BLASTX 7.6.2
Query= UN48203 /QuerySize=934
(933 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT4G03130.1 | Symbols: | transcription coactivat... 233 2e-061
TAIR9_protein||AT3G21480.1 | Symbols: | FUNCTIONS IN: molecular... 164 7e-041
TAIR9_protein||AT4G03120.1 | Symbols: | proline-rich family pro... 107 1e-023
TAIR9_protein||AT1G61080.1 | Symbols: | proline-rich family pro... 59 5e-009
TAIR9_protein||AT4G13340.1 | Symbols: | leucine-rich repeat fam... 58 9e-009
TAIR9_protein||AT4G20440.1 | Symbols: smB | smB (small nuclear r... 54 1e-007
TAIR9_protein||AT4G20440.2 | Symbols: smB | smB (small nuclear r... 54 1e-007
TAIR9_protein||AT4G20440.3 | Symbols: smB | smB (small nuclear r... 54 1e-007
TAIR9_protein||AT4G20440.4 | Symbols: | smB (small nuclear ribo... 54 1e-007
TAIR9_protein||AT3G19320.1 | Symbols: | leucine-rich repeat fam... 50 1e-006
TAIR9_protein||AT1G26250.1 | Symbols: | proline-rich extensin, ... 49 4e-006
>TAIR9_protein||AT4G03130.1 | Symbols: | transcription coactivator |
chr4:1387781-1390646 REVERSE
Length = 767
Score = 233 bits (592), Expect = 2e-061
Identities = 112/146 (76%), Positives = 131/146 (89%)
Frame = -3
Query: 931 LEAIALGKPVVTPLWLESCGQTRCLLDEKNYILKDSKKEKEGFSMRTSLARAKQHPLLKG 752
LEAIALGK VVTP+WLESC QTRCL+DEK+YIL+D KKEK+GF + TSLARAKQHPLLKG
Sbjct: 610 LEAIALGKFVVTPIWLESCAQTRCLIDEKSYILRDIKKEKDGFCLLTSLARAKQHPLLKG 669
Query: 751 LKVCITPNIKPGRGMISHLVKLTQGQVVEISEIIAAANRKIPDDLLIISCEDDRDLCLPF 572
KVCITP+IKP RGMI+ LVK+TQGQVVE SEIIAA +R P+D+LI+SC++DRD CLPF
Sbjct: 670 FKVCITPSIKPSRGMITDLVKMTQGQVVEASEIIAAEDRNFPEDVLILSCKEDRDFCLPF 729
Query: 571 IDQGAEIYTAELLLNGIVIQKLEYDR 494
++QGA I+T+ELLLNGIVIQKLEY R
Sbjct: 730 VNQGAVIFTSELLLNGIVIQKLEYAR 755
>TAIR9_protein||AT3G21480.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357);
BEST Arabidopsis thaliana protein match is: transcription coactivator
(TAIR:AT4G03130.1); Has 489 Blast hits to 455 proteins in 115 species:
Archae - 2; Bacteria - 37; Metazoa - 270; Fungi - 30; Plants - 45;
Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). |
chr3:7567730-7571990 FORWARD
Length = 1042
Score = 164 bits (415), Expect = 7e-041
Identities = 85/151 (56%), Positives = 111/151 (73%), Gaps = 1/151 (0%)
Frame = -3
Query: 931 LEAIALGKPVVTPLWLESCGQTRCLLDEKNYILKDSKKEKE-GFSMRTSLARAKQHPLLK 755
LEAIA GKPVVT WLES Q +DE YIL+DSKKEKE F+M SLARA+Q PLL+
Sbjct: 866 LEAIASGKPVVTTQWLESIDQVNIYVDEDMYILRDSKKEKEFCFNMGVSLARARQFPLLQ 925
Query: 754 GLKVCITPNIKPGRGMISHLVKLTQGQVVEISEIIAAANRKIPDDLLIISCEDDRDLCLP 575
G +V ITPN KP I+ LVK G VE + + K+P++LL++SCE+DR +C+P
Sbjct: 926 GRRVFITPNTKPALNTITTLVKAVHGLPVERLGRSSLSEDKVPENLLVLSCEEDRAICIP 985
Query: 574 FIDQGAEIYTAELLLNGIVIQKLEYDRHCLF 482
F+++GAE+Y++ELLLNGIV Q+LEY+R+ LF
Sbjct: 986 FLERGAEVYSSELLLNGIVTQRLEYERYRLF 1016
>TAIR9_protein||AT4G03120.1 | Symbols: | proline-rich family protein |
chr4:1385747-1387331 FORWARD
Length = 208
