BLASTX 7.6.2
Query= UN47278 /QuerySize=1013
(1012 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G51120.1 | Symbols: PABN1, ATPABN1 | PABN1 (PO... 413 1e-115
TAIR9_protein||AT5G65260.1 | Symbols: | polyadenylate-binding p... 278 6e-075
TAIR9_protein||AT5G10350.1 | Symbols: | polyadenylate-binding p... 262 3e-070
TAIR9_protein||AT5G10350.2 | Symbols: | polyadenylate-binding p... 236 2e-062
TAIR9_protein||AT2G16940.1 | Symbols: | RNA recognition motif (... 55 5e-008
TAIR9_protein||AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotei... 54 1e-007
TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA b... 53 2e-007
TAIR9_protein||AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine... 49 3e-006
>TAIR9_protein||AT5G51120.1 | Symbols: PABN1, ATPABN1 | PABN1
(POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding /
protein binding | chr5:20779760-20781241 FORWARD
Length = 228
Score = 413 bits (1060), Expect = 1e-115
Identities = 205/230 (89%), Positives = 215/230 (93%), Gaps = 4/230 (1%)
Frame = +1
Query: 64 MTLNDEQEHEVYGGEIP-EEEGEMETDEYEEHVGEEEGAAAGGDEELEPGSSSKDLEDMK 240
M ++DEQEHEVYGGEIP EEEGEM+T+EYEEH GEE AA GDEELEPGSSS+DLEDMK
Sbjct: 1 MPVHDEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEE--GAAAGDEELEPGSSSRDLEDMK 58
Query: 241 KRINEIEEEAGALREMQAKAEKEMGADQDPSGAISSAEKEEVDSRSIYVGNVDYACTPEE 420
KRI EIEEEAGALREMQAKAEK+MGA QDPSG +S+AEKEEVDSRSIYVGNVDYACTPEE
Sbjct: 59 KRIKEIEEEAGALREMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACTPEE 118
Query: 421 VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEEDAVQNSLILNESELHGRQIKVSAKR 600
VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVE +AVQNSLILNESELHGRQIKVSAKR
Sbjct: 119 VQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKR 178
Query: 601 TNVPGMRQFRGR-RPFRPMRGFMPGIPFYAPYGYGRVPRFRRPMRYRPY* 747
TNVPGMRQFRGR RPFRPMRGFMPG+PFY PY YGRVPRFRRPMRYRPY*
Sbjct: 179 TNVPGMRQFRGRGRPFRPMRGFMPGVPFYPPYAYGRVPRFRRPMRYRPY* 228
>TAIR9_protein||AT5G65260.1 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:26080501-26082984 REVERSE
Length = 221
Score = 278 bits (709), Expect = 6e-075
Identities = 146/224 (65%), Positives = 172/224 (76%), Gaps = 15/224 (6%)
Frame = +1
Query: 88 HEVYGGEIPEEEGEMETDEYEEHVGEEEGAAAGGDEELEPGSSSKDLEDMKKRINEIEEE 267
HEVYGGEIP + GEM+ D E + + AA D+ + K+L++MKKR+ E+E+E
Sbjct: 6 HEVYGGEIP-DVGEMDGD--MEALNPDLDMAAADDDAV------KELDEMKKRLKEMEDE 56
Query: 268 AGALREMQAKAEKEMGADQDPSGAISSAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCG 447
A ALREMQAK EKEMGA S A + A KEEVD+RS++VGNVDYACTPEEVQQHFQ+CG
Sbjct: 57 AAALREMQAKVEKEMGAQDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCG 116
Query: 448 TVNRVTILTDKFGQPKGFAYVEFVEEDAVQNSLILNESELHGRQIKVSAKRTNVPGMRQF 627
TV+RVTILTDKFGQPKGFAYVEFVE +AVQ +L LNESELHGRQ+KV KRTNVPG++QF
Sbjct: 117 TVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQF 176
Query: 628 RGRRPFRPMRGFMPGIPF-----YAPYGYGRVPRFRRPMRYRPY 744
RGRR F P G+ PF Y+PYGYG+ PRFRRPMRY PY
Sbjct: 177 RGRR-FNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219
>TAIR9_protein||AT5G10350.1 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:3255674-3257746 REVERSE
Length = 218
Score = 262 bits (668), Expect = 3e-070
Identities = 138/217 (63%), Positives = 166/217 (76%), Gaps = 13/217 (5%)
Frame = +1
Query: 130 METDEYEEHVGE--EEGAAAGGDEELEPGSSSKD----LEDMKKRINEIEEEAGALREMQ 291
ME +E+E + GE E G D +++ ++ +D L +MK+R+ E+EEEA ALREMQ
Sbjct: 1 MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60
Query: 292 AKAEKEMGADQDPSGAISSAE-KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTI 468
AK EKEMGA QDP+ ++ E KEEVD+RS+YVGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61 AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120
Query: 469 LTDKFGQPKGFAYVEFVEEDAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRRPFR 648
L DKFGQPKGFAYVEFVE +AVQ +L LNESELHGRQ+KVS KRTNVPGM+Q+ R F
