BLASTX 7.6.2
Query= UN49853 /QuerySize=1021
(1020 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G43190.1 | Symbols: | polypyrimidine tract-bi... 413 9e-116
TAIR9_protein||AT1G43190.2 | Symbols: | polypyrimidine tract-bi... 413 9e-116
TAIR9_protein||AT1G43190.3 | Symbols: | polypyrimidine tract-bi... 413 9e-116
TAIR9_protein||AT5G53180.1 | Symbols: ATPTB2, PTB2 | PTB2 (POLYP... 49 4e-006
>TAIR9_protein||AT1G43190.1 | Symbols: | polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein, putative |
chr1:16275432-16278185 REVERSE
Length = 433
Score = 413 bits (1061), Expect = 9e-116
Identities = 200/215 (93%), Positives = 208/215 (96%)
Frame = -1
Query: 852 QMQDVSSAITAFGGGLPPGITGTNDRCTILVSNLNTDSVDEDKLFNLFSLYGNIVRIKLL 673
QM + S+ AFGGGLPPGITGTNDRCT+LVSNLN DS+DEDKLFNLFSLYGNIVRIKLL
Sbjct: 219 QMANTSAIAAAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLL 278
Query: 672 RNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNYSKHPNITPGTDSHDYVNSNLNR 493
RNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVN+SKHPNITPGTDSHDYVNSNLNR
Sbjct: 279 RNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNR 338
Query: 492 FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVVNHVQEHGAILNTKVFEMNGKKQALVQ 313
FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEV+NHVQEHGA++NTKVFEMNGKKQALVQ
Sbjct: 339 FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQ 398
Query: 312 FENEEEAAEALVCKHATSLGGSIIRISFSQLQTI* 208
FENEEEAAEALVCKHATSLGGSIIRISFSQLQTI*
Sbjct: 399 FENEEEAAEALVCKHATSLGGSIIRISFSQLQTI* 433
Score = 111 bits (276), Expect = 1e-024
Identities = 59/72 (81%), Positives = 63/72 (87%), Gaps = 2/72 (2%)
Frame = -1
Query: 990 MAESSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAITA--F 817
MAESSKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSA++A F
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 816 GGGLPPGITGTN 781
+ P I G N
Sbjct: 61 FTNVQPTIRGRN 72
>TAIR9_protein||AT1G43190.2 | Symbols: | polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein, putative |
chr1:16275432-16278185 REVERSE
Length = 433
Score = 413 bits (1061), Expect = 9e-116
Identities = 200/215 (93%), Positives = 208/215 (96%)
Frame = -1
Query: 852 QMQDVSSAITAFGGGLPPGITGTNDRCTILVSNLNTDSVDEDKLFNLFSLYGNIVRIKLL 673
QM + S+ AFGGGLPPGITGTNDRCT+LVSNLN DS+DEDKLFNLFSLYGNIVRIKLL
Sbjct: 219 QMANTSAIAAAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLL 278
Query: 672 RNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNYSKHPNITPGTDSHDYVNSNLNR 493
RNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVN+SKHPNITPGTDSHDYVNSNLNR
Sbjct: 279 RNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNR 338
Query: 492 FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVVNHVQEHGAILNTKVFEMNGKKQALVQ 313
FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEV+NHVQEHGA++NTKVFEMNGKKQALVQ
Sbjct: 339 FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQ 398
Query: 312 FENEEEAAEALVCKHATSLGGSIIRISFSQLQTI* 208
FENEEEAAEALVCKHATSLGGSIIRISFSQLQTI*
Sbjct: 399 FENEEEAAEALVCKHATSLGGSIIRISFSQLQTI* 433
Score = 111 bits (276), Expect = 1e-024
Identities = 59/72 (81%), Positives = 63/72 (87%), Gaps = 2/72 (2%)
Frame = -1
Query: 990 MAESSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAITA--F 817
MAESSKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSA++A F
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 816 GGGLPPGITGTN 781
+ P I G N
Sbjct: 61 FTNVQPTIRGRN 72
>TAIR9_protein||AT1G43190.3 | Symbols: | polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein, putative |
chr1:16275432-16278185 REVERSE
Length = 431
Score = 413 bits (1061), