BLASTX 7.6.2
Query= UN49272 /QuerySize=1138
(1137 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=... 115 9e-025
sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=... 104 2e-021
sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic ... 78 1e-013
sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Ho... 77 2e-013
sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A ... 74 2e-012
sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=... 73 3e-012
sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B ... 73 4e-012
sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabido... 72 5e-012
sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabido... 66 4e-010
sp|P37838|NOP4_YEAST Nucleolar protein 4 OS=Saccharomyces cerevi... 57 2e-007
sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=... 57 2e-007
sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing prot... 55 8e-007
sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05... 55 8e-007
sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2... 54 2e-006
sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sa... 53 4e-006
sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus mus... 53 4e-006
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 324
Score = 115 bits (286), Expect = 9e-025
Identities = 69/185 (37%), Positives = 108/185 (58%), Gaps = 7/185 (3%)
Frame = -3
Query: 895 AEEETSLTDEKTEETTQTTNLKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQK-D 719
AEEE + +EK E + +L+V NLP+SM+ + +S +F + GTV +VEI+ +
Sbjct: 93 AEEEEEI-EEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVT 151
Query: 718 GKNRGFAFVTMSSGEEAQSAVEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSATSSP--- 548
++RGFAFVTM S EEA+ A+ FD QV GR ++VNF + + + + S
Sbjct: 152 DRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQG 211
Query: 547 -GETRHKLYVSNLAWKARSTHLREFFTAADFNLVSARVVFADPGGRASGYGFVSFITREE 371
++ HKLYV+NL+W S LR+ F A +SA+V++ GR+ G+GF++F + E
Sbjct: 212 FVDSPHKLYVANLSWALTSQGLRDAF-ADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEA 270
Query: 370 AEDAI 356
A+
Sbjct: 271 MNSAL 275
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis
thaliana GN=RBP31 PE=1 SV=1
Length = 329
Score = 104 bits (258), Expect = 2e-021
Identities = 62/164 (37%), Positives = 95/164 (57%), Gaps = 7/164 (4%)
Frame = -3
Query: 826 KLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKD-GKNRGFAFVTMSSGEEAQSAVEK 650
KLFV NL + ++ ++ LF Q GTV E+I ++ ++RGF FVTMSS +EA++AVEK
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 649 FDSFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHKLYVSNLAWKARSTHLREFFT 470
F+ + ++GR++ VN K P+ P E ++YV NL W + L + F+
Sbjct: 211 FNRYDLNGRLLTVN-----KAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFS 265
Query: 469 AADFNLVSARVVFADPGGRASGYGFVSFITREEAEDAIFKLDGK 338
+V ARVV+ GR+ G+GFV+ +E +AI LDG+
Sbjct: 266 EHG-KVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQ 308
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2
Length = 653
Score = 78 bits (190), Expect = 1e-013
Identities = 46/168 (27%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Frame = -3
Query: 823 LFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKFD 644
+++ NL ++ + S+LFGQ G + S+ ++K ++ K RGF FV ++ E AQ AV++ +
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 643 SFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHK-----LYVSNLAWKARSTHLRE 479
+ G+ + V A+K + + L E +K L++ NL + L+
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 478 FFTAADFNLVSARVVFADPGGRASGYGFVSFITREEAEDAIFKLDGKV 335
F+A F +++ + D G++ G+GFV + T EEA A+ +++ ++
Sbjct: 383 EFSA--FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRM 428
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens
GN=PABPC1L PE=2 SV=1
Length = 614
Score = 77 bits (189), Expect = 2e-013
Identities = 50/168 (29%), Positives = 86/168 (51%), Gaps = 8/168 (4%)
Frame = -3
Query: 823 LFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKFD 644
++V NLP + + +LF Q G +LSV++++ G +R F FV EEAQ AV +
