BLASTX 7.6.2
Query= UN48781 /QuerySize=1109
(1108 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabi... 453 2e-125
gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis ... 433 3e-119
gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis ... 431 9e-119
gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT... 401 2e-109
gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B... 373 3e-101
gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thal... 367 3e-099
gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thal... 367 3e-099
gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabid... 365 8e-099
gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thali... 362 5e-098
gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vini... 336 5e-090
gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast,... 334 2e-089
gi|225452270|ref|XP_002270233.1| PREDICTED: hypothetical protein... 332 1e-088
gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Perse... 329 9e-088
gi|224119514|ref|XP_002318093.1| predicted protein [Populus tric... 329 9e-088
gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Me... 327 3e-087
gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum c... 327 3e-087
gi|224133740|ref|XP_002321649.1| predicted protein [Populus tric... 325 1e-086
gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vini... 323 5e-086
gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 ... 320 3e-085
gi|225456840|ref|XP_002278832.1| PREDICTED: hypothetical protein... 320 3e-085
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata
subsp. lyrata]
Length = 305
Score = 453 bits (1165), Expect = 2e-125
Identities = 249/308 (80%), Positives = 260/308 (84%), Gaps = 11/308 (3%)
Frame = +3
Query: 18 SHTSSSAMASSIVTSSFKPLAMADSSSSTIFSHPSLSTISSRCSFLSGRTNLPLS---FS 188
S +SS ++ SS + S SSTI S S S L+G NLPLS FS
Sbjct: 4 SIVTSSLKPLAMADSSSSTIFSHPSISSTI---SSSRIRCSNVSLLTGHINLPLSFSRFS 60
Query: 189 RVSLSLKAKTNLKKSPFVSFVAQTSDWDAEEGGDVSASVAVEENEP--EATFSEGDVGEG 362
R SLSLK+KT+LKKSPFVSFVAQTSDW AEEGG+ SVAVEENE E+ +EGDV EG
Sbjct: 61 RFSLSLKSKTHLKKSPFVSFVAQTSDW-AEEGGE--GSVAVEENEDSFESQDAEGDVSEG 117
Query: 363 GDFPEPLEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMST 542
+FPEP EEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMST
Sbjct: 118 AEFPEPSEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMST 177
Query: 543 VEEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRL 722
VEEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER PRVYEPAFRVYVGNLPWDVDNGRL
Sbjct: 178 VEEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRL 237
Query: 723 EQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRVNVA 902
EQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNE ELNDAIAALDGQNMEGRAIRVNVA
Sbjct: 238 EQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNENELNDAIAALDGQNMEGRAIRVNVA 297
Query: 903 EERPRRGF 926
EERPRRGF
Sbjct: 298 EERPRRGF 305
>gi|681906|dbj|BAA06520.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 314
Score = 433 bits (1112), Expect = 3e-119
Identities = 241/314 (76%), Positives = 258/314 (82%), Gaps = 20/314 (6%)
Frame = +3
Query: 27 SSSAMASSIVTSSFKPLAMADSSSSTIFSHPSLSTISSRCSFLSGRTNLPLSFSRVSLSL 206
