BLASTX 7.6.2
Query= UN48124 /QuerySize=1065
(1064 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic ... 240 2e-062
sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=... 166 3e-040
sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic O... 155 7e-037
sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=... 149 4e-035
sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic O... 139 5e-032
sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=... 137 2e-031
sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=... 106 3e-022
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=... 105 6e-022
sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=... 104 1e-021
sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=... 98 8e-020
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis
thaliana GN=At2g37220 PE=1 SV=1
Length = 289
Score = 240 bits (610), Expect = 2e-062
Identities = 129/162 (79%), Positives = 141/162 (87%), Gaps = 8/162 (4%)
Frame = -3
Query: 1038 MAASASSLALSTFNPKSLPFSISRPASTPFLPPSLSFKLNSQSISLSVSA-----ASRFV 874
MAASASSLALS+FNPKSLPF +SRPAS L PSLSFKLNS S+S S++A ASRF
Sbjct: 1 MAASASSLALSSFNPKSLPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAKWNSPASRFA 60
Query: 873 RNVAVTDDFSVEEEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNV 694
RNVA+T +F VEE+ F+D APP +EQSFSADLKLFVGNLPF+VDSAQLAQLFESAGNV
Sbjct: 61 RNVAITSEFEVEEDG--FADVAPP-KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNV 117
Query: 693 EMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDG 568
EMVEVIYDK+TGRSRGFGFVTMSSVSEVEAA QQFNGYELDG
Sbjct: 118 EMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDG 159
Score = 176 bits (444), Expect = 4e-043
Identities = 85/95 (89%), Positives = 92/95 (96%)
Frame = -3
Query: 570 GGGGGAGSGNRVYVGSLSWGVDDMALESLFGEQGKVSEARVIYDRDSGRSKGFGFVTYNS 391
GGG GAGSGNRVYVG+LSWGVDDMALESLF EQGKV EARVIYDRDSGRSKGFGFVTY+S
Sbjct: 195 GGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDS 254
Query: 390 AQEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 286
+QEVQNAI++L+GADLDGRQIRVSEAEARPPRRQ+
Sbjct: 255 SQEVQNAIKSLDGADLDGRQIRVSEAEARPPRRQY 289
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis
thaliana GN=RBP29 PE=1 SV=2
Length = 342
Score = 166 bits (419), Expect = 3e-040
Identities = 86/125 (68%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
Frame = -3
Query: 660 GRSRGFGFVTMSSVSEVEAAEQQFNGYELDGGGGGAGSGNRVYVGSLSWGVDDMALESLF 481
G RG G+ + S +++ G G G G+GSGNR+YVG+LSWGVDDMALE+LF
Sbjct: 219 GSERGGGYGSQRSGGGYGGSQRSSYG-SGSGSGSGSGSGNRLYVGNLSWGVDDMALENLF 277
Query: 480 GEQGKVSEARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRNLNGADLDGRQIRVSEAEARP 301
EQGKV EARVIYDRDSGRSKGFGFVT +S+QEVQ AI +LNGADLDGRQIRVSEAEARP
Sbjct: 278 NEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 337
Query: 300 PRRQF 286
PR QF
Sbjct: 338 PRGQF 342
Score = 163 bits (412), Expect = 2e-039
Identities = 99/165 (60%), Positives = 114/165 (69%), Gaps = 8/165 (4%)
Frame = -3
Query: 1047 SSSMAASASSLALSTFNPKS---LPFSISRPASTPFLPPSLSFKLNSQSISLSVSAASRF 877
SS A + SL L P S LP S+S + L F ++ S SRF
Sbjct: 6 SSLSAFNPKSLPLCVSRPASVSVLPPSLSFKLHSDHLVS--IFASSALKCSSPAEYPSRF 63
Query: 876 VRNVAVTDDFSVEEEDGVFS--DDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESA 703