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 643 SFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHK-----LYVSNLAWKARSTHLRE 479
+VSGR++ A+K + L + + LYV NL LR+
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 478 FFTAADFNLVSARVVFADPGGRASGYGFVSFITREEAEDAIFKLDGKV 335
F + + ++++ V + GG + G+GFV F + EEA A+ +++G++
Sbjct: 313 EF--SPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus
laevis GN=epabp-a PE=1 SV=2
Length = 629
Score = 74 bits (179), Expect = 2e-012
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Frame = -3
Query: 823 LFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKFD 644
+++ N M + +F G LSV+++ G++RGF FV + EEAQ AV + +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 643 SFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHK-----LYVSNLAWKARSTHLRE 479
+V+GR+I V A+K + L E ++ LYV NL LR+
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 478 FFTAADFNLVSARVVFADPGGRASGYGFVSFITREEAEDAIFKLDGKV 335
F + SA+V+ GG + G+GFV F + EEA A+ +++G++
Sbjct: 313 EFLPYG-TITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus
tropicalis GN=epabp PE=2 SV=1
Length = 629
Score = 73 bits (178), Expect = 3e-012
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Frame = -3
Query: 823 LFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKFD 644
+++ N M + +F G LSV+++ G++RGF FV + EEAQ AV + +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMN 252
Query: 643 SFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHK-----LYVSNLAWKARSTHLRE 479
+V+GR+I V A+K + L E ++ LYV NL LR+
Sbjct: 253 GKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 478 FFTAADFNLVSARVVFADPGGRASGYGFVSFITREEAEDAIFKLDGKV 335
F+ + SA+V+ GG + G+GFV F + EEA A+ +++G++
Sbjct: 313 EFSPYG-TITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus
laevis GN=epabp-b PE=2 SV=1
Length = 629
Score = 73 bits (177), Expect = 4e-012
Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Frame = -3
Query: 823 LFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKFD 644
+++ N M + +F G LSV+++ G++RGF FV + EEAQ AV + +
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Query: 643 SFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHK-----LYVSNLAWKARSTHLRE 479
+V+GR++ V A+K + L E ++ LYV NL LR+
Sbjct: 253 GKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRK 312
Query: 478 FFTAADFNLVSARVVFADPGGRASGYGFVSFITREEAEDAIFKLDGKV 335
F + + +++ V + GG + G+GFV F + EEA A+ +++G++
Sbjct: 313 EF--SPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana
GN=PAB3 PE=2 SV=1
Length = 660
Score = 72 bits (176), Expect = 5e-012
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
Frame = -3
Query: 868 EKTEETTQTTNLKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVT 689
E+ + T ++V NLP + +++ FG+ G + S +++ + G +R F FV
Sbjct: 216 ERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVN 275
Query: 688 MSSGEEAQSAVEKFDSFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHK-----LY 524
E A SAVEK + + ++ V A+K + + L K LY
Sbjct: 276 FECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLY 335
Query: 523 VSNLAWKARSTHLREFFTAADFNLVSARVVFADPGGRASGYGFVSFITREEAEDAIFKLD 344
+ NL L+E F +++ V++ V +P G + G+GFV++ EEA A+ +++
Sbjct: 336 LKNLDDSVDDEKLKEMF--SEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 343 GKV 335
GK+
Sbjct: 394 GKM 396
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana
GN=PAB5 PE=1 SV=2
Length = 668
Score = 66 bits (160), Expect = 4e-010
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 7/168 (4%)
Frame = -3
Query: 823 LFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKFD 644
++V NLP ++ +++ FG+ G + S ++K + G +R F FV S E A AVEK +
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 643 SFQVSGRIIRVNFARKFKKPPKPLPPSATSSPGETRHK-----LYVSNLAWKARSTHLRE 479
+ ++ V A+K + L K LY+ NL L+E
Sbjct: 287 GISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKE 346
Query: 478 FFTAADFNLVSARVVFADPGGRASGYGFVSFITREEAEDAIFKLDGKV 335
F +++ V++ V + G + G+GFV++ EEA A+ +++GK+
Sbjct: 347 MF--SEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKM 392
