BLASTX 7.6.2
Query= UN47712 /QuerySize=1679
(1678 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G35890.1 | Symbols: | La domain-containing pr... 523 2e-148
TAIR9_protein||AT5G66100.1 | Symbols: | La domain-containing pr... 207 2e-053
TAIR9_protein||AT5G21160.1 | Symbols: | La domain-containing pr... 89 6e-018
TAIR9_protein||AT5G46250.1 | Symbols: | RNA recognition motif (... 52 1e-006
TAIR9_protein||AT5G46250.2 | Symbols: | RNA recognition motif (... 52 1e-006
TAIR9_protein||AT5G46250.3 | Symbols: | RNA recognition motif (... 52 1e-006
>TAIR9_protein||AT4G35890.1 | Symbols: | La domain-containing protein |
chr4:16997433-17000410 FORWARD
Length = 524
Score = 523 bits (1345), Expect = 2e-148
Identities = 296/474 (62%), Positives = 345/474 (72%), Gaps = 30/474 (6%)
Frame = +2
Query: 200 PTAAQSRRPSRHVSS----SPWTQIVRGDSDPPTIVSVAPSSPQSKPRIDPIAASSSSSS 367
P++ QSR P ++S +P ++ ++ S A S Q P+ S+ +
Sbjct: 65 PSSPQSRAPIEPIASVSVAAPTAAVLTVEAAAGDEKSEA-SGGQDNAGKKPVWKRPSNGA 123
Query: 368 STEVGPVMGASSWPALSETTN-NNNKSSSDSLKSLG----VGSSPPPVPVSQGIANASVP 532
S EVGPVMGASSWPALSETT +NKSSSDSLKSLG S+ VPV+QGIANASVP
Sbjct: 124 S-EVGPVMGASSWPALSETTKAPSNKSSSDSLKSLGDVPSSSSASSSVPVTQGIANASVP 182
Query: 533 SAPKQPGRSNPNPTLNHSRQRSFKRNGASSGSPANGTAPQPSAQGSLAE--SHNPSPRGQ 706
APKQ GR+NPNPT NHSRQRSFK+ +SGS ANGT QPSAQGS E SHNPSPRGQ
Sbjct: 183 -APKQAGRANPNPTPNHSRQRSFKQRNGASGS-ANGTVSQPSAQGSFTELPSHNPSPRGQ 240
Query: 707 NQRNGFPSQTHGGGGTDNVTQRDSYRNQNGNHHQSHGGRRNQEHGNQNWTFSRSFNGRDG 886
NQ+NGF SQ H GGT+N +QRDSYRNQNGNHHQSHGGRRNQEHGNQNWTF RSFNGR+G
Sbjct: 241 NQKNGFASQNH--GGTENPSQRDSYRNQNGNHHQSHGGRRNQEHGNQNWTFQRSFNGREG 298
Query: 887 NAQSQRGAPAFVRHPPSPVQPIPPQYMAAQPFASPLPFPPELA-SQYYQRMPFVAPLSPA 1063
NAQSQRG PAFVRHP VQPI PQ+MAAQPF S +PFP ELA S YY RMP++ P+
Sbjct: 299 NAQSQRGTPAFVRHPSPTVQPI-PQFMAAQPFPSHIPFPTELAQSSYYPRMPYMTPIPHG 357
Query: 1064 P-VFYHVQDPPLNIKLQEQIHYYFSEENLIKDMYLRRQIDDQGFVPLPVIAVFNKVAELT 1240
P FYH QDPPL++KL +QI YYFS+ENLI D+YLR ++++GFVPL V+A F KVAELT
Sbjct: 358 PQFFYHYQDPPLHMKLHKQIQYYFSDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELT 417
Query: 1241 DSVQQIADALQGSPVVEVQGDRIRKRFNWQHWLIPQEPNPAVLSPQSV---GAVASRVGN 1411
D++QQI +ALQ SP VEVQGD IRKR NWQ+W++ + NP PQSV AVA R+GN
Sbjct: 418 DNIQQIVEALQNSPHVEVQGDFIRKRDNWQNWVLRR--NPTGSGPQSVDRADAVAKRLGN 475
Query: 1412 LAIGESSAGPNGGSSSHHLQPAGAENEAVSDGQQQSPGGVPVSNRNDSDGANR* 1573
L++ +SSA P GGSSS LQP EA+SD QQQS PVSN N DGANR*
Sbjct: 476 LSVDQSSADPIGGSSS-QLQP----TEALSDDQQQSSSTAPVSNHNAPDGANR* 524
Score = 72 bits (176), Expect = 7e-013