+SS ++ SS + S SSTI S SS S L+GR NLPLSFSRVSLSL
Sbjct: 7 TSSLKPLAMADSSSSTIFSHPSISSTI---SSSRIRSSSVSLLTGRINLPLSFSRVSLSL 63
Query: 207 KAKTNLKKSPFVSFVAQTSDWDAEEGGDVSASVAVEENE--------PEATFSEGDVGEG 362
K KT+LKKSPFVSFVAQTSDW AEEGG+ SVAVEE E E SEGDV EG
Sbjct: 64 KTKTHLKKSPFVSFVAQTSDW-AEEGGE--GSVAVEETENSLESQDVSEGDESEGDVSEG 120
Query: 363 -----GDFPEPLEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGF 527
+FPEP EEAKLFVGNLAYDV+SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGF
Sbjct: 121 AVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGF 180
Query: 528 VTMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDV 707
VTMS+V+EAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER PRVYEPAFRVYVGNLPWDV
Sbjct: 181 VTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDV 240
Query: 708 DNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNETELNDAIAALDGQNMEGRAI 887
DNGRLEQ+FSEHGKVVEARVVYDRETGRSRGFGFVTMS+ ELN+AI+ALDGQN+EGRAI
Sbjct: 241 DNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAI 300
Query: 888 RVNVAEER-PRRGF 926
RVNVAEER PRRG+
Sbjct: 301 RVNVAEERPPRRGY 314
>gi|681908|dbj|BAA06521.1| RNA-binding protein cp31 [Arabidopsis thaliana]
Length = 304
Score = 431 bits (1108), Expect = 9e-119
Identities = 239/307 (77%), Positives = 255/307 (83%), Gaps = 20/307 (6%)
Frame = +3
Query: 48 SIVTSSFKPLAMADSSSSTIFSHPSLSTISSRCSFLSGRTNLPLSFSRVSLSLKAKTNLK 227
++ SS + S SSTI S SS S L+GR NLPLSFSRVSLSLK KT+LK
Sbjct: 4 AMADSSSSTIFSHPSISSTI---SSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLK 60
Query: 228 KSPFVSFVAQTSDWDAEEGGDVSASVAVEENE--------PEATFSEGDVGEG-----GD 368
KSPFVSFVAQTSDW AEEGG+ SVAVEE E E SEGDV EG +
Sbjct: 61 KSPFVSFVAQTSDW-AEEGGE--GSVAVEETENSLESQDVSEGDESEGDVSEGAVSERAE 117
Query: 369 FPEPLEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVE 548
FPEP EEAKLFVGNLAYDV+SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMS+V+
Sbjct: 118 FPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVD 177
Query: 549 EAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRLEQ 728
EAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER PRVYEPAFRVYVGNLPWDVDNGRLEQ
Sbjct: 178 EAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQ 237
Query: 729 VFSEHGKVVEARVVYDRETGRSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRVNVAEE 908
+FSEHGKVVEARVVYDRETGRSRGFGFVTMS+ ELN+AI+ALDGQN+EGRAIRVNVAEE
Sbjct: 238 LFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 297
Query: 909 R-PRRGF 926
R PRRG+
Sbjct: 298 RPPRRGY 304
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033
[Arabidopsis lyrata subsp. lyrata]
Length = 291
Score = 401 bits (1028), Expect = 2e-109
Identities = 213/291 (73%), Positives = 240/291 (82%), Gaps = 5/291 (1%)
Frame = +3
Query: 54 VTSSFKPLAMADSSSSTIFSHPSLSTISSRCSFLSGRTNLPLSFSRVSLSLKAKTNLKKS 233
+TSS K LA+A+SSSST+F PS+STISS S +LP + LSLK+KT S
Sbjct: 6 LTSSLKLLAVANSSSSTLFCLPSISTISSSKPHHS-NFSLPPRPINLPLSLKSKTLRNSS 64
Query: 234 PFVSFVAQTSDWDAEEGGDVSASVAVEENEPEATFSEGDVGEGGDFPEPLEEAKLFVGNL 413
P V+FV+QTSDW EE G+ S+ + +F D +GG FPEP EEAKLFVGNL
Sbjct: 65 PIVTFVSQTSDWPEEEEGE-DGSIGGTSVTVDESF---DTEDGGKFPEPPEEAKLFVGNL 120
Query: 414 AYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLN 593
