BLASTX 7.6.2
Query= UN48510 /QuerySize=1185
(1184 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis ... 480 3e-133
gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis ... 472 5e-131
gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 ... 342 6e-092
gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT... 340 3e-091
gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein... 330 3e-088
gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT... 253 4e-065
gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabido... 244 2e-062
gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thal... 243 7e-062
gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast,... 195 2e-047
gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein... 185 2e-044
gi|255639723|gb|ACU20155.1| unknown [Glycine max] 178 2e-042
gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucl... 170 4e-040
gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucl... 168 2e-039
gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding... 165 1e-038
gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucle... 165 2e-038
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 480 bits (1234), Expect = 3e-133
Identities = 267/329 (81%), Positives = 284/329 (86%), Gaps = 21/329 (6%)
Frame = +1
Query: 31 MSASASPVSLSSFNPKSLLPLCVSR--SASVLPPSLSFKLPS---LSLFTSSALKSSSSP 195
MSASAS SLS+FNPKS LPLCVSR S SVLPPSLSFKL S +S+F SSALK SSP
Sbjct: 1 MSASAS--SLSAFNPKS-LPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALK-CSSP 56
Query: 196 AQYTSLFVTHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLA 375
A+Y S FV +VAVSSDFEVEEDDMFAD D P ER+SFS DLKLFVGNLSF+VDSAQLA
Sbjct: 57 AEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLA 116
Query: 376 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGP 555
QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS+AAE EAAAQQFNGYEFEGRPLRVNAGP
Sbjct: 117 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGP 176
Query: 556 PPPKREESFSRGPRSGGYGSER-SGYGSER---------SGYGSQRSGRSGYGSERSSY- 702
PPPKREESFSRGPRSGGYGSER GYGSER GYGSQRSG GS+RSSY
Sbjct: 177 PPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYG 236
Query: 703 -GSGSGSGSGSSDRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRETGRSKGFGFVT 879
GSGSGSGSGS +R+YVGNLSWGVDDMALE+LF+EQGKVVEARVIYDR++GRSKGFGFVT
Sbjct: 237 SGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVT 296
Query: 880 LGSPQEVTRAISSLNGADLDGRQIRVSEA 966
L S QEV +AI+SLNGADLDGRQIRVSEA
Sbjct: 297 LSSSQEVQKAINSLNGADLDGRQIRVSEA 325
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 472 bits (1214), Expect = 5e-131
Identities = 259/319 (81%), Positives = 276/319 (86%), Gaps = 19/319 (5%)
Frame = +1
Query: 61 SSFNPKSLLPLCVSR--SASVLPPSLSFKLPS---LSLFTSSALKSSSSPAQYTSLFVTH 225
S+FNPKS LPLCVSR S SVLPPSLSFKL S +S+F SSALK SSPA+Y S FV +
Sbjct: 1 SAFNPKS-LPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALK-CSSPAEYPSRFVRN 58
Query: 226 VAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESAGNVE 405
VAVSSDFEVEEDDMFAD D P ER+SFS DLKLFVGNLSF+VDSAQLAQLFESAGNVE
Sbjct: 59 VAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVE 118
Query: 406 MVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFS 585
MVEVIYDKVTGRSRGFGFVTMS+AAE EAAAQQFNGYEFEGRPLRVNAGPPPPKREESFS
Sbjct: 119 MVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFS 178