Identities = 50/96 (52%), Positives = 63/96 (65%), Gaps = 8/96 (8%)
Frame = +2
Query: 134 SSATSNNNPNS--SSRHTTENRGSPTA--AQS-RRPSRHVSSSPWTQIVRGDSDPPTIVS 298
+SATSNN +S S R + N GSPTA AQS RRPSR V SSPWTQIVRG+S+P +
Sbjct: 2 ASATSNNPASSSMSPRRISGNHGSPTASVAQSPRRPSRQV-SSPWTQIVRGESEPIAAAA 60
Query: 299 --VAPSSPQSKPRIDPIAASSSSSSSTEVGPVMGAS 400
PSSPQS+ I+PIA+ S ++ + V V A+
Sbjct: 61 AVAGPSSPQSRAPIEPIASVSVAAPTAAVLTVEAAA 96
>TAIR9_protein||AT5G66100.1 | Symbols: | La domain-containing protein |
chr5:26427639-26429772 FORWARD
Length = 454
Score = 207 bits (526), Expect = 2e-053
Identities = 157/477 (32%), Positives = 246/477 (51%), Gaps = 75/477 (15%)
Frame = +2
Query: 137 SATSNNNPNSSSRHTTENRGSPTAAQSRRPSRHVSSSPWTQIVRGDSDPPTIVSVAPSSP 316
+ T+++ NS+SR + ++ S SRH SSPW ++ DS +S++ P
Sbjct: 3 ATTASSAANSASRFSIDS--------SISRSRHGDSSPW--LLPSDSHDHPTLSLSQDDP 52
Query: 317 QSKPRIDPIAASS------------------SSSSSTEVGPVMGAS-SWPALSETTNNNN 439
S P + P ++ SS+SS++VGPVMGA+ SWPALS + +++
Sbjct: 53 FSAPSVSPPTGNNSSDYDNADKKPPPVWNMPSSNSSSDVGPVMGAAESWPALSLSARSSS 112
Query: 440 --KSSSDSLKSLGVGSS---PPPVPVSQGIANASVPSAPKQPGRSNPNPTLNHSRQRSFK 604
S D+ K GSS PPP S NA+ S+ S+ N +N+S+++ F+
Sbjct: 113 IKSPSLDASKPFPDGSSSSIPPPQATSNTSTNANAGSSVS--ATSSENSAVNNSQRKPFR 170
Query: 605 RNGASSGSPANGTAPQPSAQGSLAESHNPSPRGQNQRNGFPSQTHGGGGTDNVTQRDSYR 784
RN +S S S+ S A N + +QR GGG + R+S R
Sbjct: 171 RNNNTSSS-------STSSNVSNAAPLNTRDQNHSQR--------GGGSFGSGNFRNSQR 215
Query: 785 NQNGNHHQ-----SHGGRRNQEHGNQNWTFSRSFNGRDGNAQSQRGA----PAFVRHPPS 937
N+N + + HG RRN EHGNQ+ R+++GRD + Q QRG P + PPS
Sbjct: 216 NRNSSSYPRGEGLHHGNRRNYEHGNQSGFSHRNYSGRDMHLQPQRGVGMIRPQMLMGPPS 275
Query: 938 PVQPIPPQYMAAQPFAS---PLPFPPELASQYYQRMP------FVAPLSPAPVFYHVQDP 1090
QYMAA S P+ + P+ A + P V P P+++ D
Sbjct: 276 -FPASSAQYMAAPQLGSYGGPIIY-PDYAQHVFMPHPSPDPMGLVGPFPLQPMYFRNFDA 333
Query: 1091 PLNIKLQEQIHYYFSEENLIKDMYLRRQIDDQGFVPLPVIAVFNKVAELTDSVQQIADAL 1270
L K+ Q+ YYFS +NL +D +LR Q++D+G+VP+ VIA F ++AELT+++Q I +AL
Sbjct: 334 ILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRLAELTNNIQTILEAL 393
Query: 1271 QGSPVVEVQGDRIRKRFNWQHWLIPQEPN---PAVLSPQSVGAVASRVGNLAIGESS 1432
+ S VVE+QG+ +R+R +W +L+P+EP+ PA + + V S++ ++ + E S
Sbjct: 394 RSSEVVEIQGETLRRRGDWDKYLLPREPSRSGPAAGASNNASLV-SQIESMTLSERS 449
>TAIR9_protein||AT5G21160.1 | Symbols: | La domain-containing protein /
proline-rich family protein | chr5:7199191-7203879 REVERSE
Length = 827
Score = 89 bits (220), Expect = 6e-018
Identities = 75/253 (29%), Positives = 112/253 (44%), Gaps = 26/253 (10%)
Frame = +2
Query: 851 WTFSRSFNGRD---GNAQSQRGAPAFVRHP------PSPVQPIPPQYM-AAQPFASPLPF 1000