YDVDSQALAMLFEQAGTVEI+EVIYNR+TDQSRGFGFVTMSTVEEA+ AVEKFNRY++N
Sbjct: 121 PYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAKKAVEKFNRYEVN 180
Query: 594 GRLLTVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVY 773
GRLLTVN AAPRGSRPERQPR Y+ AFR+YVGNLPWDVDN RL+QVFSEHGKVV+ARVVY
Sbjct: 181 GRLLTVNIAAPRGSRPERQPRQYDAAFRIYVGNLPWDVDNDRLQQVFSEHGKVVDARVVY 240
Query: 774 DRETGRSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRVNVAEERPRRGF 926
DRETGRSRGFGFVTMSNE E+NDAIAALDGQN+EGRAI+VNVAEERPRRGF
Sbjct: 241 DRETGRSRGFGFVTMSNENEVNDAIAALDGQNLEGRAIKVNVAEERPRRGF 291
>gi|15240641|ref|NP_199836.1| chloroplast RNA-binding protein 31B [Arabidopsis
thaliana]
Length = 289
Score = 373 bits (957), Expect = 3e-101
Identities = 204/291 (70%), Positives = 231/291 (79%), Gaps = 9/291 (3%)
Frame = +3
Query: 54 VTSSFKPLAMADSSSSTIFSHPSLSTISSRCSFLSGRTNLPLSFSRV--SLSLKAKTNLK 227
+T S K LAM +SSSST+F PS+ ISS S R N LS V +LSLK+KT
Sbjct: 6 LTPSLKLLAMTNSSSSTLFCIPSIFNISSS---ESHRFNFSLSSRPVNLTLSLKSKTLRN 62
Query: 228 KSPFVSFVAQTSDWDAEEGGDVSASVAVEENEPEATFSEGDVGEGGDFPEPLEEAKLFVG 407
SP V+FV+QTS+W EE G+ + E+ SE VG FPEP EEAKLFVG
Sbjct: 63 SSPVVTFVSQTSNWAEEEEGEDGSIGGTSVTVDESFESEDGVG----FPEPPEEAKLFVG 118
Query: 408 NLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYD 587
NL YDVDSQALAMLFEQAGTVEI+EVIYNR+TDQSRGFGFVTMSTVEEAE AVEKFN ++
Sbjct: 119 NLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFE 178
Query: 588 LNGRLLTVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARV 767
+NGR LTVN+AAPRGSRPERQPRVY+ AFR+YVGNLPWDVD+GRLE++FSEHGKVV+ARV
Sbjct: 179 VNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARV 238
Query: 768 VYDRETGRSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRVNVAEERPRR 920
V DRETGRSRGFGFV MSNE E+N AIAALDGQN+EGRAI+VNVAEER RR
Sbjct: 239 VSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTRR 289
>gi|15233980|ref|NP_194208.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 329
Score = 367 bits (940), Expect = 3e-099
Identities = 212/312 (67%), Positives = 237/312 (75%), Gaps = 16/312 (5%)
Frame = +3
Query: 18 SHTS-SSAMASSIVTSSFKPLAMADSSSSTIFSHPSLS-------TISSRCSFLSGRTNL 173
SH S SS ++SS + SS L + FS SLS S SF++ ++
Sbjct: 25 SHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSPFVSFVAQTSDW 84
Query: 174 PLSFSRVSLSLKAKTNLKKSPFVSFVAQTSDWDAEEGGDVSASVAVEENEPEATFSEGDV 353
S++++ N +S VS S+ DA E GDVS E +E E SEG V
Sbjct: 85 AEEGGEGSVAVEETENSLESQDVS-EGDESEGDASE-GDVS-----EGDESEGDVSEGAV 137
Query: 354 GEGGDFPEPLEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 533
E +FPEP EEAKLFVGNLAYDV+SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT
Sbjct: 138 SERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 197
Query: 534 MSTVEEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDN 713
MS+V+EAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER PRVYEPAFRVYVGNLPWDVDN
Sbjct: 198 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 257
Query: 714 GRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRV 893
GRLEQ+FSEHGKVVEARVVYDRETGRSRGFGFVTMS+ ELN+AI+ALDGQN+EGRAIRV
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Query: 894 NVAEER-PRRGF 926
NVAEER PRRG+
Sbjct: 318 NVAEERPPRRGY 329
>gi|475719|gb|AAA18379.1| RNA-binding protein 2 [Arabidopsis thaliana]