VRNVAV+ DF VEE+D +F+ DD+ P + SFS DLKLFVGNL F+VDSAQLAQLFESA
Sbjct: 64 VRNVAVSSDFEVEEDD-MFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESA 122
Query: 702 GNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDG 568
GNVEMVEVIYDKVTGRSRGFGFVTMS+ +EVEAA QQFNGYE +G
Sbjct: 123 GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEG 167
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana
sylvestris PE=2 SV=1
Length = 273
Score = 155 bits (390), Expect = 7e-037
Identities = 96/168 (57%), Positives = 113/168 (67%), Gaps = 12/168 (7%)
Frame = -3
Query: 1032 ASASSLALSTFNPKSLPF--SISRPASTPF--LPPSLSFKLNSQSISLSVSAASRFVRNV 865
+SASSL + P++LP S+ S F LPPS LN S S +SRFVR V
Sbjct: 3 SSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPS---SLNLSLSSSSSCFSSRFVRKV 59
Query: 864 AVTDDFSVEE-EDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEM 688
++D +E+ EDG D ++E++FS DLK+FVGNLPF DSA LA+LFE AGNVEM
Sbjct: 60 TLSDFDQIEDVEDG----DDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEM 115
Query: 687 VEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGGGGGAGSG 544
VEVIYDK+TGRSRGFGFVTMSS EVEAA QQFNGYELDG SG
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG 163
Score = 145 bits (364), Expect = 7e-034
Identities = 69/94 (73%), Positives = 81/94 (86%)
Frame = -3
Query: 567 GGGGAGSGNRVYVGSLSWGVDDMALESLFGEQGKVSEARVIYDRDSGRSKGFGFVTYNSA 388
GGG S NRVYVG+L+WGVD ALE+LF EQGKV +A+V+YDRDSGRS+GFGFVTY+SA
Sbjct: 180 GGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSA 239
Query: 387 QEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 286
+EV NAI +L+G DL+GR IRVS AEARPPRRQF
Sbjct: 240 EEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 273
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 149 bits (375), Expect = 4e-035
Identities = 95/168 (56%), Positives = 111/168 (66%), Gaps = 12/168 (7%)
Frame = -3
Query: 1032 ASASSLALSTFNPKS--LPFSISRPASTPF--LPPSLSFKLNSQSISLSVSAASRFVRNV 865
+SASSL + P++ LP S+ S F LPPS LN S S +SRFVR V
Sbjct: 3 SSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPS---SLNLSLSSPSSCFSSRFVRKV 59
Query: 864 AVTDDFSVEE-EDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEM 688
+ D +E+ EDG D ++E++FS DLK+FVGNL F DSA LA+LFE AGNVEM
Sbjct: 60 TLPDFDQIEDVEDG----DEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEM 115
Query: 687 VEVIYDKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDGGGGGAGSG 544
VEVIYDK+TGRSRGFGFVTMSS EVEAA QQFNGYELDG SG
Sbjct: 116 VEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSG 163
Score = 145 bits (364), Expect = 7e-034
Identities = 69/94 (73%), Positives = 81/94 (86%)
Frame = -3
Query: 567 GGGGAGSGNRVYVGSLSWGVDDMALESLFGEQGKVSEARVIYDRDSGRSKGFGFVTYNSA 388
GGG S NRVYVG+L+WGVD ALE+LF EQGKV +A+V+YDRDSGRS+GFGFVTY+SA
Sbjct: 186 GGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSA 245
Query: 387 QEVQNAIRNLNGADLDGRQIRVSEAEARPPRRQF 286
+EV NAI +L+G DL+GR IRVS AEARPPRRQF
Sbjct: 246 EEVNNAIESLDGVDLNGRAIRVSPAEARPPRRQF 279
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana
sylvestris PE=2 SV=1
Length = 291
Score = 139 bits (348), Expect = 5e-032
Identities = 82/155 (52%), Positives = 102/155 (65%), Gaps = 7/155 (4%)
Frame = -3
