVIFVMDSSIGQTAFEQARAFKQTVA 243
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,534,244,245
Number of Sequences: 33410
Number of Extensions: 22534244245
Number of Successful Extensions: 707664446
Number of sequences better than 0.0: 0
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