Length = 315
Score = 367 bits (940), Expect = 3e-099
Identities = 212/312 (67%), Positives = 237/312 (75%), Gaps = 16/312 (5%)
Frame = +3
Query: 18 SHTS-SSAMASSIVTSSFKPLAMADSSSSTIFSHPSLS-------TISSRCSFLSGRTNL 173
SH S SS ++SS + SS L + FS SLS S SF++ ++
Sbjct: 11 SHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSPFVSFVAQTSDW 70
Query: 174 PLSFSRVSLSLKAKTNLKKSPFVSFVAQTSDWDAEEGGDVSASVAVEENEPEATFSEGDV 353
S++++ N +S VS S+ DA E GDVS E +E E SEG V
Sbjct: 71 AEEGGEGSVAVEETENSLESQDVS-EGDESEGDASE-GDVS-----EGDESEGDVSEGAV 123
Query: 354 GEGGDFPEPLEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 533
E +FPEP EEAKLFVGNLAYDV+SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT
Sbjct: 124 SERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 183
Query: 534 MSTVEEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDN 713
MS+V+EAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER PRVYEPAFRVYVGNLPWDVDN
Sbjct: 184 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 243
Query: 714 GRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRV 893
GRLEQ+FSEHGKVVEARVVYDRETGRSRGFGFVTMS+ ELN+AI+ALDGQN+EGRAIRV
Sbjct: 244 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 303
Query: 894 NVAEER-PRRGF 926
NVAEER PRRG+
Sbjct: 304 NVAEERPPRRGY 315
>gi|15294254|gb|AAK95304.1|AF410318_1 AT4g24770/F22K18_30 [Arabidopsis
thaliana]
Length = 329
Score = 365 bits (936), Expect = 8e-099
Identities = 210/309 (67%), Positives = 234/309 (75%), Gaps = 15/309 (4%)
Frame = +3
Query: 18 SHTS-SSAMASSIVTSSFKPLAMADSSSSTIFSHPSLS-------TISSRCSFLSGRTNL 173
SH S SS ++SS + SS L + FS SLS S SF++ ++
Sbjct: 25 SHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSPFVSFVAQTSDW 84
Query: 174 PLSFSRVSLSLKAKTNLKKSPFVSFVAQTSDWDAEEGGDVSASVAVEENEPEATFSEGDV 353
S++++ N +S VS S+ DA E GDVS E +E E SEG V
Sbjct: 85 AEEGGEGSVAVEETENSLESQDVS-EGDESEGDASE-GDVS-----EGDESEGDVSEGAV 137
Query: 354 GEGGDFPEPLEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 533
E +FPEP EEAKLFVGNLAYDV+SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT
Sbjct: 138 SERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVT 197
Query: 534 MSTVEEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDN 713
MS+V+EAETAVEKFNRYDLNGRLLTVNKAAPRGSRPER PRVYEPAFRVYVGNLPWDVDN
Sbjct: 198 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDN 257
Query: 714 GRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRV 893
GRLEQ+FSEHGKVVEARVVYDRETGRSRGFGFVTMS+ ELN+AI+ALDGQN+EGRAIRV
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Query: 894 NVAEERPRR 920
NVAEERP R
Sbjct: 318 NVAEERPPR 326
>gi|510240|emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
Length = 310
Score = 362 bits (929), Expect = 5e-098
Identities = 185/218 (84%), Positives = 196/218 (89%), Gaps = 1/218 (0%)
Frame = +3
Query: 276 EEGGDVSASVAVEENEPEATFSEGDVGEGGDFPEPLEEAKLFVGNLAYDVDSQALAMLFE 455
E GD S E +E E SEG V E +FPEP EEAKLFVGNLAYDV+SQALAMLFE
Sbjct: 93 ESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFE 152
Query: 456 QAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPRGS 635
QAGTVEIAEVIYNRETDQSRGFGFVTMS+V+EAETAVEKFNRYDLNGRLLTVNKAAPRGS
Sbjct: 153 QAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGS 212
