BLASTX 7.6.2
Query= UN48903 /QuerySize=1118
(1117 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G51120.1 | Symbols: PABN1, ATPABN1 | PABN1 (PO... 395 4e-110
TAIR9_protein||AT5G65260.1 | Symbols: | polyadenylate-binding p... 253 2e-067
TAIR9_protein||AT5G10350.1 | Symbols: | polyadenylate-binding p... 246 3e-065
TAIR9_protein||AT5G10350.2 | Symbols: | polyadenylate-binding p... 221 6e-058
TAIR9_protein||AT2G16940.1 | Symbols: | RNA recognition motif (... 54 2e-007
>TAIR9_protein||AT5G51120.1 | Symbols: PABN1, ATPABN1 | PABN1
(POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding /
protein binding | chr5:20779760-20781241 FORWARD
Length = 228
Score = 395 bits (1013), Expect = 4e-110
Identities = 197/233 (84%), Positives = 209/233 (89%), Gaps = 6/233 (2%)
Frame = +1
Query: 73 MALQDEQEHEVYGGDIPEEDEGEMETDEYLEHAGEEEEGAAAAAEDEEELEPGSASRDLE 252
M + DEQEHEVYGG+IPEE+EGEM+T+EY EH G EEGAAA +EELEPGS+SRDLE
Sbjct: 1 MPVHDEQEHEVYGGEIPEEEEGEMDTEEYEEHGG--EEGAAAG---DEELEPGSSSRDLE 55
Query: 253 EMKKRIKEIEEEASTLREMQAKAENDMAAAQDPSSAISAVEKEEVDLRSIYVGNVDYACT 432
+MKKRIKEIEEEA LREMQAKAE DM A+QDPS +SA EKEEVD RSIYVGNVDYACT
Sbjct: 56 DMKKRIKEIEEEAGALREMQAKAEKDMGASQDPSGGVSAAEKEEVDSRSIYVGNVDYACT 115
Query: 433 PEEVQQHFQSCWTVNRVTILTDKFGQPKGFAYVEFVEEEAVQNSLVLNETELRGRQIKVS 612
PEEVQQHFQSC TVNRVTILTDKFGQPKGFAYVEFVE EAVQNSL+LNE+EL GRQIKVS
Sbjct: 116 PEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVS 175
Query: 613 AKRTNVPGMRQFRGR-RPFRPMRGFMPGPPFYPPYAYGRVPRFRRPMRYRPY* 768
AKRTNVPGMRQFRGR RPFRPMRGFMPG PFYPPYAYGRVPRFRRPMRYRPY*
Sbjct: 176 AKRTNVPGMRQFRGRGRPFRPMRGFMPGVPFYPPYAYGRVPRFRRPMRYRPY* 228
>TAIR9_protein||AT5G65260.1 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:26080501-26082984 REVERSE
Length = 221
Score = 253 bits (645), Expect = 2e-067
Identities = 137/224 (61%), Positives = 164/224 (73%), Gaps = 19/224 (8%)
Frame = +1
Query: 109 GGDIPEEDEGEMETDEYLEHAGEEEEGAAAAAEDEEELEPGSASRDLEEMKKRIKEIEEE 288
GG+IP D GEM+ D +E + + AAA+D+ A ++L+EMKKR+KE+E+E
Sbjct: 10 GGEIP--DVGEMDGD--MEALNPDLD--MAAADDD-------AVKELDEMKKRLKEMEDE 56
Query: 289 ASTLREMQAKAENDMAAAQDPSSAISAVEKEEVDLRSIYVGNVDYACTPEEVQQHFQSCW 468
A+ LREMQAK E +M A S A + KEEVD RS++VGNVDYACTPEEVQQHFQ+C
Sbjct: 57 AAALREMQAKVEKEMGAQDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCG 116
Query: 469 TVNRVTILTDKFGQPKGFAYVEFVEEEAVQNSLVLNETELRGRQIKVSAKRTNVPGMRQF 648
TV+RVTILTDKFGQPKGFAYVEFVE EAVQ +L LNE+EL GRQ+KV KRTNVPG++QF
Sbjct: 117 TVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQF 176
Query: 649 RGRRPFRPMRGFMPGPPF-----YPPYAYGRVPRFRRPMRYRPY 765
RGRR F P G+ PF Y PY YG+ PRFRRPMRY PY
Sbjct: 177 RGRR-FNPYMGYRFRRPFMSPYMYSPYGYGKAPRFRRPMRYMPY 219