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGR-FN 179
Query: 649 PMRGF---MPGIP--FYAPYGYGRVPRFRRPMRYRPY 744
P G+ P +P FY+PYGYG+ PRFRRPMRY PY
Sbjct: 180 PSMGYRFRRPFVPPYFYSPYGYGKAPRFRRPMRYMPY 216
>TAIR9_protein||AT5G10350.2 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:3255808-3257746 REVERSE
Length = 203
Score = 236 bits (601), Expect = 2e-062
Identities = 127/203 (62%), Positives = 154/203 (75%), Gaps = 13/203 (6%)
Frame = +1
Query: 130 METDEYEEHVGE--EEGAAAGGDEELEPGSSSKD----LEDMKKRINEIEEEAGALREMQ 291
ME +E+E + GE E G D +++ ++ +D L +MK+R+ E+EEEA ALREMQ
Sbjct: 1 MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60
Query: 292 AKAEKEMGADQDPSGAISSAE-KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTI 468
AK EKEMGA QDP+ ++ E KEEVD+RS+YVGNVDYACTPEEVQ HFQ+CGTVNRVTI
Sbjct: 61 AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTI 120
Query: 469 LTDKFGQPKGFAYVEFVEEDAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRRPFR 648
L DKFGQPKGFAYVEFVE +AVQ +L LNESELHGRQ+KVS KRTNVPGM+Q+ R F
Sbjct: 121 LMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGR-FN 179
Query: 649 PMRGF---MPGIP--FYAPYGYG 702
P G+ P +P FY+PYGYG
Sbjct: 180 PSMGYRFRRPFVPPYFYSPYGYG 202
>TAIR9_protein||AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:7342869-7347052 REVERSE
Length = 562
Score = 55 bits (132), Expect = 5e-008
Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
Frame = +1
Query: 370 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEEDAVQNSLI 549
+R +YVGN+ + +++++ F+S G+V V + D+ G KGF +V+F + +N+L
Sbjct: 284 ARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN 343
Query: 550 LN-ESELHGRQIKVSA--KRTNVP 612
LN + E+ GR IKVSA +T VP
Sbjct: 344 LNGQLEIAGRAIKVSAVTDQTEVP 367
>TAIR9_protein||AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative | chr2:14898341-14899590
FORWARD
Length = 309
Score = 54 bits (129), Expect = 1e-007
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Frame = +1
Query: 298 AEKEMGADQDPSGAISSAEKEEVD-SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILT 474
AEKE AD++ S + E + + R ++V N+ ++ + ++ + F CGTVN V I+
Sbjct: 69 AEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIR 128
Query: 475 DKFGQPKGFAYVEFVEEDAVQNSL-ILNESELHGRQIKVSAKR 600
K G+ +GFA+V + Q ++ + ++ GR I VS R
Sbjct: 129 QKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFAR 171
>TAIR9_protein||AT3G52380.1 | Symbols: CP33, PDE322 | CP33; RNA binding |
chr3:19421619-19422855 FORWARD
Length = 330
Score = 53 bits (126), Expect = 2e-007
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 8/118 (6%)
Frame = +1
Query: 262 EEAGALREMQAKAEKEMGADQDPSGAISSAEKEEVDSRS------IYVGNVDYACTPEEV 423
E + A E+QA E+E +++ E+E+ +++ +YVGN+ Y T E+
Sbjct: 73 EASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGRLYVGNLPYTITSSEL 132
Query: 424 QQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVE-EDAVQNSLILNESELHGRQIKVS 591
Q F GTV V I+ DK + +GF +V E+A + + N S++ GR +KV+
Sbjct: 133 SQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVN 190
>TAIR9_protein||AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich
RNA-binding protein 5); ATP binding / RNA binding |
chr1:27915346-27916857 FORWARD
Length = 290
Score = 49 bits (116), Expect = 3e-006
Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Frame = +1
Query: 364 VDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEEDAVQN 540
+ S I+VG + Y+ +++ F G V I+ D+ G+ +GFA+V F + N
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 541 SLILNESELHGRQIKV--SAKRTNVPGMRQFRG 633
++ L+ +LHGR+I+V + +R + G R F G
Sbjct: 91 AMQLDGQDLHGRRIRVNYATERGSGFGGRGFGG 123
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,628,668,842
Number of Sequences: 33410
Number of Extensions: 22628668842
Number of Successful Extensions: 713028804
Number of sequences better than 0.0: 0
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