BLASTX 7.6.2
Query= UN47440 /QuerySize=1030
(1029 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G55460.1 | Symbols: SCL30 | SCL30; RNA binding... 185 5e-047
TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA bindi... 94 1e-019
TAIR9_protein||AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33 | SR3... 90 2e-018
TAIR9_protein||AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33 | SR3... 90 2e-018
TAIR9_protein||AT5G18810.1 | Symbols: SCL28 | SCL28; RNA binding... 79 5e-015
TAIR9_protein||AT3G49430.1 | Symbols: SRp34a | SRp34a (Ser/Arg-r... 66 4e-011
TAIR9_protein||AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 62 4e-010
TAIR9_protein||AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 62 4e-010
TAIR9_protein||AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 56 3e-008
TAIR9_protein||AT3G49430.2 | Symbols: SRp34a | SRp34a (Ser/Arg-r... 54 2e-007
TAIR9_protein||AT3G06480.1 | Symbols: | DEAD box RNA helicase, ... 52 5e-007
TAIR9_protein||AT4G02430.2 | Symbols: | pre-mRNA splicing facto... 52 5e-007
TAIR9_protein||AT3G23900.1 | Symbols: | RNA recognition motif (... 49 4e-006
TAIR9_protein||AT3G23900.2 | Symbols: | RNA recognition motif (... 49 4e-006
>TAIR9_protein||AT3G55460.1 | Symbols: SCL30 | SCL30; RNA binding / nucleic acid
binding / nucleotide binding | chr3:20561024-20563502 FORWARD
Length = 263
Score = 185 bits (468), Expect = 5e-047
Identities = 83/88 (94%), Positives = 86/88 (97%), Gaps = 1/88 (1%)
Frame = +3
Query: 48 RRYSPPYYSPPRRGYGGRGRS-PPPPPRRGYGGGGGGGGRKGSSHGSLLVRNIPLDCRPE 224
RRYSPPYYSPPRRGYGGRGRS PPPPPRRGYGGGGGGGGR+GSSHGSLLVRNIPLDCRPE
Sbjct: 2 RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61
Query: 225 ELRVPFERFGPVKDVYIPRDYYSGEPRG 308
ELR PFERFGPV+DVYIPRDYYSG+PRG
Sbjct: 62 ELREPFERFGPVRDVYIPRDYYSGQPRG 89
Score = 167 bits (421), Expect = 2e-041
Identities = 99/156 (63%), Positives = 102/156 (65%), Gaps = 13/156 (8%)
Frame = +1
Query: 280 ETITQGNLGEPQRSMNRRVFGGREITVVVASESRKRPEEMRVKTRTRSREPSGSRGRSHG 459
E + + GE QRSMNRR F GREITVVVASESRKRPEEMRVKTRTRSREPSGSR RSHG
Sbjct: 94 EFVDAYDAGEAQRSMNRRSFAGREITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHG 153
Query: 460 RSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPRRRQEERPRSP------ 621
RSRSRSISRSRSPRRPSDSRSR RSRSYSPAPRRRG R SP
Sbjct: 154 RSRSRSISRSRSPRRPSDSRSRYRSRSYSPAPRRRGGPPRGEEDENYSRRSYSPGYEGAA 213
Query: 622 LRSPPRGEGDAKYSRRSYSPGYEGAATAAEDRDTNG 729
+P R R PGYE AEDR G
Sbjct: 214 AAAPDRDRNGDNEIRE--KPGYE-----AEDRRRGG 242
Score = 145 bits (365), Expect = 5e-035
Identities = 91/159 (57%), Positives = 98/159 (61%), Gaps = 19/159 (11%)
Frame = +1
Query: 394 EMRVKTRTRSRE-PSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSP------A 552
E+ V + SR+ P R ++ RSR S SR RS R SRSR SRS SP
Sbjct: 117 EITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGR---SRSRSISRSRSPRRPSDSR 173
Query: 553 PRRRGADYSASPRRRQEERPRSPLRSPPRGEGDAKYSRRSYSPGYEGAATAAEDRDTNGD 732
R R YS +PRRR PPRGE D YSRRSYSPGYEGAA AA DRD NGD
Sbjct: 174 SRYRSRSYSPAPRRR---------GGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGD 224
