BLASTX 7.6.2
Query= UN48547 /QuerySize=507
(506 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|167391796|ref|YP_001671674.1| RNA polymerase beta' subunit [C... 154 4e-036
gi|133440|sp|P12116.1|RPOC1_TOBAC RecName: Full=DNA-directed RNA... 154 5e-036
gi|225280|prf||1211235Q rpoC-like ORF 548 154 5e-036
gi|7525024|ref|NP_051050.1| RNA polymerase beta' subunit [Arabid... 154 5e-036
gi|11497515|ref|NP_054923.1| RNA polymerase beta' subunit [Spina... 154 5e-036
gi|11465945|ref|NP_054487.1| RNA polymerase beta' subunit [Nicot... 154 5e-036
gi|20068322|emb|CAC88035.1| RNA polymerase beta I subunit [Atrop... 154 5e-036
gi|12644278|sp|P46819.2|RPOC1_SINAL RecName: Full=DNA-directed R... 154 5e-036
gi|200003947|ref|NP_783223.2| RNA polymerase beta' subunit [Atro... 154 5e-036
gi|75755650|ref|YP_319756.1| RNA polymerase beta' subunit [Acoru... 154 5e-036
gi|80750912|dbj|BAE47988.1| RNA polymerase beta' subunit [Nicoti... 154 5e-036
gi|89280626|ref|YP_514843.1| RNA polymerase beta' subunit [Solan... 154 5e-036
gi|69216888|gb|AAZ03985.1| RNA polymerase beta' chain [Acorus am... 154 5e-036
gi|82754620|gb|ABB90034.1| RNA polymerase beta I chain [Solanum ... 154 5e-036
gi|91208893|ref|YP_538926.1| RNA polymerase beta' subunit [Gossy... 154 5e-036
gi|52220801|ref|YP_086957.1| RNA polymerase beta' subunit [Panax... 154 5e-036
gi|56122474|gb|AAV74362.1| RpoC1 [Acorus gramineus] 154 5e-036
gi|90111003|sp|Q2VEI5.2|RPOC1_SOLTU RecName: Full=DNA-directed R... 154 5e-036
gi|90111000|sp|Q68S15.2|RPOC1_PANGI RecName: Full=DNA-directed R... 154 5e-036
gi|90110998|sp|Q3C1G8.2|RPOC1_NICSY RecName: Full=DNA-directed R... 154 5e-036
>gi|167391796|ref|YP_001671674.1| RNA polymerase beta' subunit [Carica papaya]
Length = 680
Score = 154 bits (389), Expect = 4e-036
Identities = 78/86 (90%), Positives = 79/86 (91%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 345 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 404
Query: 326 LFQTFVIRGLIRQHLA*TSSGLKIKL 249
LFQTFVIRGLIRQHLA K K+
Sbjct: 405 LFQTFVIRGLIRQHLASNMGVAKSKI 430
>gi|133440|sp|P12116.1|RPOC1_TOBAC RecName: Full=DNA-directed RNA polymerase
subunit beta'; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta'; Short=RNA polymerase subunit beta'
Length = 680
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 344 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 403
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 404 LFQTFVIRGLIRQHLA 419
>gi|225280|prf||1211235Q rpoC-like ORF 548
Length = 548
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 212 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 271
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 272 LFQTFVIRGLIRQHLA 287
>gi|7525024|ref|NP_051050.1| RNA polymerase beta' subunit [Arabidopsis
thaliana]
Length = 680
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 345 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 404
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 405 LFQTFVIRGLIRQHLA 420
>gi|11497515|ref|NP_054923.1| RNA polymerase beta' subunit [Spinacia oleracea]
Length = 677
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 345 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 404
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 405 LFQTFVIRGLIRQHLA 420
>gi|11465945|ref|NP_054487.1| RNA polymerase beta' subunit [Nicotiana tabacum]
Length = 688
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 352 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 411
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 412 LFQTFVIRGLIRQHLA 427
>gi|20068322|emb|CAC88035.1| RNA polymerase beta I subunit [Atropa belladonna]
Length = 688
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 352 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 411
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 412 LFQTFVIRGLIRQHLA 427
>gi|12644278|sp|P46819.2|RPOC1_SINAL RecName: Full=DNA-directed RNA polymerase
subunit beta'; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta'; Short=RNA polymerase subunit beta'
Length = 688
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 353 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 412
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 413 LFQTFVIRGLIRQHLA 428
>gi|200003947|ref|NP_783223.2| RNA polymerase beta' subunit [Atropa belladonna]
Length = 681
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 345 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 404
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 405 LFQTFVIRGLIRQHLA 420
>gi|75755650|ref|YP_319756.1| RNA polymerase beta' subunit [Acorus calamus]
Length = 682
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 345 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 404
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 405 LFQTFVIRGLIRQHLA 420
>gi|80750912|dbj|BAE47988.1| RNA polymerase beta' subunit [Nicotiana
tomentosiformis]
Length = 688
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 352 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 411
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 412 LFQTFVIRGLIRQHLA 427
>gi|89280626|ref|YP_514843.1| RNA polymerase beta' subunit [Solanum
lycopersicum]
Length = 688
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 352 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 411
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 412 LFQTFVIRGLIRQHLA 427
>gi|69216888|gb|AAZ03985.1| RNA polymerase beta' chain [Acorus americanus]
Length = 696
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 359 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 418
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 419 LFQTFVIRGLIRQHLA 434
>gi|82754620|gb|ABB90034.1| RNA polymerase beta I chain [Solanum tuberosum]
Length = 694
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 358 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 417
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 418 LFQTFVIRGLIRQHLA 433
>gi|91208893|ref|YP_538926.1| RNA polymerase beta' subunit [Gossypium hirsutum]
Length = 685
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 345 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 404
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 405 LFQTFVIRGLIRQHLA 420
>gi|52220801|ref|YP_086957.1| RNA polymerase beta' subunit [Panax ginseng]
Length = 689
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 352 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 411
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 412 LFQTFVIRGLIRQHLA 427
>gi|56122474|gb|AAV74362.1| RpoC1 [Acorus gramineus]
Length = 689
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 352 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 411
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 412 LFQTFVIRGLIRQHLA 427
>gi|90111003|sp|Q2VEI5.2|RPOC1_SOLTU RecName: Full=DNA-directed RNA polymerase
subunit beta'; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta'; Short=RNA polymerase subunit beta'
Length = 687
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 351 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 410
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 411 LFQTFVIRGLIRQHLA 426
>gi|90111000|sp|Q68S15.2|RPOC1_PANGI RecName: Full=DNA-directed RNA polymerase
subunit beta'; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta'; Short=RNA polymerase subunit beta'
Length = 682
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 345 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 404
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 405 LFQTFVIRGLIRQHLA 420
>gi|90110998|sp|Q3C1G8.2|RPOC1_NICSY RecName: Full=DNA-directed RNA polymerase
subunit beta'; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA
polymerase subunit beta'; Short=RNA polymerase subunit beta'
Length = 681
Score = 154 bits (388), Expect = 5e-036
Identities = 76/76 (100%)
Frame = -1
Query: 506 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 327
MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE
Sbjct: 345 MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIE 404
Query: 326 LFQTFVIRGLIRQHLA 279
LFQTFVIRGLIRQHLA
Sbjct: 405 LFQTFVIRGLIRQHLA 420
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,261,706,102,847
Number of Sequences: 15229318
Number of Extensions: 5261706102847
Number of Successful Extensions: 1224141854
Number of sequences better than 0.0: 0
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