Query: 636 RPERQPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVT 815
RPER PRVYEPAFRVYVGNLPWDVDNGRLEQ+FSEHGKVVEARVVYDRETGRSRGFGFVT
Sbjct: 213 RPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVT 272
Query: 816 MSNETELNDAIAALDGQNMEGRAIRVNVAEER-PRRGF 926
MS+ ELN+AI+ALDGQN+EGRAIRVNVAEER PRRG+
Sbjct: 273 MSDVDELNEAISALDGQNLEGRAIRVNVAEERPPRRGY 310
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 336 bits (860), Expect = 5e-090
Identities = 190/306 (62%), Positives = 227/306 (74%), Gaps = 18/306 (5%)
Frame = +3
Query: 45 SSIVTSSFKPLAMADSSSSTIFSHPSLSTISSRCSFLSGRTNLP----LSFSRVSL---S 203
SS KP ++ + S S P++ + + S+L + P LS S+ SL S
Sbjct: 2 SSATHHLLKPFSIPNGSP---ISLPTIFSTKTPHSYLPIPPHKPIKLLLSCSQSSLFSPS 58
Query: 204 LKAKTNLKKSPFVSFVAQTSDWDAEEGGDVSASVAVEENE------PEATFSEGDVGEGG 365
L K+ S V+FVAQTSDW A++ D + + E+ E EA +G V +G
Sbjct: 59 LFLKSKTLSSSVVTFVAQTSDW-AQQEEDNTVIIEEEQEEKVTWENEEAISDDGVVDDGE 117
Query: 366 D-FPEPLEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMST 542
D + EP EEAK+FVGNL YDVDS+ LA LFEQAG VEIAEVIYNRETD+SRGFGFV+MST
Sbjct: 118 DSYSEPPEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMST 177
Query: 543 VEEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRL 722
VEEAE AV+ F+RY+L+GRLLTVNKAAPRGS+PER PRV+EPAFR+YVGNLPWDVD+ RL
Sbjct: 178 VEEAEKAVDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARL 237
Query: 723 EQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRVNVA 902
EQVFSEHGKVVEARVV+DRETGRSRGFGFVTMS++TEL DAIAA DGQ ++GR IRVNVA
Sbjct: 238 EQVFSEHGKVVEARVVFDRETGRSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVA 297
Query: 903 EERPRR 920
EERPRR
Sbjct: 298 EERPRR 303
>gi|255540443|ref|XP_002511286.1| ribonucleoprotein, chloroplast, putative
[Ricinus communis]
Length = 319
Score = 334 bits (856), Expect = 2e-089
Identities = 170/225 (75%), Positives = 192/225 (85%), Gaps = 5/225 (2%)
Frame = +3
Query: 252 AQTSDWDAEEGGDVSASVAVEENEPEATFSEGDVGEGGDFPEPLEEAKLFVGNLAYDVDS 431
A+ SDWD+E SA+V + E E F + E F EP E+AK+FVGNL YDVDS
Sbjct: 100 ARVSDWDSE---GESAAVDGQGEEEEEVFEGSEPEEA--FEEPPEDAKIFVGNLPYDVDS 154
Query: 432 QALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTV 611
Q LAMLFEQAGTVEIAEVIYNRETD SRGFGFV+MSTVEEAE AVE F+R+DL+GRLLTV
Sbjct: 155 QKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVEMFHRHDLDGRLLTV 214
Query: 612 NKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGR 791
NKAAPRGSRPER PRV+EP +R+YVGNLPWDVDN RLEQ+FSEHGKVV+ARVVYDR+TGR
Sbjct: 215 NKAAPRGSRPERPPRVFEPGYRIYVGNLPWDVDNARLEQIFSEHGKVVDARVVYDRDTGR 274
Query: 792 SRGFGFVTMSNETELNDAIAALDGQNMEGRAIRVNVAEERPRRGF 926
SRGFGFVTMS ETELNDAIAALDG++++GRAIRVNVAE+RPRR F
Sbjct: 275 SRGFGFVTMSTETELNDAIAALDGRSLDGRAIRVNVAEQRPRRNF 319
>gi|225452270|ref|XP_002270233.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 312
Score = 332 bits (849), Expect = 1e-088
Identities = 166/221 (75%), Positives = 190/221 (85%), Gaps = 3/221 (1%)
Frame = +3
Query: 267 WDAEEGGDVSASVAVEENEPEATFSEGDVGEGGD--FPEPLEEAKLFVGNLAYDVDSQAL 440
WD+E G ++ AS + E E E +G+ EG + + EP EEAKLFVGNL YD+DS+ L
Sbjct: 91 WDSEGGEEIEASGSEEAWEGEVG-EDGEESEGSEDTYSEPPEEAKLFVGNLPYDIDSEKL 149
Query: 441 AMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVNKA 620