Query: 733 NETREKLDYEPEERRRGGREVSRSPSGSRSRSVEASPR* 849
NE REK YE E+RRRGGR VSRSPSGSRSRSVE SPR*
Sbjct: 225 NEIREKPGYEAEDRRRGGRAVSRSPSGSRSRSVEVSPR* 263
>TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA binding / nucleic
acid binding / nucleotide binding | chr3:4429564-4431602 REVERSE
Length = 263
Score = 94 bits (232), Expect = 1e-019
Identities = 48/79 (60%), Positives = 55/79 (69%), Gaps = 8/79 (10%)
Frame = +3
Query: 72 SPPRRGYGGRGRSPPPPPRRGYGGGGGGGGRKGSSHGSLLVRNIPLDCRPEELRVPFERF 251
SPP RGYG RGRSP P G GG R SLLVRN+ DCR E+LR PFE+F
Sbjct: 9 SPP-RGYGRRGRSPSP-------RGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60
Query: 252 GPVKDVYIPRDYYSGEPRG 308
GPVKD+Y+PRDYY+G+PRG
Sbjct: 61 GPVKDIYLPRDYYTGDPRG 79
Score = 81 bits (199), Expect = 8e-016
Identities = 67/179 (37%), Positives = 85/179 (47%), Gaps = 21/179 (11%)
Frame = +1
Query: 307 EPQRSMNRRVFGGREITVVVASESRKRPEEMRVKTRTRSREPSGSRGRSHGRSRSRSISR 486
E + M+ + GRE+TVV A E+RK+P EM RTR R +R + RS R SR
Sbjct: 93 EAKHQMDGYLLLGRELTVVFAEENRKKPTEM----RTRDRGGRSNRFQDRRRSPPR-YSR 147
Query: 487 SRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPRRRQEERPRSPLRSPPRGEGDAKYSR 666
S PRR RSR RSR Y+ P +R S SP+ R+ E+ RS RSPP
Sbjct: 148 SPPPRR--GRRSRSRSRGYNSPPAKRHQSRSVSPQDRRYEKERSYSRSPPHNGSRV---- 201
Query: 667 RSYSPGYEGAATAAEDRDTNGDNETREKLDYEPEERRRGGREVSRSPSGSRSRSVEASP 843
RS SPG + R R+ Y PE+ R S+SP +SRS P
Sbjct: 202 RSGSPG----RVKSHSRSPRRSVSPRKNRSYTPEQAR------SQSPVPRQSRSPTPVP 250
>TAIR9_protein||AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33 | SR33; RNA binding
/ protein binding | chr1:20630676-20632695 FORWARD
Length = 288
Score = 90 bits (222), Expect = 2e-018
Identities = 45/77 (58%), Positives = 52/77 (67%), Gaps = 8/77 (10%)
Frame = +3
Query: 78 PRRGYGGRGRSPPPPPRRGYGGGGGGGGRKGSSHGSLLVRNIPLDCRPEELRVPFERFGP 257
P RGYG RGRSP P G GGR SLLVRN+ DCR E+LR FE+FGP
Sbjct: 10 PPRGYGRRGRSPSP--------RGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGP 61
Query: 258 VKDVYIPRDYYSGEPRG 308
VKD+Y+PRDYY+G+PRG
Sbjct: 62 VKDIYLPRDYYTGDPRG 78
>TAIR9_protein||AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33 | SR33; RNA binding
/ protein binding | chr1:20630676-20632567 FORWARD
Length = 221
Score = 90 bits (222), Expect = 2e-018
Identities = 45/77 (58%), Positives = 52/77 (67%), Gaps = 8/77 (10%)
Frame = +3
Query: 78 PRRGYGGRGRSPPPPPRRGYGGGGGGGGRKGSSHGSLLVRNIPLDCRPEELRVPFERFGP 257
P RGYG RGRSP P G GGR SLLVRN+ DCR E+LR FE+FGP
Sbjct: 10 PPRGYGRRGRSPSP--------RGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGP 61
Query: 258 VKDVYIPRDYYSGEPRG 308
VKD+Y+PRDYY+G+PRG
Sbjct: 62 VKDIYLPRDYYTGDPRG 78
>TAIR9_protein||AT5G18810.1 | Symbols: SCL28 | SCL28; RNA binding / nucleic acid
binding / nucleotide binding | chr5:6268925-6271158 REVERSE
Length = 237
Score = 79 bits (192), Expect = 5e-015
Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Frame = +3
Query: 84 RGYGGRGRS-PPPPPRRGYGGG-----GGGGGRKGSSHGSLLVRNIPLDCRPEELRVPFE 245
R Y R R PP R+GY + S LL+RN+PLD RP +LR FE
Sbjct: 9 RSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFE 68
Query: 246 RFGPVKDVYIPRDYYSGEPRG 308