>TAIR9_protein||AT5G10350.1 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:3255674-3257746 REVERSE
Length = 218
Score = 246 bits (626), Expect = 3e-065
Identities = 133/218 (61%), Positives = 157/218 (72%), Gaps = 12/218 (5%)
Frame = +1
Query: 142 METDEYLEHAGEEEEGAAAAAEDEEELEPGSASRD----LEEMKKRIKEIEEEASTLREM 309
ME +E+ + GE E D +++ +A D L EMK+R+KE+EEEA+ LREM
Sbjct: 1 MEEEEHEVYGGEIPEVGDTDVPD-PDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREM 59
Query: 310 QAKAENDMAAAQDPSSAISAVE-KEEVDLRSIYVGNVDYACTPEEVQQHFQSCWTVNRVT 486
QAK E +M A QDP+S + E KEEVD RS+YVGNVDYACTPEEVQ HFQ+C TVNRVT
Sbjct: 60 QAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVT 119
Query: 487 ILTDKFGQPKGFAYVEFVEEEAVQNSLVLNETELRGRQIKVSAKRTNVPGMRQFRGRR-- 660
IL DKFGQPKGFAYVEFVE EAVQ +L LNE+EL GRQ+KVS KRTNVPGM+Q+ R
Sbjct: 120 ILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFN 179
Query: 661 ---PFRPMRGFMPGPPFYPPYAYGRVPRFRRPMRYRPY 765
+R R F+P P FY PY YG+ PRFRRPMRY PY
Sbjct: 180 PSMGYRFRRPFVP-PYFYSPYGYGKAPRFRRPMRYMPY 216
>TAIR9_protein||AT5G10350.2 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:3255808-3257746 REVERSE
Length = 203
Score = 221 bits (563), Expect = 6e-058
Identities = 120/198 (60%), Positives = 142/198 (71%), Gaps = 7/198 (3%)
Frame = +1
Query: 142 METDEYLEHAGEEEEGAAAAAEDEEELEPGSASRD----LEEMKKRIKEIEEEASTLREM 309
ME +E+ + GE E D +++ +A D L EMK+R+KE+EEEA+ LREM
Sbjct: 1 MEEEEHEVYGGEIPEVGDTDVPD-PDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREM 59
Query: 310 QAKAENDMAAAQDPSSAISAVE-KEEVDLRSIYVGNVDYACTPEEVQQHFQSCWTVNRVT 486
QAK E +M A QDP+S + E KEEVD RS+YVGNVDYACTPEEVQ HFQ+C TVNRVT
Sbjct: 60 QAKVEKEMGATQDPASMAANQEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVT 119
Query: 487 ILTDKFGQPKGFAYVEFVEEEAVQNSLVLNETELRGRQIKVSAKRTNVPGMRQFRGRRPF 666
IL DKFGQPKGFAYVEFVE EAVQ +L LNE+EL GRQ+KVS KRTNVPGM+Q+ R F
Sbjct: 120 ILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGR-F 178
Query: 667 RPMRGFMPGPPFYPPYAY 720
P G+ PF PPY Y
Sbjct: 179 NPSMGYRFRRPFVPPYFY 196
>TAIR9_protein||AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:7342869-7347052 REVERSE
Length = 562
Score = 54 bits (128), Expect = 2e-007
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Frame = +1
Query: 394 RSIYVGNVDYACTPEEVQQHFQSCWTVNRVTILTDKFGQPKGFAYVEFVEEEAVQNSLVL 573
R +YVGN+ + +++++ F+S +V V + D+ G KGF +V+F E +N+L L
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNL 344
Query: 574 N-ETELRGRQIKVSA--KRTNVP 633
N + E+ GR IKVSA +T VP
Sbjct: 345 NGQLEIAGRAIKVSAVTDQTEVP 367
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,348,893,287
Number of Sequences: 33410
Number of Extensions: 23348893287
Number of Successful Extensions: 739668173
Number of sequences better than 0.0: 0
|