Score = 107 bits (266), Expect = 1e-023
Identities = 56/88 (63%), Positives = 57/88 (64%), Gaps = 13/88 (14%)
Frame = +1
Query: 28 MPPPGVPQMMAPPGGPLPPP-----PPQNGILRPPGLAPIPGQGGAPPPNYTGLPPPPPY 192
M PPG P P G L PP P Q G PPG+APIPGQGG PPPNY GLPPPPPY
Sbjct: 119 MAPPGAPLPPPPQNGILRPPGMAPIPGQGG--GPPGMAPIPGQGGGPPPNYNGLPPPPPY 176
Query: 193 HTNPTAAPPSVGF-----NNPNPGAESP 261
HTNP AAPPS F NNPNP AESP
Sbjct: 177 HTNP-AAPPSGNFNNPNLNNPNPSAESP 203
Score = 100 bits (248), Expect = 2e-021
Identities = 52/78 (66%), Positives = 54/78 (69%), Gaps = 10/78 (12%)
Frame = +1
Query: 22 GYMPPPGVPQMMAPPGGPLPPPPPQNGILRPPGLAPIPGQGGAPP-----PNYTGLPPPP 186
GYMPPPGVPQMMAPPG PL PPPPQNGILRPPG+APIPGQGG PP P G PPP
Sbjct: 108 GYMPPPGVPQMMAPPGAPL-PPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGG-GPPP 165
Query: 187 PYHTNPTAAPPSVGFNNP 240
Y+ P PP NP
Sbjct: 166 NYNGLP---PPPPYHTNP 180
>TAIR9_protein||AT1G61080.1 | Symbols: | proline-rich family protein |
chr1:22493194-22497019 REVERSE
Length = 908
Score = 59 bits (140), Expect = 5e-009
Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Frame = +1
Query: 31 PPPGVPQMMAPPGGPLPPPPPQNGILRPPGLAPIPGQGGAPPP-------NYTGLPPPPP 189
PPP P + P PPPPP + PP P PG APPP PPPPP
Sbjct: 509 PPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPPPPPP 568
Query: 190 YHTNPTAAPPSVGFNNPNPGAESP 261
N +PP + N G P
Sbjct: 569 PMQNRAPSPPPMPMGNSGSGGPPP 592
>TAIR9_protein||AT4G13340.1 | Symbols: | leucine-rich repeat family protein /
extensin family protein | chr4:7758610-7760892 FORWARD
Length = 761
Score = 58 bits (138), Expect = 9e-009
Identities = 31/77 (40%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +1
Query: 31 PPPGVPQMMAPPGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYTGLPPPPPYHTNPTA 210
PPP P + +PP P PPPPP PP P P PPP Y+ PPPPP P
Sbjct: 456 PPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPP-----PPPVYSPPPPPPPPPPPPVY 510
Query: 211 APPSVGFNNPNPGAESP 261
+PP + P SP
Sbjct: 511 SPPPPPVYSSPPPPPSP 527
Score = 50 bits (119), Expect = 1e-006
Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 25 YMPPPGVPQMMAPPGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYTGLPPPPPYHTNP 204
Y PPP P PP PPPP + PP AP P PPP PPPP + P
Sbjct: 495 YSPPPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPPPHSPPPPQFSPPP 554
Query: 205 TAAPPSVGFNNPNPGAESP 261
P +++P P SP
Sbjct: 555 ---PEPYYYSSPPPPHSSP 570
>TAIR9_protein||AT4G20440.1 | Symbols: smB | smB (small nuclear
ribonucleoprotein associated protein B) | chr4:11022843-11023616
REVERSE
Length = 258
Score = 54 bits (128), Expect = 1e-007
Identities = 29/71 (40%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +1
Query: 46 PQMMAP----PGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYTGLPPPPPYHTNPTAA 213
PQ+ AP P G + PPPP G P G P P G PPP PPPP Y P
Sbjct: 151 PQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIP 210
Query: 214 PPSVGFNNPNP 246
PP P P
Sbjct: 211 PPGGMMRGPPP 221
