BLASTX 7.6.2
Query= UN47274 /QuerySize=939
(938 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G44065.1 | Symbols: | ribosomal protein L2 fa... 393 1e-109
TAIR9_protein||AT2G44065.2 | Symbols: | ribosomal protein L2 fa... 393 1e-109
TAIR9_protein||ATCG00830.1 | Symbols: RPL2.1 | encodes a chlorop... 127 1e-029
TAIR9_protein||ATCG01310.1 | Symbols: RPL2.2 | encodes a chlorop... 127 1e-029
TAIR9_protein||AT3G51190.1 | Symbols: | structural constituent ... 88 6e-018
TAIR9_protein||AT2G18020.1 | Symbols: EMB2296 | EMB2296 (embryo ... 82 4e-016
TAIR9_protein||AT4G36130.1 | Symbols: | 60S ribosomal protein L... 79 4e-015
>TAIR9_protein||AT2G44065.1 | Symbols: | ribosomal protein L2 family protein |
chr2:18228860-18230368 FORWARD
Length = 215
Score = 393 bits (1008), Expect = 1e-109
Identities = 191/215 (88%), Positives = 201/215 (93%), Gaps = 1/215 (0%)
Frame = +1
Query: 145 MSGLVALCRARTS-SSSLLNSLVRPVFRTLSTGFGDVQNKTLVAEMEEKMLHMDINSMIG 321
MSGLVALCRAR S SSSL NS++RP FR STGF D QNK+LVA+M+E+MLHMDINSMIG
Sbjct: 1 MSGLVALCRARASASSSLFNSVIRPAFRNFSTGFADTQNKSLVAQMKEEMLHMDINSMIG 60
Query: 322 SSMPLGMMRIGTIIHNIEMNPGQGAKLVRAAGTNAKILKEPASGRCLIKLPSGDTRWINA 501
SSMPLGMMRIGTIIHNIEMNPGQGAK+VRAAGTNAKILKEPA G+CLIKLPSGDT+WINA
Sbjct: 61 SSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINA 120
Query: 502 RCRATIGTVSNPSHGVKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRG 681
+CRATIGTVSNPSHG KKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRG
Sbjct: 121 KCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRG 180
Query: 682 RTSVSPWGKPCKGGYKSASVKKKKKRLAAREAKM* 786
RTSVSPWGKPCKGGYKSASVKKKKKRLA AKM*
Sbjct: 181 RTSVSPWGKPCKGGYKSASVKKKKKRLAEAAAKM* 215
>TAIR9_protein||AT2G44065.2 | Symbols: | ribosomal protein L2 family protein |
chr2:18228860-18230368 FORWARD
Length = 215
Score = 393 bits (1008), Expect = 1e-109
Identities = 191/215 (88%), Positives = 201/215 (93%), Gaps = 1/215 (0%)
Frame = +1
Query: 145 MSGLVALCRARTS-SSSLLNSLVRPVFRTLSTGFGDVQNKTLVAEMEEKMLHMDINSMIG 321
MSGLVALCRAR S SSSL NS++RP FR STGF D QNK+LVA+M+E+MLHMDINSMIG
Sbjct: 1 MSGLVALCRARASASSSLFNSVIRPAFRNFSTGFADTQNKSLVAQMKEEMLHMDINSMIG 60
Query: 322 SSMPLGMMRIGTIIHNIEMNPGQGAKLVRAAGTNAKILKEPASGRCLIKLPSGDTRWINA 501
SSMPLGMMRIGTIIHNIEMNPGQGAK+VRAAGTNAKILKEPA G+CLIKLPSGDT+WINA
Sbjct: 61 SSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINA 120
Query: 502 RCRATIGTVSNPSHGVKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRG 681
+CRATIGTVSNPSHG KKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRG
Sbjct: 121 KCRATIGTVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRG 180
Query: 682 RTSVSPWGKPCKGGYKSASVKKKKKRLAAREAKM* 786
RTSVSPWGKPCKGGYKSASVKKKKKRLA AKM*
Sbjct: 181 RTSVSPWGKPCKGGYKSASVKKKKKRLAEAAAKM* 215
>TAIR9_protein||ATCG00830.1 | Symbols: RPL2.1 | encodes a chloroplast ribosomal
protein L2, a constituent of the large subunit of the ribosomal complex
| chrC:84337-85843 REVERSE
Length = 275
Score = 127 bits (318), Expect = 1e-029
Identities = 68/147 (46%), Positives = 89/147 (60%), Gaps = 8/147 (5%)
Frame = +1
Query: 316 IGSSMPLGMMRIGTIIHNIEMNPGQGAKLVRAAGTNAKILKEPASGRCLIKLPSGDTRWI 495
+G+++PL M +GT IHNIE+ G+G +L RAAG AK++ + L KLPSG+ R I
Sbjct: 124 MGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLI 182
Query: 496 NARCRATIGTVSNPSHGVKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGS 675
+ C AT+G V N K L +AG WLG RP VRGV MNP DHPHGGGEG++
Sbjct: 183 SKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRK 242