Query: 586 RGPRSGGYGSER-SGYGSER---------SGYGSQRSGRSGYGSERSSY--GSGSGSGSG 729
RGPRSGGYGSER GYGSER GYGSQRSG GS+RSSY GSGSGSGSG
Sbjct: 179 RGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSG 238
Query: 730 SSDRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRA 909
S +R+YVGNLSWGVDDMALE+LF+EQGKVVEARVIYDR++GRSKGFGFVTL S QEV +A
Sbjct: 239 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKA 298
Query: 910 ISSLNGADLDGRQIRVSEA 966
I+SLNGADLDGRQIRVSEA
Sbjct: 299 INSLNGADLDGRQIRVSEA 317
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis
thaliana]
Length = 342
Score = 342 bits (877), Expect = 6e-092
Identities = 199/251 (79%), Positives = 209/251 (83%), Gaps = 15/251 (5%)
Frame = +1
Query: 31 MSASASPVSLSSFNPKSLLPLCVSR--SASVLPPSLSFKLPS---LSLFTSSALKSSSSP 195
MSASAS SLS+FNPKS LPLCVSR S SVLPPSLSFKL S +S+F SSALK SSP
Sbjct: 1 MSASAS--SLSAFNPKS-LPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALK-CSSP 56
Query: 196 AQYTSLFVTHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLA 375
A+Y S FV +VAVSSDFEVEEDDMFAD D P ER+SFS DLKLFVGNLSF+VDSAQLA
Sbjct: 57 AEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLA 116
Query: 376 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGP 555
QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS+AAE EAAAQQFNGYEFEGRPLRVNAGP
Sbjct: 117 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGP 176
Query: 556 PPPKREESFSRGPRSGGYGSER-SGYGSER-SGYGSQRSGRSGYGSER-SSYGS-GSGSG 723
PPPKREESFSRGPRSGGYGSER GYGSER GYGS+R G GYGSER YGS SG G
Sbjct: 177 PPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGG--GYGSERGGGYGSQRSGGG 234
Query: 724 SGSSDRVYVGN 756
G S R G+
Sbjct: 235 YGGSQRSSYGS 245
Score = 196 bits (496), Expect = 1e-047
Identities = 104/128 (81%), Positives = 113/128 (88%), Gaps = 4/128 (3%)
Frame = +1
Query: 595 RSGGYGSER-SGYGSER-SGYGSQRSGRSGYGSERSSY--GSGSGSGSGSSDRVYVGNLS 762
R GGYGSER GYGSER GYGSQRSG GS+RSSY GSGSGSGSGS +R+YVGNLS
Sbjct: 206 RGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLS 265
Query: 763 WGVDDMALESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDG 942
WGVDDMALE+LF+EQGKVVEARVIYDR++GRSKGFGFVTL S QEV +AI+SLNGADLDG
Sbjct: 266 WGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDG 325
Query: 943 RQIRVSEA 966
RQIRVSEA
Sbjct: 326 RQIRVSEA 333
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440
[Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 340 bits (871), Expect = 3e-091
Identities = 196/250 (78%), Positives = 206/250 (82%), Gaps = 14/250 (5%)
Frame = +1
Query: 31 MSASASPVSLSSFNPKSLLPLCVSR--SASVLPPSLSFKLPS---LSLFTSSALKSSSSP 195
MSASAS SLS+FNPKS LPLCVSR S SVLPPSLSFKL S +SLF SSA+K SSP
Sbjct: 1 MSASAS--SLSAFNPKS-LPLCVSRPASVSVLPPSLSFKLHSDHIVSLFASSAVK-CSSP 56
Query: 196 AQYTSLFVTHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLA 375
A+Y FV +VAVSSDFEVEEDDMFAD D P ER+SFS DLKLFVGNLSF+VDSAQLA
Sbjct: 57 AEYPLRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLA 116
Query: 376 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGP 555
QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS+AAE EAAAQQFNGYEFEGRPLRVNAGP
Sbjct: 117 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGP 176
Query: 556 PPPKREESFSRGPRSGGYGSER-SGYGSER-SGYGSQRSGRSGYGSER-SSYGSGSGSGS 726
PPPKREESFSRGPRSGGYGSER GYGSER GYGS+R G GYGSER YGS G