A LF++AG VEIAEVIYNRETDQSRGFGF+TMSTVEEAE AVE FNRYDLNGR LTVNKA
Sbjct: 150 AQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEMFNRYDLNGRFLTVNKA 209
Query: 621 APRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRG 800
APRGSRPER P+ +EP+FR+YVGNLPW VD+ RLEQVFSEHGKVV+ARVVYDR+T RSRG
Sbjct: 210 APRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRG 269
Query: 801 FGFVTMSNETELNDAIAALDGQNMEGRAIRVNVAEERPRRG 923
FGFVTMS+ETELNDAIAALDGQ+++GRAIRVNVAEERPRRG
Sbjct: 270 FGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRRG 310
>gi|19032260|emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
Length = 300
Score = 329 bits (841), Expect = 9e-088
Identities = 167/225 (74%), Positives = 187/225 (83%), Gaps = 2/225 (0%)
Frame = +3
Query: 252 AQTSDWDAEEGGDVSASVAVEENEPEATFSEGDV--GEGGDFPEPLEEAKLFVGNLAYDV 425
A SDW+ E G+ + E + +G V GE +P P EEAKLFVGNL YDV
Sbjct: 73 ATLSDWEGEGEGEGEEQTESGAEDGEESGGDGFVEGGEEDSYPLPPEEAKLFVGNLPYDV 132
Query: 426 DSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLL 605
D QALA LF+QAGTVE+AEVIYNRETDQSRGFGFVTMSTVEEAE AVE FNRYD+NGRLL
Sbjct: 133 DHQALAELFDQAGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEMFNRYDINGRLL 192
Query: 606 TVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRET 785
TVNKAAPRG+R +R PR +EPAFR+YVGNLPW VD+ RLEQVFSEHGKVVEARVVYDRET
Sbjct: 193 TVNKAAPRGARVDRPPRAFEPAFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRET 252
Query: 786 GRSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRVNVAEERPRR 920
GRSRGFGFVTMS +TEL+DAIAALDGQ+++GRAIRVNVAE+RPRR
Sbjct: 253 GRSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNVAEDRPRR 297
>gi|224119514|ref|XP_002318093.1| predicted protein [Populus trichocarpa]
Length = 327
Score = 329 bits (841), Expect = 9e-088
Identities = 169/228 (74%), Positives = 185/228 (81%), Gaps = 6/228 (2%)
Frame = +3
Query: 261 SDWDAEEGGDVSASVAVEENE------PEATFSEGDVGEGGDFPEPLEEAKLFVGNLAYD 422
S+W EE D V E E EA EG+ G+ F EP EEAK+FVGNL YD
Sbjct: 100 SNWVNEESNDFEGKVPEWEAEGEDAAATEAIRGEGESGDEEGFVEPPEEAKIFVGNLPYD 159
Query: 423 VDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRL 602
VDS+ LAMLFEQAGTVEIAEVIYNRETD SRGFGFVTMSTVEE+E AVE +RYDL+GR
Sbjct: 160 VDSEKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVTMSTVEESEKAVEMLHRYDLDGRF 219
Query: 603 LTVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRE 782
LTVNKAAPRGSRPER PRV EP +R+YVGNLPWDVD+GRLEQ+FSEHGKVV ARVV+DRE
Sbjct: 220 LTVNKAAPRGSRPERPPRVSEPGYRIYVGNLPWDVDSGRLEQIFSEHGKVVSARVVFDRE 279
Query: 783 TGRSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRVNVAEERPRRGF 926
T RSRGFGFVTMS E+ELNDAIAALDGQN++GR IRVNVAEERPRR F
Sbjct: 280 TNRSRGFGFVTMSTESELNDAIAALDGQNLDGRPIRVNVAEERPRRTF 327
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum
crystallinum]
Length = 306
Score = 327 bits (837), Expect = 3e-087
Identities = 184/310 (59%), Positives = 218/310 (70%), Gaps = 18/310 (5%)
Frame = +3
Query: 39 MASSIVTSSFKPLAMADSSSSTIFSHPSL-STISSRCSFLSGRTNLPLSFSRVSLSLKAK 215
M+S+ K L+++ + +T PS+ + S S T L LS S S
Sbjct: 1 MSSATANPCLKTLSLSHNCFTTSLYTPSIFNPKSHNFSIPLKPTKLNLSISVFS----PF 56
Query: 216 TNLKKSPFVSFVAQTSDWDAEE-----------GGDVSASVAVEENEPEAT--FSEGDVG 356
+ K S VS+VAQTSDWD E GG + ++EP+ + +E +
Sbjct: 57 SPQKSSTIVSYVAQTSDWDQESSNALLDDEQQVGGATWGTQNFGDSEPQVSGVGNEDEEE 116