RFGP+KD+Y+PR+YY+GEPRG
Sbjct: 69 RFGPLKDIYLPRNYYTGEPRG 89
Score = 71 bits (172), Expect = 1e-012
Identities = 48/111 (43%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Frame = +1
Query: 307 EPQRSMNRRVFGGREITVVVASESRKRPEEMRVKTRTRSREPSGSR-GRSHGRSRSRSIS 483
E + MN +V GGREI +V A E+RK P+EMR T R R R R RS S
Sbjct: 103 EAMKRMNHKVIGGREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHS 162
Query: 484 RSRS-PRRPSDSRSRRRSRSYSPAPRRRGADYSASPRRRQEERPRSPLRSP 633
RSRS PRR S R YSP R R S PR +E + R+ RSP
Sbjct: 163 RSRSPPRRESRHSKVREDDLYSPRRRSRSISRSPLPRNEREYKSRN-CRSP 212
>TAIR9_protein||AT3G49430.1 | Symbols: SRp34a | SRp34a (Ser/Arg-rich protein
34a); RNA binding / nucleic acid binding / nucleotide binding |
chr3:18332668-18334829 FORWARD
Length = 301
Score = 66 bits (159), Expect = 4e-011
Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Frame = +1
Query: 367 ASESRKRPEEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRR-----PSDSRSRRR 531
+S SR R ++R+RSR S SRGR SRSRS+SRS+SPR+ P S SR
Sbjct: 200 SSRSRSRSPS---RSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSI 256
Query: 532 SRSYSPAPRRRGADYSASPR--RRQEERPRSPLRSPPR 639
S+S SP+P ++ + A R R R RSP +SPP+
Sbjct: 257 SKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPK 294
>TAIR9_protein||AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-629583 FORWARD
Length = 304
Score = 62 bits (150), Expect = 4e-010
Identities = 44/87 (50%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Frame = +1
Query: 412 RTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPR 591
R+ S+ S SRGRS RSRSRS SRSRSP+ S RS +S S SP PR + S SP
Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR--SPSP- 264
Query: 592 RRQEERPRSPLRSPPRGEGDAKYSRRS 672
RR R RSPL S + EG S+ S
Sbjct: 265 RRSRSRSRSPLPSVQK-EGSKSPSKPS 290
>TAIR9_protein||AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-629583 FORWARD
Length = 304
Score = 62 bits (150), Expect = 4e-010
Identities = 44/87 (50%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Frame = +1
Query: 412 RTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPR 591
R+ S+ S SRGRS RSRSRS SRSRSP+ S RS +S S SP PR + S SP
Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR--SPSP- 264
Query: 592 RRQEERPRSPLRSPPRGEGDAKYSRRS 672
RR R RSPL S + EG S+ S
Sbjct: 265 RRSRSRSRSPLPSVQK-EGSKSPSKPS 290
>TAIR9_protein||AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-628995 FORWARD
Length = 286
Score = 56 bits (134), Expect = 3e-008
Identities = 34/61 (55%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +1
Query: 412 RTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPR 591
R+ S+ S SRGRS RSRSRS SRSRSP+ S RS +S S SP PR + S SPR
Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR--SPSPR 265
Query: 592 R 594
R
Sbjct: 266 R 266
>TAIR9_protein||AT3G49430.2 | Symbols: SRp34a | SRp34a (Ser/Arg-rich protein
34a); RNA binding / nucleic acid binding / nucleotide binding |
chr3:18332668-18334617 FORWARD
Length = 298
Score = 54 bits (127), Expect = 2e-007
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Frame = +1