Sbjct: 177 PPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGG--GYGSERGGGYGSQRSGGY 234
Query: 727 GSSDRVYVGN 756
G S R G+
Sbjct: 235 GGSQRSSYGS 244
Score = 200 bits (507), Expect = 5e-049
Identities = 105/126 (83%), Positives = 114/126 (90%), Gaps = 3/126 (2%)
Frame = +1
Query: 595 RSGGYGSER-SGYGSER-SGYGSQRSGRSGYGSERSSYGSGSGSGSGSSDRVYVGNLSWG 768
R GGYGSER GYGSER GYGSQRSG G GS+RSSYGSGSGSGSGS +R+YVGNLSWG
Sbjct: 206 RGGGYGSERGGGYGSERGGGYGSQRSGGYG-GSQRSSYGSGSGSGSGSGNRLYVGNLSWG 264
Query: 769 VDDMALESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDGRQ 948
VDDMALE+LF+EQGKVVEARVIYDR++GRSKGFGFVTL S QEV +AI+SLNGADLDGRQ
Sbjct: 265 VDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQ 324
Query: 949 IRVSEA 966
IRVSEA
Sbjct: 325 IRVSEA 330
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29
[Arabidopsis thaliana]
Length = 363
Score = 330 bits (845), Expect = 3e-088
Identities = 199/272 (73%), Positives = 209/272 (76%), Gaps = 36/272 (13%)
Frame = +1
Query: 31 MSASASPVSLSSFNPKSLLPLCVSR--SASVLPPSLSFKLPS---LSLFTSSALKSSSSP 195
MSASAS SLS+FNPKS LPLCVSR S SVLPPSLSFKL S +S+F SSALK SSP
Sbjct: 1 MSASAS--SLSAFNPKS-LPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALK-CSSP 56
Query: 196 AQYTSLFVTHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLA 375
A+Y S FV +VAVSSDFEVEEDDMFAD D P ER+SFS DLKLFVGNLSF+VDSAQLA
Sbjct: 57 AEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLA 116
Query: 376 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGY------------- 516
QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS+AAE EAAAQQFNGY
Sbjct: 117 QLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYL 176
Query: 517 --------EFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSER-SGYGSER-SGYGSQRS 666
EFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSER GYGSER GYGS+R
Sbjct: 177 LIRVLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERG 236
Query: 667 GRSGYGSER-SSYGS-GSGSGSGSSDRVYVGN 756
G GYGSER YGS SG G G S R G+
Sbjct: 237 G--GYGSERGGGYGSQRSGGGYGGSQRSSYGS 266
Score = 196 bits (496), Expect = 1e-047
Identities = 104/128 (81%), Positives = 113/128 (88%), Gaps = 4/128 (3%)
Frame = +1
Query: 595 RSGGYGSER-SGYGSER-SGYGSQRSGRSGYGSERSSY--GSGSGSGSGSSDRVYVGNLS 762
R GGYGSER GYGSER GYGSQRSG GS+RSSY GSGSGSGSGS +R+YVGNLS
Sbjct: 227 RGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLS 286
Query: 763 WGVDDMALESLFSEQGKVVEARVIYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDG 942
WGVDDMALE+LF+EQGKVVEARVIYDR++GRSKGFGFVTL S QEV +AI+SLNGADLDG
Sbjct: 287 WGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDG 346
Query: 943 RQIRVSEA 966
RQIRVSEA
Sbjct: 347 RQIRVSEA 354
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714
[Arabidopsis lyrata subsp. lyrata]
Length = 289
Score = 253 bits (646), Expect = 4e-065
Identities = 151/219 (68%), Positives = 167/219 (76%), Gaps = 21/219 (9%)
Frame = +1
Query: 52 VSLSSFNPKSLLPLCVSRSASV--LPPSLSFKLPSLSLFTSSALKSSSSPAQYTSLFVTH 225
++LSSFNPKS LP CVSR ASV LPPSLSFKL S S+ S A K +SPA S FV +
Sbjct: 8 LALSSFNPKS-LPFCVSRPASVSLLPPSLSFKLNSDSVSFSIAAK-WNSPA---SRFVRN 62
Query: 226 VAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESAGNVE 405
VA++S+FEVEED FADD +P ++ SFSADLKLFVGNL F+VDSAQLAQLFESAGNVE
Sbjct: 63 VAITSEFEVEEDG-FADDAAP---QQQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVE 118
