BLASTX 7.6.2
Query= UN47259 /QuerySize=641
(640 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A... 228 4e-060
TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2... 135 3e-032
TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A... 123 1e-028
TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDI... 110 8e-025
TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDI... 97 7e-021
TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDI... 67 6e-012
TAIR9_protein||AT3G19350.1 | Symbols: MPC | MPC (MATERNALLY EXPR... 67 8e-012
>TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A) BINDING
PROTEIN 4); RNA binding / translation initiation factor |
chr2:9943209-9946041 FORWARD
Length = 663
Score = 228 bits (579), Expect = 4e-060
Identities = 119/158 (75%), Positives = 132/158 (83%), Gaps = 9/158 (5%)
Frame = -3
Query: 635 QQPMPYMHPQMMAGGRGHRYPR-GRNMPDGPMPGGRVPFPYDINGVPI---MPAGALASS 468
QQPMPYM PQMM GRG+RYP GRNMPDGPMPGG VP YD+N +P M AG LA+S
Sbjct: 506 QQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSAGQLATS 565
Query: 467 LAQASPAHQRTILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSE 288
LA A+PA QRT+LGE+LYPLV++IE E+AAKVTGMLLEMDQTEVLHL+ESPEALNAKVSE
Sbjct: 566 LANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVSE 625
Query: 287 ALDVLRNVNQPSE-----GKSGSPSDMMASLSINDHL* 189
ALDVLRNVNQPS KSGSPSD++ASLSINDHL*
Sbjct: 626 ALDVLRNVNQPSSQGSEGNKSGSPSDLLASLSINDHL* 663
>TAIR9_protein||AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | PAB2 (POLY(A)
BINDING 2); RNA binding / translation initiation factor |
chr4:16336732-16339892 FORWARD
Length = 630
Score = 135 bits (338), Expect = 3e-032
Identities = 75/124 (60%), Positives = 89/124 (71%), Gaps = 7/124 (5%)
Frame = -3
Query: 635 QQPMPYMHPQMMAGGRGHRYPRGRNMPDGPMPGGRVPFPYDINGVPIMPAGALASSLAQA 456
QQ P M QM GR RYP+GR G VP PYD+ + GALAS+L+ A
Sbjct: 498 QQQNPMMQQQMHPRGRMFRYPQGRG------GSGDVP-PYDMGNNMPLTIGALASNLSNA 550
Query: 455 SPAHQRTILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDV 276
+P QRT+LGE LYPLV ++E E+AAKVTGMLLEMDQTEVLHL+ESPEAL AKV+EA+DV
Sbjct: 551 TPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDV 610
Query: 275 LRNV 264
LR+V
Sbjct: 611 LRSV 614
>TAIR9_protein||AT1G49760.1 | Symbols: PAB8, PABP8 | PAB8 (POLY(A) BINDING
PROTEIN 8); RNA binding / translation initiation factor |
chr1:18416740-18419753 FORWARD
Length = 672
Score = 123 bits (307), Expect = 1e-028
Identities = 64/101 (63%), Positives = 82/101 (81%), Gaps = 3/101 (2%)
Frame = -3
Query: 494 MPAGALASSLAQASPAHQRTILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESP 315
+P ALA+ LA A+P QRT+LGE LYPLV ++E E+AAKVTGMLLEMDQTEVLHL+ESP
Sbjct: 572 VPIVALATRLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESP 631
Query: 314 EALNAKVSEALDVLRNVNQPSEGKSGSPSDMMASLSINDHL 192
EAL AKV+EA+DVLR+V Q ++G +D +ASLS+ D++
Sbjct: 632 EALKAKVTEAMDVLRSVAQQ---QAGGAADQLASLSLGDNI 669
>TAIR9_protein||AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3);
RNA binding / translation initiation factor | chr1:8055599-8058799
FORWARD
Length = 661
Score = 110 bits (274), Expect = 8e-025
Identities = 66/136 (48%), Positives = 84/136 (61%), Gaps = 8/136 (5%)
Frame = -3
Query: 629 PMPYMHPQMMAGGRGHRYPRGRNMPDGPMPGGRVPFPYDINGV-----PIMPAGALASSL 465
P P M + M G R ++P G +P +P P D + + P++P L SSL
Sbjct: 523 PSPGM--RYMNGASNGRNGMDSSVPQGILP-PIIPLPIDASSISHQKAPLLPISKLTSSL 579
Query: 464 AQASPAHQRTILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEA 285
A ASPA + +LGE LYPLV + E + AKVTGMLLEMDQ E+LHL+ESPEAL +KVSEA
Sbjct: 580 ASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEA 639
Query: 284 LDVLRNVNQPSEGKSG 237
LDVLR P++ G
Sbjct: 640 LDVLRLSVDPTDHDLG 655
>TAIR9_protein||AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN 5);
RNA binding / poly(A) binding / translation initiation factor |
chr1:26990777-26993447 REVERSE
Length = 669
Score = 97 bits (240), Expect = 7e-021
Identities = 52/76 (68%), Positives = 58/76 (76%)
Frame = -3
Query: 479 LASSLAQASPAHQRTILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNA 300
LAS LA ASP +LG+ LYPLV + E NAAKVTGMLLEMDQ E+LHL+ESPEAL A
Sbjct: 578 LASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLESPEALKA 637
Query: 299 KVSEALDVLRNVNQPS 252
KVSEALDVLR P+
Sbjct: 638 KVSEALDVLRRSADPA 653
>TAIR9_protein||AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7);
RNA binding / translation initiation factor | chr2:15361476-15364398
REVERSE
Length = 610
Score = 67 bits (163), Expect = 6e-012
Identities = 37/81 (45%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Frame = -3
Query: 434 ILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSEALDVLR----N 267
+LGE L+PLV K+E + A K+TGMLLEMD++E+L L++SPE L +V EA +VL+ N
Sbjct: 528 LLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSSKTN 587
Query: 266 VNQPSEGKSGSPSDMMASLSI 204
+ P+ +S + +A +SI
Sbjct: 588 LTAPNTHRSDYLASGIAGVSI 608
>TAIR9_protein||AT3G19350.1 | Symbols: MPC | MPC (MATERNALLY EXPRESSED PAB
C-TERMINAL); poly(A) binding | chr3:6705526-6705929 FORWARD
Length = 104
Score = 67 bits (162), Expect = 8e-012
Identities = 31/65 (47%), Positives = 47/65 (72%)
Frame = -3
Query: 467 LAQASPAHQRTILGETLYPLVNKIEHENAAKVTGMLLEMDQTEVLHLIESPEALNAKVSE 288
LA P QR ++GETL+ +V ++E + A K+TGM+LE+DQ +VLHL+ +P+A V E
Sbjct: 23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKE 82
Query: 287 ALDVL 273
A++VL
Sbjct: 83 AMEVL 87
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,628,668,842
Number of Sequences: 33410
Number of Extensions: 22628668842
Number of Successful Extensions: 713028804
Number of sequences better than 0.0: 0
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