W R F+ R+ G G P F+ P P P P Y+ P A P+
Sbjct: 196 WPHQRGFDPRNMPQGAGPRNFGRPPFMGPAPGFLVGPGPGFPGPVYYLPGPPPGAIRGPY 255
Query: 1001 PPELASQYYQRMPFVAPLSPAPVFYHVQDPPLNIKLQEQIHYYFSEENLIKDMYLRRQID 1180
PP A P+ P++ P + L ++ +Q+ YYFS+ENL D YL +D
Sbjct: 256 PPRFA-------PY--PVNQGPPILSPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMD 306
Query: 1181 DQGFVPLPVIAVFNKVAELTDSVQQIADALQGSPVVEVQGDRIRKRFNWQHWLIPQEPNP 1360
++G+VP +IA F +V +T V I AL S VEVQGD+IRKR W W+ + +
Sbjct: 307 EEGWVPTKIIAGFKRVKAMTMDVDFIVYALGFSNSVEVQGDQIRKRDKWSDWIPASKKS- 365
Query: 1361 AVLSPQSVG-AVASRVGNLAIGESSAGPNGGSSSHHLQPAGAENEAVSDGQQQSPGGVPV 1537
S +++G ++ G++ P+ GSS + +E S G +
Sbjct: 366 --TSAETIGDGDKDSPKSITSGDNFGNPSKGSSKPTVSDFSSEGAQSSRTNNYKSGNLKS 423
Query: 1538 S---NRNDSDGAN 1567
S RN D +N
Sbjct: 424 SADEKRNVEDLSN 436
>TAIR9_protein||AT5G46250.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:18755388-18758056 FORWARD
Length = 423
Score = 52 bits (122), Expect = 1e-006
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +2
Query: 1094 LNIKLQEQIHYYFSEENLIKDMYLRRQI--DDQGFVPLPVIAVFNKVAELTDSVQQIADA 1267
LN K+ Q+ YYFS+ENL D +L + + +GFVP+ IA F+K+ +LT I A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162
Query: 1268 LQGSPVVEVQGD 1303
L+ S + V D
Sbjct: 163 LKESSFLVVSAD 174
>TAIR9_protein||AT5G46250.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:18755388-18757723 FORWARD
Length = 341
Score = 52 bits (122), Expect = 1e-006
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +2
Query: 1094 LNIKLQEQIHYYFSEENLIKDMYLRRQI--DDQGFVPLPVIAVFNKVAELTDSVQQIADA 1267
LN K+ Q+ YYFS+ENL D +L + + +GFVP+ IA F+K+ +LT I A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162
Query: 1268 LQGSPVVEVQGD 1303
L+ S + V D
Sbjct: 163 LKESSFLVVSAD 174
>TAIR9_protein||AT5G46250.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:18755388-18757723 FORWARD
Length = 341
Score = 52 bits (122), Expect = 1e-006
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +2
Query: 1094 LNIKLQEQIHYYFSEENLIKDMYLRRQI--DDQGFVPLPVIAVFNKVAELTDSVQQIADA 1267
LN K+ Q+ YYFS+ENL D +L + + +GFVP+ IA F+K+ +LT I A
Sbjct: 103 LNQKIIRQVEYYFSDENLPTDKFLLNAMKRNKKGFVPISTIATFHKMKKLTRDHALIVSA 162
Query: 1268 LQGSPVVEVQGD 1303
L+ S + V D
Sbjct: 163 LKESSFLVVSAD 174
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,816,456,783
Number of Sequences: 33410
Number of Extensions: 22816456783
Number of Successful Extensions: 723340916
Number of sequences better than 0.0: 0
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