Query: 406 MVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFS 585
MVEVIYDKVTGRSRGFGFVTMSS +E EAAA QFNGYE +GRPLRVNAGPPPPKRE+ FS
Sbjct: 119 MVEVIYDKVTGRSRGFGFVTMSSVSEVEAAANQFNGYELDGRPLRVNAGPPPPKREDGFS 178
Query: 586 RGPRSGGYGSERSGYGSERSGYGSQRSGRSGYGSERSSY 702
RGPRS +GS SGYG G SG GS Y
Sbjct: 179 RGPRS-SFGSSGSGYGG---------GGGSGAGSGNRVY 207
Score = 164 bits (415), Expect = 2e-038
Identities = 82/105 (78%), Positives = 89/105 (84%)
Frame = +1
Query: 652 GSQRSGRSGYGSERSSYGSGSGSGSGSSDRVYVGNLSWGVDDMALESLFSEQGKVVEARV 831
G R RS +GS S YG G GSG+GS +RVYVGNLSWGVDDMALESLF+EQGKVVEARV
Sbjct: 176 GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFAEQGKVVEARV 235
Query: 832 IYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDGRQIRVSEA 966
IYDR++GRSKGFGFVT S QEV AI+SLNGADLDGRQIRVSEA
Sbjct: 236 IYDRDSGRSKGFGFVTYNSSQEVQNAINSLNGADLDGRQIRVSEA 280
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 244 bits (622), Expect = 2e-062
Identities = 150/219 (68%), Positives = 166/219 (75%), Gaps = 21/219 (9%)
Frame = +1
Query: 52 VSLSSFNPKSLLPLCVSRSASV--LPPSLSFKLPSLSLFTSSALKSSSSPAQYTSLFVTH 225
++LSSFNPKS LP VSR ASV L PSLSFKL S S+ S A K +SPA S FV +
Sbjct: 8 LALSSFNPKS-LPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAK-WNSPA---SRFVRN 62
Query: 226 VAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESAGNVE 405
VA++S+FEVEED FA D PP+E+ SFSADLKLFVGNL F+VDSAQLAQLFESAGNVE
Sbjct: 63 VAITSEFEVEEDG-FA--DVAPPKEQ-SFSADLKLFVGNLPFNVDSAQLAQLFESAGNVE 118
Query: 406 MVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFS 585
MVEVIYDK+TGRSRGFGFVTMSS +E EAAAQQFNGYE +GRPLRVNAGPPPPKRE+ FS
Sbjct: 119 MVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS 178
Query: 586 RGPRSGGYGSERSGYGSERSGYGSQRSGRSGYGSERSSY 702
RGPRS +GS SGYG G SG GS Y
Sbjct: 179 RGPRS-SFGSSGSGYGG---------GGGSGAGSGNRVY 207
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 243 bits (618), Expect = 7e-062
Identities = 149/219 (68%), Positives = 165/219 (75%), Gaps = 21/219 (9%)
Frame = +1
Query: 52 VSLSSFNPKSLLPLCVSRSASV--LPPSLSFKLPSLSLFTSSALKSSSSPAQYTSLFVTH 225
++LSSFNPKS LP VSR ASV L PSLSFKL S S+ S A K +SPA S F +
Sbjct: 8 LALSSFNPKS-LPFGVSRPASVSLLSPSLSFKLNSDSVSFSIAAK-WNSPA---SRFARN 62
Query: 226 VAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESAGNVE 405
VA++S+FEVEED FA D PP+E+ SFSADLKLFVGNL F+VDSAQLAQLFESAGNVE
Sbjct: 63 VAITSEFEVEEDG-FA--DVAPPKEQ-SFSADLKLFVGNLPFNVDSAQLAQLFESAGNVE 118
Query: 406 MVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFS 585
MVEVIYDK+TGRSRGFGFVTMSS +E EAAAQQFNGYE +GRPLRVNAGPPPPKRE+ FS
Sbjct: 119 MVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS 178
Query: 586 RGPRSGGYGSERSGYGSERSGYGSQRSGRSGYGSERSSY 702
RGPRS +GS SGYG G SG GS Y
Sbjct: 179 RGPRS-SFGSSGSGYGG---------GGGSGAGSGNRVY 207
Score = 163 bits (411), Expect = 7e-038
Identities = 82/105 (78%), Positives = 88/105 (83%)
Frame = +1
Query: 652 GSQRSGRSGYGSERSSYGSGSGSGSGSSDRVYVGNLSWGVDDMALESLFSEQGKVVEARV 831
G R RS +GS S YG G GSG+GS +RVYVGNLSWGVDDMALESLFSEQGKVVEARV
Sbjct: 176 GFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARV 235
Query: 832 IYDRETGRSKGFGFVTLGSPQEVTRAISSLNGADLDGRQIRVSEA 966
IYDR++GRSKGFGFVT S QEV AI SL+GADLDGRQIRVSEA
Sbjct: 236 IYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative
[Ricinus communis]
Length = 280
Score = 195 bits (493), Expect = 2e-047