Query: 676 RGRTSVSPWGKPCKGGYKSASVKKKKK 756
+ V+PWG P G +K+KK
Sbjct: 243 K---PVTPWGYPALG----RRTRKRKK 262
>TAIR9_protein||ATCG01310.1 | Symbols: RPL2.2 | encodes a chloroplast ribosomal
protein L2, a constituent of the large subunit of the ribosomal complex
| chrC:152806-154312 FORWARD
Length = 275
Score = 127 bits (318), Expect = 1e-029
Identities = 68/147 (46%), Positives = 89/147 (60%), Gaps = 8/147 (5%)
Frame = +1
Query: 316 IGSSMPLGMMRIGTIIHNIEMNPGQGAKLVRAAGTNAKILKEPASGRCLIKLPSGDTRWI 495
+G+++PL M +GT IHNIE+ G+G +L RAAG AK++ + L KLPSG+ R I
Sbjct: 124 MGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLI 182
Query: 496 NARCRATIGTVSNPSHGVKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGS 675
+ C AT+G V N K L +AG WLG RP VRGV MNP DHPHGGGEG++
Sbjct: 183 SKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRK 242
Query: 676 RGRTSVSPWGKPCKGGYKSASVKKKKK 756
+ V+PWG P G +K+KK
Sbjct: 243 K---PVTPWGYPALG----RRTRKRKK 262
>TAIR9_protein||AT3G51190.1 | Symbols: | structural constituent of ribosome |
chr3:19016606-19017547 REVERSE
Length = 261
Score = 88 bits (217), Expect = 6e-018
Identities = 54/140 (38%), Positives = 75/140 (53%), Gaps = 6/140 (4%)
Frame = +1
Query: 307 NSMIGSSMPLGMMRIGTIIHNIEMNPGQGAKLVRAAGTNAKIL-KEPASGRCLIKLPSGD 483
N M+G+ +PLG + G +I N+E++ G L RA+G A ++ P S +KLPSG
Sbjct: 96 NLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGS 155
Query: 484 TRWINARCRATIGTVSNPSHGVKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 648
+ + + CRA IG V+ K L KAG + ++ R P VRGVAMNP +HPHGGG
Sbjct: 156 KKILPSACRAMIGQVAGGGRTEKPLLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGG 215
Query: 649 EGKSKSSGSRGRTSVSPWGK 708
+ S R S K
Sbjct: 216 NHQHIGHASTVRRDKSAGAK 235
>TAIR9_protein||AT2G18020.1 | Symbols: EMB2296 | EMB2296 (embryo defective
2296); structural constituent of ribosome | chr2:7837151-7838160
FORWARD
Length = 259
Score = 82 bits (201), Expect = 4e-016
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Frame = +1
Query: 313 MIGSSMPLGMMRIGTIIHNIEMNPGQGAKLVRAAGTNAKIL-KEPASGRCLIKLPSGDTR 489
++G+ +PL + G ++ N+E + G L RA+G A ++ P S IKLPSG +
Sbjct: 97 VVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNPDSDTTRIKLPSGSKK 156
Query: 490 WINARCRATIGTVSNPSHGVKKLYKAG---------QSRWLGIRPKVRGVAMNPCDHPHG 642
+ + CRA IG V+ K + KAG ++ W PKVRGVAMNP +HPHG
Sbjct: 157 IVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSW----PKVRGVAMNPVEHPHG 212
Query: 643 GGEGKSKSSGSRGRTSVSPWGK 708
GG + S R P K
Sbjct: 213 GGNHQHIGHASTVRRDAPPGQK 234
>TAIR9_protein||AT4G36130.1 | Symbols: | 60S ribosomal protein L8 (RPL8C) |
chr4:17097613-17098656 FORWARD
Length = 259
Score = 79 bits (193), Expect = 4e-015
Identities = 49/138 (35%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Frame = +1
Query: 313 MIGSSMPLGMMRIGTIIHNIEMNPGQGAKLVRAAGTNAKIL-KEPASGRCLIKLPSGDTR 489
++G+ +PL + G +I N+E + G RA+G A ++ P + IKLPSG +
Sbjct: 97 VVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKK 156
Query: 490 WINARCRATIGTVSNPSHGVKKLYKAGQSRW-----LGIRPKVRGVAMNPCDHPHGGGEG 654
+ + CRA IG V+ K + KAG + PKVRGVAMNP +HPHGGG
Sbjct: 157 IVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNH 216
Query: 655 KSKSSGSRGRTSVSPWGK 708
+ S R P K
Sbjct: 217 QHIGHASTVRRDAPPGKK 234
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,628,668,842
Number of Sequences: 33410
Number of Extensions: 22628668842
Number of Successful Extensions: 713028804
Number of sequences better than 0.0: 0
|