Query: 1011 LSTFNPKSLPFSISRPASTPFLPPSLS---FKLNSQSISLSVSAASRFVRNV-AVTDDFS 844
+++ + SL F P + L P+ + F L S S++LS+S++S + ++ FS
Sbjct: 1 MASSSVSSLQFLFVTPQTPSSLKPNSTLSFFSLPSSSLNLSLSSSSTGLCSIKPFESSFS 60
Query: 843 VEEEDGVF---SDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIY 673
F DD ++ FS DLKLFVGNLPF VDSA LA LFE AGNVEMVEVIY
Sbjct: 61 TRVALSGFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIY 120
Query: 672 DKVTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDG 568
DK+TGRSRGFGFVTMS+ EVEAAEQQFNGYE+DG
Sbjct: 121 DKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDG 155
Score = 133 bits (333), Expect = 3e-030
Identities = 63/92 (68%), Positives = 76/92 (82%)
Frame = -3
Query: 567 GGGGAGSGNRVYVGSLSWGVDDMALESLFGEQGKVSEARVIYDRDSGRSKGFGFVTYNSA 388
GG S NRVYVG+LSWGVDD+AL+ LF EQG V +A+V+YDRDSGRS+GFGFVTY+S+
Sbjct: 199 GGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSS 258
Query: 387 QEVQNAIRNLNGADLDGRQIRVSEAEARPPRR 292
+EV +AI +LNG DLDGR IRVS AE RP R+
Sbjct: 259 KEVNDAIDSLNGVDLDGRSIRVSAAEERPRRQ 290
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 137 bits (343), Expect = 2e-031
Identities = 83/150 (55%), Positives = 97/150 (64%), Gaps = 16/150 (10%)
Frame = -3
Query: 1008 STFNPKSLPFSISRPASTPFLPPSLSFKLNSQSISLSVSA---ASRFVRNVAVTDDFSVE 838
S+ P S S P+S SL+ L+S SI S S S F VA++D +E
Sbjct: 20 SSLKPNSTLSFFSLPSS------SLNLSLSSSSIGHSASIKPFESSFSTRVALSDFDQLE 73
Query: 837 EEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYDKVTG 658
DD ++ FS DLKLFVGNLPF VDSA LA LFE AGNVE+VEVIYDK++G
Sbjct: 74 -------DDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSG 126
Query: 657 RSRGFGFVTMSSVSEVEAAEQQFNGYELDG 568
RSRGFGFVTMS+ EVEAAEQQFNGYE+DG
Sbjct: 127 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDG 156
Score = 134 bits (335), Expect = 2e-030
Identities = 64/92 (69%), Positives = 76/92 (82%)
Frame = -3
Query: 567 GGGGAGSGNRVYVGSLSWGVDDMALESLFGEQGKVSEARVIYDRDSGRSKGFGFVTYNSA 388
GG S NRVYVG+LSWGVDD+AL+ LF EQG V +A+V+YDRDSGRS+GFGFVTY+SA
Sbjct: 200 GGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSA 259
Query: 387 QEVQNAIRNLNGADLDGRQIRVSEAEARPPRR 292
+EV +AI +LNG DLDGR IRVS AE RP R+
Sbjct: 260 KEVNDAIDSLNGIDLDGRSIRVSAAEERPRRQ 291
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis
thaliana GN=RBP31 PE=1 SV=1
Length = 329
Score = 106 bits (264), Expect = 3e-022
Identities = 51/85 (60%), Positives = 64/85 (75%)
Frame = -3
Query: 540 RVYVGSLSWGVDDMALESLFGEQGKVSEARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRN 361
RVYVG+L W VD+ LE LF E GKV EARV+YDR++GRS+GFGFVT + E+ AI
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 360 LNGADLDGRQIRVSEAEARPPRRQF 286
L+G +L+GR IRV+ AE RPPRR +
Sbjct: 305 LDGQNLEGRAIRVNVAEERPPRRGY 329
Score = 94 bits (231), Expect = 2e-018
Identities = 49/93 (52%), Positives = 66/93 (70%), Gaps = 2/93 (2%)
Frame = -3
Query: 840 EEEDGVFSDDAPPQQEQ--SFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYDK 667
+E +G S+ A ++ + S + KLFVGNL +DV+S LA LFE AG VE+ EVIY++
Sbjct: 126 DESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNR 185
Query: 666 VTGRSRGFGFVTMSSVSEVEAAEQQFNGYELDG 568
T +SRGFGFVTMSSV E E A ++FN Y+L+G
Sbjct: 186 ETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNG 218