Query: 367 ASESRKRPEEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRR-----PSDSRSRRR 531
+S SR R ++R+RSR S SRGR SRSRS+SRS+SPR+ P S SR
Sbjct: 200 SSRSRSRSPS---RSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSI 256
Query: 532 SRSYSPAPRRR 564
S+S SP+P ++
Sbjct: 257 SKSRSPSPDKK 267
>TAIR9_protein||AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:1985697-1989666 REVERSE
Length = 1089
Score = 52 bits (123), Expect = 5e-007
Identities = 34/65 (52%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Frame = +1
Query: 376 SRKR-PEEMRVKTR----TRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRS 540
SR R P+ +R + R +RSR SGS RS RSRS S SRSRSPR D RSRS
Sbjct: 954 SRSRSPDLVRPRRRSSSYSRSRSRSGSYSRSRSRSRSWSRSRSRSPRHSRDRGGHNRSRS 1013
Query: 541 YSPAP 555
YS +P
Sbjct: 1014 YSRSP 1018
>TAIR9_protein||AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative /
SR1 protein, putative | chr4:1069186-1071313 FORWARD
Length = 279
Score = 52 bits (123), Expect = 5e-007
Identities = 35/68 (51%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +1
Query: 394 EMRVKTRTRSREPSGSRGRSHGRSRSRSISR--SRSPRRPSDSRSRRRSRSYSPAPRRRG 567
+ R +R RS S SRGRS RSRSRS SR SRSP+ S RS +S S SP R R
Sbjct: 198 DSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKSTSRSPRSRSRS 257
Query: 568 ADYSASPR 591
S SPR
Sbjct: 258 KSRSLSPR 265
>TAIR9_protein||AT3G23900.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:8631941-8635852 REVERSE
Length = 988
Score = 49 bits (116), Expect = 4e-006
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 5/153 (3%)
Frame = +1
Query: 382 KRPEEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSD--SRSRRRSRSYSPAP 555
+RP R ++ R + S GR SR IS SR R + S S RRSRS SP
Sbjct: 541 RRPRSHRSRSPLRYQRRSTYEGRRRSYRDSRDISESRRYGRSDEHHSSSSRRSRSVSPKK 600
Query: 556 RRRGADYSASPRRRQEERPRSPLRSPPRGEGDAKYSRRSYSPGYEGAATAAEDRDTNGDN 735
R+ G + S R R++ R +S G + + S + + R +
Sbjct: 601 RKSGQEDSELSRLRRDSSSRGEKKSSRAGSRSPRRRKEVKSTPRDDEENKVKRRTRSRSR 660
Query: 736 ETREKLDYEPEERRRGGREVSRSPSGSRSRSVE 834
+ D + + R E+ SRSRS E
Sbjct: 661 SVEDSADIKDKSR---DEELKHHKKRSRSRSRE 690
>TAIR9_protein||AT3G23900.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:8632717-8635852 REVERSE
Length = 935
Score = 49 bits (116), Expect = 4e-006
Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 5/153 (3%)
Frame = +1
Query: 382 KRPEEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSD--SRSRRRSRSYSPAP 555
+RP R ++ R + S GR SR IS SR R + S S RRSRS SP
Sbjct: 541 RRPRSHRSRSPLRYQRRSTYEGRRRSYRDSRDISESRRYGRSDEHHSSSSRRSRSVSPKK 600
Query: 556 RRRGADYSASPRRRQEERPRSPLRSPPRGEGDAKYSRRSYSPGYEGAATAAEDRDTNGDN 735
R+ G + S R R++ R +S G + + S + + R +
Sbjct: 601 RKSGQEDSELSRLRRDSSSRGEKKSSRAGSRSPRRRKEVKSTPRDDEENKVKRRTRSRSR 660
Query: 736 ETREKLDYEPEERRRGGREVSRSPSGSRSRSVE 834
+ D + + R E+ SRSRS E
Sbjct: 661 SVEDSADIKDKSR---DEELKHHKKRSRSRSRE 690
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,628,668,842
Number of Sequences: 33410
Number of Extensions: 22628668842
Number of Successful Extensions: 713028804
Number of sequences better than 0.0: 0
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