Query: 357 EGGDFPEPLEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTM 536
F EP EEAKLFVGNL YDVDS+ LA +F+ AG VEIAEVIYNRETD+SRGFGFVTM
Sbjct: 117 SEQGFSEPPEEAKLFVGNLPYDVDSERLAQIFDGAGVVEIAEVIYNRETDRSRGFGFVTM 176
Query: 537 STVEEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNG 716
STVEEAE AVE N +D+NGRLLTVNKAAPRGSRPER PR +EP+ RVYVGNLPWDVDN
Sbjct: 177 STVEEAEKAVEMLNGFDMNGRLLTVNKAAPRGSRPERPPREFEPSCRVYVGNLPWDVDNA 236
Query: 717 RLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRVN 896
RLEQVFSEHGKV+ ARVV DRETGRSRGFGFV+M++E+E+NDAIAALDGQ ++GRAIRVN
Sbjct: 237 RLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMASESEMNDAIAALDGQTLDGRAIRVN 296
Query: 897 VAEERPRRGF 926
VAEERPRR F
Sbjct: 297 VAEERPRRAF 306
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 327 bits (836), Expect = 3e-087
Identities = 178/283 (62%), Positives = 211/283 (74%), Gaps = 6/283 (2%)
Frame = +3
Query: 96 SSTIFSHPSLSTISSRCSFLSGRTNLPLSFSRVSLSLKAKTNLKK---SPFVSFVAQTSD 266
+S++ S L S S S T +PLS S S L + + K+ S V++VAQTS+
Sbjct: 7 TSSLHSPSILIPKSLFFSIPSKPTKIPLSLSLSSPQLSSFSLQKQTLSSTVVTYVAQTSE 66
Query: 267 WDAEEGGDVSASVAVEE---NEPEATFSEGDVGEGGDFPEPLEEAKLFVGNLAYDVDSQA 437
WD E V + +E EA S+ EG F EP E+AKLFVGNL +DVDS+
Sbjct: 67 WDQEGTNAVLEEGSDQEPSWGNTEAQVSDFGSDEGEGFQEPPEDAKLFVGNLPFDVDSEK 126
Query: 438 LAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVNK 617
LA +FE AG VEIAEVIYNRETD+SRGFGFVTMSTVEEAE AVE ++++++NGR LTVNK
Sbjct: 127 LAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELYHKFEVNGRFLTVNK 186
Query: 618 AAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSR 797
AAPRGSRPER PR YEP+FRVYVGNLPWDVD+ RLEQVFSEHGKV+ ARVV DRETGRSR
Sbjct: 187 AAPRGSRPERAPREYEPSFRVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSR 246
Query: 798 GFGFVTMSNETELNDAIAALDGQNMEGRAIRVNVAEERPRRGF 926
GF FVTM++E+E+N+AI ALDGQ +EGRAIRVNVAEERPRR F
Sbjct: 247 GFAFVTMASESEMNEAIGALDGQTLEGRAIRVNVAEERPRRSF 289
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 325 bits (832), Expect = 1e-086
Identities = 173/265 (65%), Positives = 204/265 (76%), Gaps = 14/265 (5%)
Frame = +3
Query: 162 RTNLPLSFSRVSLSLKAKTNLKKSPFVSFVAQTSDWDAEEGGDVSASVAVE--------- 314
+ L S S +LS+K KT+L S + FVAQTSDW +E + + E
Sbjct: 30 KLQLSYSHSLSTLSVKPKTHL--SLTIPFVAQTSDWAQQEEENNTTITLTEVSDWEAEGE 87
Query: 315 ---ENEPEATFSEGDVGEGGDFPEPLEEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEV 485
+E EA EG+ G+ F EP EEAK++VGNL YDV S+ LAMLF+QAGTVEI+EV
Sbjct: 88 DAAASETEAVRGEGERGDEEGFVEPPEEAKIYVGNLPYDVTSEKLAMLFDQAGTVEISEV 147
Query: 486 IYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERQPRVYE 665
IYN ETD SRGFGFVTMSTVEE++ A+E FNRY+L+GRLLTVNKAAPRGSRPER PRV E
Sbjct: 148 IYNTETDTSRGFGFVTMSTVEESDKAIEMFNRYNLDGRLLTVNKAAPRGSRPERPPRVSE 207
Query: 666 PAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMSNETELNDA 845
P++R+YVGNLPW VD+GRLE+VFSEHGKVV A+VV D ETGRSRGFGFVTMS+E+ELNDA
Sbjct: 208 PSYRIYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDA 267
Query: 846 IAALDGQNMEGRAIRVNVAEERPRR 920
IAALDGQ ++GRAIRVNVA ERPRR
Sbjct: 268 IAALDGQELDGRAIRVNVAAERPRR 292
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 323 bits (826), Expect = 5e-086
Identities = 166/233 (71%), Positives = 191/233 (81%), Gaps = 5/233 (2%)