>sp|P37838|NOP4_YEAST Nucleolar protein 4 OS=Saccharomyces cerevisiae GN=NOP4
PE=1 SV=1
Length = 685
Score = 57 bits (137), Expect = 2e-007
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = -3
Query: 832 KRKLFVFNLPWS-MSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAV 656
K KL + N+PWS + +FG+ GTV+ I +++DGK GFAFVTM + A+
Sbjct: 146 KPKLIIRNMPWSCRDPVKLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTMKKISNCRIAL 205
Query: 655 EKFDSFQVSGRIIRVNFA 602
E ++ GR + V+FA
Sbjct: 206 ENTKDLKIDGRKVAVDFA 223
>sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1
SV=3
Length = 750
Score = 57 bits (137), Expect = 2e-007
Identities = 33/97 (34%), Positives = 52/97 (53%)
Frame = -3
Query: 892 EEETSLTDEKTEETTQTTNLKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGK 713
E S E + + + K +L + NL + S +D+ +F GTVL V I K+ DGK
Sbjct: 93 ENAESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGK 152
Query: 712 NRGFAFVTMSSGEEAQSAVEKFDSFQVSGRIIRVNFA 602
RGFAFV + EA A++ + ++ GR + V++A
Sbjct: 153 MRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWA 189
>sp|Q6CEW9|MRD1_YARLI Multiple RNA-binding domain-containing protein 1
OS=Yarrowia lipolytica GN=MRD1 PE=3 SV=1
Length = 828
Score = 55 bits (131), Expect = 8e-007
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = -3
Query: 859 EETTQTTN-LKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMS 683
EETT+T + K+ + NLP+ + D+ LFG G++ +V + K+ + ++RGFAF
Sbjct: 692 EETTETKKAIDSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKFNSESRGFAFAEYV 751
Query: 682 SGEEAQSAVEKFDSFQVSGRIIRVNFAR 599
S +EA+ A+ + GR + + +A+
Sbjct: 752 SAKEAEHAMSALQGTHLLGRRLVLQYAQ 779
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05
OS=Schizosaccharomyces pombe GN=SPAC328.05 PE=2 SV=2
Length = 468
Score = 55 bits (131), Expect = 8e-007
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = -3
Query: 823 LFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKFD 644
++V NLPW+ S ++ +LF G+V+ I + G+++GF V + +A S++EK +
Sbjct: 316 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 375
Query: 643 SFQVSGRIIRVNFARKFKKPPKPLPPSATS 554
++ GR +++++A P P P+ S
Sbjct: 376 GYRYGGRPLQLSYAH--YATPLPAVPTVLS 403
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660
OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1
Length = 609
Score = 54 bits (127), Expect = 2e-006
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Frame = -3
Query: 895 AEEETSLTD---EKTEETTQTTNLKRKLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQ 725
AE E L + EK EE + ++V N+ +++ ++ F QCGT+ S +++
Sbjct: 280 AEREQLLREQFKEKHEEQKMIAKVS-NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD 338
Query: 724 KDGKNRGFAFVTMSSGEEAQSAVEKFDSFQVSGRIIRVNFARK 596
+ GK++GF FV S+ EEA AV+ F G+ + V A+K
Sbjct: 339 EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQK 381
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19
PE=1 SV=2
Length = 960
Score = 53 bits (125), Expect = 4e-006
Identities = 31/84 (36%), Positives = 39/84 (46%)
Frame = -3
Query: 826 KLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKF 647
+L V NLP M LF GT+ + KDGK R F F+ S EEAQ A + F
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHF 62
Query: 646 DSFQVSGRIIRVNFARKFKKPPKP 575
+ + I V F + F P KP
Sbjct: 63 NKSFIDTSRITVEFCKSFGDPAKP 86
>sp|Q8R3C6|RBM19_MOUSE Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19
PE=1 SV=1
Length = 952
Score = 53 bits (125), Expect = 4e-006
Identities = 31/84 (36%), Positives = 39/84 (46%)
Frame = -3
Query: 826 KLFVFNLPWSMSVNDISNLFGQCGTVLSVEIIKQKDGKNRGFAFVTMSSGEEAQSAVEKF 647
+L V NLP M LF GT+ + KDGK R F F+ S EEAQ+A+ F
Sbjct: 3 RLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQAALNHF 62
Query: 646 DSFQVSGRIIRVNFARKFKKPPKP 575
+ I V F + F P KP
Sbjct: 63 HRSFIDTTRITVEFCKSFGDPSKP 86
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 185,567,659,578
Number of Sequences: 518415
Number of Extensions: 185567659578
Number of Successful Extensions: 1125298771
Number of sequences better than 0.0: 0
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