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 315
Score = 105 bits (261), Expect = 6e-022
Identities = 50/85 (58%), Positives = 62/85 (72%)
Frame = -3
Query: 540 RVYVGSLSWGVDDMALESLFGEQGKVSEARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRN 361
R+YVG++ WG+DD LE LF E GKV ARV+YDR++GRS+GFGFVT S E+ +AI N
Sbjct: 231 RIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIAN 290
Query: 360 LNGADLDGRQIRVSEAEARPPRRQF 286
L+G LDGR IRV+ AE R R F
Sbjct: 291 LDGQSLDGRTIRVNVAEDRSRRNTF 315
Score = 94 bits (231), Expect = 2e-018
Identities = 49/90 (54%), Positives = 65/90 (72%), Gaps = 1/90 (1%)
Frame = -3
Query: 837 EEDGVFSDDAPPQQEQSFSADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYDKVTG 658
E D V +D+ ++ Q D KLFVGNLP+DVDS LA+LFE AG VE+ EVIY++ T
Sbjct: 116 ESDEVEADE-EEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTD 174
Query: 657 RSRGFGFVTMSSVSEVEAAEQQFNGYELDG 568
+SRGFGFVTMS+V E E A + +N Y+++G
Sbjct: 175 QSRGFGFVTMSTVEEAEKAVEMYNRYDVNG 204
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 276
Score = 104 bits (258), Expect = 1e-021
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = -3
Query: 540 RVYVGSLSWGVDDMALESLFGEQGKVSEARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRN 361
R+YVG++ W +DD LE +F E GKV ARV++DR+SGRS+GFGFVT +S E+ AI N
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 360 LNGADLDGRQIRVSEAEARPPRRQF 286
L+G LDGR IRV+ AE RP R +
Sbjct: 252 LDGQTLDGRTIRVNAAEERPRRNTY 276
Score = 97 bits (240), Expect = 2e-019
Identities = 59/131 (45%), Positives = 78/131 (59%), Gaps = 8/131 (6%)
Frame = -3
Query: 948 LPPSLSFKLNSQSISLSVSAASRFVRNVAVTDDFSVEEEDGVF----SDDAPPQQEQSFS 781
LP LS + VS S N V DD +E+ G F + ++ Q S
Sbjct: 39 LPTLLSLNKRTTQFPTFVSVLSE-DDNTLVLDD---QEQGGDFPSFVGEAGETEEYQEPS 94
Query: 780 ADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAA 601
D KLFVGNLP+D+DS LAQLF+ AG VE+ EVIY++ T RSRGFGFVTMS+V E + A
Sbjct: 95 EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKA 154
Query: 600 EQQFNGYELDG 568
+ ++ Y+L+G
Sbjct: 155 VELYSQYDLNG 165
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia
oleracea PE=1 SV=1
Length = 233
Score = 98 bits (243), Expect = 8e-020
Identities = 49/82 (59%), Positives = 59/82 (71%)
Frame = -3
Query: 540 RVYVGSLSWGVDDMALESLFGEQGKVSEARVIYDRDSGRSKGFGFVTYNSAQEVQNAIRN 361
RVYVG+L W VD LE LF E GKV ARV+ DR++GRS+GFGFVT +S EV +AI
Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAA 209
Query: 360 LNGADLDGRQIRVSEAEARPPR 295
L+G LDGR +RV+ AE RP R
Sbjct: 210 LDGQTLDGRAVRVNVAEERPRR 231
Score = 96 bits (238), Expect = 3e-019
Identities = 49/87 (56%), Positives = 64/87 (73%), Gaps = 3/87 (3%)
Frame = -3
Query: 819 SDDAPPQQEQSFS---ADLKLFVGNLPFDVDSAQLAQLFESAGNVEMVEVIYDKVTGRSR 649
SD+ + Q FS + KLFVGNLP+DVDS +LA +F++AG VE+ EVIY++ T RSR
Sbjct: 37 SDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSR 96
Query: 648 GFGFVTMSSVSEVEAAEQQFNGYELDG 568
GFGFVTMS+V E E A + NGY++DG
Sbjct: 97 GFGFVTMSTVEEAEKAVELLNGYDMDG 123
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 179,562,798,598
Number of Sequences: 518415
Number of Extensions: 179562798598
Number of Successful Extensions: 1108384839
Number of sequences better than 0.0: 0
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