Frame = +3
Query: 231 SPFVSFVAQTSDWDAEEGGDVSASVAVEENEPEATFSEGDVGEGGD--FPEPLEEAKLFV 404
S +VS +TS ++ A +E E E +G+ EG + + EP EEAKLFV
Sbjct: 41 SSWVSLKTKTSPTTLVPFVAQTSDWAQQEEEEE---KDGEESEGSEDTYSEPPEEAKLFV 97
Query: 405 GNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRY 584
GNL YD+DS+ LA LF++AG VEIAEVIYNRETDQSRGFGF+TMSTVEEAE AVE FNRY
Sbjct: 98 GNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKAVEMFNRY 157
Query: 585 DLNGRLLTVNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEAR 764
DLNGR LTVNKAAPRGSRPER P+ +EP+FR+YVGNLPW VD+ RLEQVFSEHGKVV+AR
Sbjct: 158 DLNGRFLTVNKAAPRGSRPERPPQAFEPSFRIYVGNLPWQVDDARLEQVFSEHGKVVDAR 217
Query: 765 VVYDRETGRSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRVNVAEERPRRG 923
VVYDR+T RSRGFGFVTMS+ETELNDAIAALDGQ+++GRAIRVNVAEERPRRG
Sbjct: 218 VVYDRDTQRSRGFGFVTMSSETELNDAIAALDGQSLDGRAIRVNVAEERPRRG 270
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis
vinifera]
Length = 1122
Score = 320 bits (819), Expect = 3e-085
Identities = 167/224 (74%), Positives = 188/224 (83%), Gaps = 6/224 (2%)
Frame = +3
Query: 267 WDAE--EGGDVSASVAVEENE---PEATFSEGDVGEGGD-FPEPLEEAKLFVGNLAYDVD 428
W+ E EG D AS E E EA +G V +G D + EP EEAK+FVGNL YDVD
Sbjct: 896 WENEEVEGPDAQASDWESEGEGAVTEAISDDGVVDDGEDSYSEPPEEAKVFVGNLPYDVD 955
Query: 429 SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLT 608
S+ LA LFEQAG VEIAEVIYNRETD+SRGFGFV+MSTVEEAE AV+ F+RY+L+GRLLT
Sbjct: 956 SERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLT 1015
Query: 609 VNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETG 788
VNKAAPRGS+PER PRV+EPAFR+YVGNLPWDVD+ RLEQVFSEHGKVVEARVV+DRETG
Sbjct: 1016 VNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETG 1075
Query: 789 RSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRVNVAEERPRR 920
RSRGFGFVTMS++TEL DAIAA DGQ ++GR IRVNVAEERPRR
Sbjct: 1076 RSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEERPRR 1119
>gi|225456840|ref|XP_002278832.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 327
Score = 320 bits (819), Expect = 3e-085
Identities = 167/224 (74%), Positives = 188/224 (83%), Gaps = 6/224 (2%)
Frame = +3
Query: 267 WDAE--EGGDVSASVAVEENE---PEATFSEGDVGEGGD-FPEPLEEAKLFVGNLAYDVD 428
W+ E EG D AS E E EA +G V +G D + EP EEAK+FVGNL YDVD
Sbjct: 101 WENEEVEGPDAQASDWESEGEGAVTEAISDDGVVDDGEDSYSEPPEEAKVFVGNLPYDVD 160
Query: 429 SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETAVEKFNRYDLNGRLLT 608
S+ LA LFEQAG VEIAEVIYNRETD+SRGFGFV+MSTVEEAE AV+ F+RY+L+GRLLT
Sbjct: 161 SERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKAVDMFHRYELDGRLLT 220
Query: 609 VNKAAPRGSRPERQPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETG 788
VNKAAPRGS+PER PRV+EPAFR+YVGNLPWDVD+ RLEQVFSEHGKVVEARVV+DRETG
Sbjct: 221 VNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETG 280
Query: 789 RSRGFGFVTMSNETELNDAIAALDGQNMEGRAIRVNVAEERPRR 920
RSRGFGFVTMS++TEL DAIAA DGQ ++GR IRVNVAEERPRR
Sbjct: 281 RSRGFGFVTMSSQTELEDAIAATDGQTLDGRTIRVNVAEERPRR 324
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,261,706,102,847
Number of Sequences: 15229318
Number of Extensions: 5261706102847
Number of Successful Extensions: 1224141854
Number of sequences better than 0.0: 0
|