Identities = 120/190 (63%), Positives = 134/190 (70%), Gaps = 18/190 (9%)
Frame = +1
Query: 58 LSSFNPKSLLPLCVSRSASVLPPSLSFKLPSLSLFTSSALKSSSSPAQY-----TSLFVT 222
L S NPK+ L LC P SLSFKL + + S+L SS P Q +S FV
Sbjct: 11 LPSLNPKT-LSLCNPNK----PISLSFKLHAKPISIPSSLFSSFVPLQQQPYSSSSRFVP 65
Query: 223 HVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESAGNV 402
VA+SS+F +E+D+ +D D SSFS DLKLFVGNL F+VDSAQLA LFESAGNV
Sbjct: 66 SVAISSEFG-QEEDVSSDGD------ESSFSQDLKLFVGNLPFNVDSAQLAGLFESAGNV 118
Query: 403 EMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKREESF 582
EMVEVIYDKVTGRSRGFGFVTMSS E EAAAQQFNGYE EGR LRVN+G PPP+RE SF
Sbjct: 119 EMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSG-PPPQRESSF 177
Query: 583 SRGPRSGGYG 612
SR PR GG G
Sbjct: 178 SRSPRFGGGG 187
>gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 288
Score = 185 bits (468), Expect = 2e-044
Identities = 113/209 (54%), Positives = 135/209 (64%), Gaps = 12/209 (5%)
Frame = +1
Query: 73 PKSLLP--LCVSRSASVLPPSLSFKLPSLSLFTSSALKSSSSPAQYT--SLFVTHVAVSS 240
P LP L +S+ SV SL F SL L ++S S SS T S FV +VAVSS
Sbjct: 10 PSLSLPKTLAISKPTSVSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLSSRFVRNVAVSS 69
Query: 241 DFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESAGNVEMVEVI 420
D+E +++D+ +D+ P SFS DLKLFVGNL F+VDSA LA LFE AGNVEMVEVI
Sbjct: 70 DYE-QDEDVLSDEGEP------SFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVI 122
Query: 421 YDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRS 600
YDK+TGRSRGFGFVTMS+ E EAAAQQFNGYE EGR LRVN+GPPP +RE S RG S
Sbjct: 123 YDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENSNFRGENS 182
Query: 601 GGYGSERSGYGSERSGYGSQRSGRSGYGS 687
+ E + + R G + R G+
Sbjct: 183 -NFRGENTNFRGPRGGANLNSTNRIYVGN 210
>gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 178 bits (451), Expect = 2e-042
Identities = 104/180 (57%), Positives = 120/180 (66%), Gaps = 14/180 (7%)
Frame = +1
Query: 88 PLCVSRSASVLPPSLSFKLPSLSLFTSSALKSSSSPAQYTSLFVTHVAVSSDFEVEEDDM 267
P C S S S+ P S + ++ L T+ SSSSP +S FV HV+V +E+D
Sbjct: 24 PQCFSSSLSLTPNSKPISISAVFLKTT---LSSSSPLSLSSRFVPHVSVLE----QEEDT 76
Query: 268 FADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESAGNVEMVEVIYDKVTGRSR 447
F D D P SFS DLKLFVGNL F VDSA+LA+LFESAGNVE+VEVIYDK TGRSR
Sbjct: 77 FGDGDGP------SFSRDLKLFVGNLPFSVDSARLAELFESAGNVEVVEVIYDKTTGRSR 130
Query: 448 GFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERSG 627
GFGFVTMSS EAEAAA+QFNGYE +GR LRVN+G PPP R ES R +GS G
Sbjct: 131 GFGFVTMSSVEEAEAAAKQFNGYELDGRSLRVNSG-PPPARNESAPRFRGGSSFGSRGGG 189
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B,
chloroplastic; AltName: Full=CP29B; Flags: Precursor
Length = 291
Score = 170 bits (430), Expect = 4e-040
Identities = 106/195 (54%), Positives = 120/195 (61%), Gaps = 16/195 (8%)
Frame = +1
Query: 136 FKLP--SLSLFTSSALKSSSSPAQYTSLFVTHVAVSSDFEVEEDDMFADDDSPPPQERSS 309
F LP SL+L SS+ S + S F T VA+S ++E+D A E+
Sbjct: 31 FSLPSSSLNLSLSSSSTGLCSIKPFESSFSTRVALSGFDQLEDDVEVA--------EQPR 82
Query: 310 FSADLKLFVGNLSFDVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAE 489
FS DLKLFVGNL F VDSA LA LFE AGNVEMVEVIYDK+TGRSRGFGFVTMS+ E E
Sbjct: 83 FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVE 142
Query: 490 AAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSG--GYGSERSGYGSERSGYGSQR 663