>TAIR9_protein||AT4G20440.2 | Symbols: smB | smB (small nuclear
ribonucleoprotein associated protein B) | chr4:11022843-11023616
REVERSE
Length = 258
Score = 54 bits (128), Expect = 1e-007
Identities = 29/71 (40%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +1
Query: 46 PQMMAP----PGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYTGLPPPPPYHTNPTAA 213
PQ+ AP P G + PPPP G P G P P G PPP PPPP Y P
Sbjct: 151 PQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIP 210
Query: 214 PPSVGFNNPNP 246
PP P P
Sbjct: 211 PPGGMMRGPPP 221
>TAIR9_protein||AT4G20440.3 | Symbols: smB | smB (small nuclear
ribonucleoprotein associated protein B) | chr4:11022843-11023616
REVERSE
Length = 258
Score = 54 bits (128), Expect = 1e-007
Identities = 29/71 (40%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +1
Query: 46 PQMMAP----PGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYTGLPPPPPYHTNPTAA 213
PQ+ AP P G + PPPP G P G P P G PPP PPPP Y P
Sbjct: 151 PQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIP 210
Query: 214 PPSVGFNNPNP 246
PP P P
Sbjct: 211 PPGGMMRGPPP 221
>TAIR9_protein||AT4G20440.4 | Symbols: | smB (small nuclear ribonucleoprotein
associated protein B) | chr4:11022843-11023616 REVERSE
Length = 258
Score = 54 bits (128), Expect = 1e-007
Identities = 29/71 (40%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +1
Query: 46 PQMMAP----PGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYTGLPPPPPYHTNPTAA 213
PQ+ AP P G + PPPP G P G P P G PPP PPPP Y P
Sbjct: 151 PQLSAPPIIRPPGQMLPPPPFGGQGPPMGRGPPPPYGMRPPPQQFSGPPPPQYGQRPMIP 210
Query: 214 PPSVGFNNPNP 246
PP P P
Sbjct: 211 PPGGMMRGPPP 221
>TAIR9_protein||AT3G19320.1 | Symbols: | leucine-rich repeat family protein |
chr3:6696395-6698073 REVERSE
Length = 494
Score = 50 bits (119), Expect = 1e-006
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +1
Query: 19 TGYMPPPGVPQ------MMAPPGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYTGLPP 180
T Y P P+ + PP P PPPPPQ+ L PP +P P PP ++ P
Sbjct: 45 TNYNSPAPSPEPEDYLPLPPPPQTPPPPPPPQS--LPPPSPSPEPEHYPPPPYHHYITPS 102
Query: 181 PPPYHTNPTAAPPSVGFNNP 240
PPP P PP + F++P
Sbjct: 103 PPPPRPLPPPPPPPLHFSSP 122
>TAIR9_protein||AT1G26250.1 | Symbols: | proline-rich extensin, putative |
chr1:9083903-9085234 FORWARD
Length = 444
Score = 49 bits (115), Expect = 4e-006
Identities = 27/72 (37%), Positives = 29/72 (40%)
Frame = +1
Query: 31 PPPGVPQMMAPPGGPLPPPPPQNGILRPPGLAPIPGQGGAPPPNYTGLPPPPPYHTNPTA 210
PPP V PP PPP + PP P Q PPP PPPPPY
Sbjct: 142 PPPYVYSSPPPPPYVYKSPPPPPYVYSPPPPPPYVYQSPPPPPYVYSSPPPPPYVYKSPP 201
Query: 211 APPSVGFNNPNP 246
PP V + P P
Sbjct: 202 PPPYVYSSPPPP 213
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,040,491,591
Number of Sequences: 33410
Number of Extensions: 23040491591
Number of Successful Extensions: 733982417
Number of sequences better than 0.0: 0
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