AA QQFNGYE +GR +RVNAGP P KRE S G R G YG R G S +G R
Sbjct: 143 AAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDG----NSSFGGAR 198
Query: 664 SGRSGYGSERSSYGS 708
GRS S R G+
Sbjct: 199 GGRSVDSSNRVYVGN 213
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,
chloroplastic; AltName: Full=CP29A; Flags: Precursor
Length = 273
Score = 168 bits (424), Expect = 2e-039
Identities = 99/175 (56%), Positives = 117/175 (66%), Gaps = 9/175 (5%)
Frame = +1
Query: 97 VSRSASVLP-PSLSFKLPSLSLF----TSSALKSSSSPAQYTSLFVTHVAVSSDFEVEED 261
+S + LP P + + SLS F +S L SSS + ++S FV V + SDF+ ED
Sbjct: 11 LSLTPQTLPLPKPTSQTTSLSFFSLPPSSLNLSLSSSSSCFSSRFVRKVTL-SDFDQIED 69
Query: 262 DMFADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESAGNVEMVEVIYDKVTGR 441
+D +E +FS DLK+FVGNL F DSA LA+LFE AGNVEMVEVIYDK+TGR
Sbjct: 70 ---VEDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGR 126
Query: 442 SRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGG 606
SRGFGFVTMSS E EAA QQFNGYE +GR LRVN+GPPP KRE S RG GG
Sbjct: 127 SRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGG 181
>gi|17432522|gb|AAL39067.1|AF389431_1 single-stranded DNA binding protein
precursor [Solanum tuberosum]
Length = 289
Score = 165 bits (417), Expect = 1e-038
Identities = 103/205 (50%), Positives = 130/205 (63%), Gaps = 20/205 (9%)
Frame = +1
Query: 31 MSASASPVSLSSFNPKSLLPLCVSRSASVLPPSLSFKLPSLSLFTSSALKSSSSPAQY-T 207
M++S+S + S P++ LP S++ S+ F LP SL + +L SSS+P + +
Sbjct: 1 MASSSSSLHFLSLTPQT-LPKPTSQTTSI----SFFSLPPSSL--NLSLSSSSTPRNFES 53
Query: 208 SLFVTHVAVSSDFEVEEDDMFADD-------DSPPPQERSSFSADLKLFVGNLSFDVDSA 366
S FV V +S ++EE + DD D E + + DLK+FVGNL F VDSA
Sbjct: 54 SRFVRKVTLSDFDQIEEVEAGDDDEEEGGLSDEGASYEERNANPDLKIFVGNLPFSVDSA 113
Query: 367 QLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVN 546
LA+LFE AG+VEMVEVIYDK+TGRSRGFGFVTMSS EAA QQFNGYE +GR LRVN
Sbjct: 114 ALAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEAACQQFNGYEIDGRALRVN 173
Query: 547 AGPPPPKREESFS-----RGPRSGG 606
+GP PPKRE SF +G R GG
Sbjct: 174 SGPAPPKRENSFGDNSSYQGGRGGG 198
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP31; Flags: Precursor
Length = 292
Score = 165 bits (416), Expect = 2e-038
Identities = 107/208 (51%), Positives = 124/208 (59%), Gaps = 14/208 (6%)
Frame = +1
Query: 100 SRSASVLPPSLS---FKLPSLSLFTSSALKSSSSPAQYTSLFVTHVAVSSDFEVEEDDMF 270
S++ S L P+ + F LPS SL S SSSS S+ + S+ + + D
Sbjct: 16 SQTPSSLKPNSTLSFFSLPSSSLNLS---LSSSSIGHSASIKPFESSFSTRVALSDFDQL 72
Query: 271 ADDDSPPPQERSSFSADLKLFVGNLSFDVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRG 450
DD Q R FS DLKLFVGNL F VDSA LA LFE AGNVE+VEVIYDK++GRSRG
Sbjct: 73 EDDVEVAEQPR--FSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRG 130
Query: 451 FGFVTMSSAAEAEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSG--GYGSERS 624
FGFVTMS+ E EAA QQFNGYE +GR +RVNAGP P KRE S G R G YG R
Sbjct: 131 FGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRD 190
Query: 625 GYGSERSGYGSQRSGRSGYGSERSSYGS 708
G S +G R GRS S R G+
Sbjct: 191 G----NSSFGGARGGRSVDSSNRVYVGN 214
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,261,706,102,847
Number of Sequences: 15229318
Number of Extensions: 5261706102847
Number of Successful Extensions: 1224141854
Number of sequences better than 0.0: 0
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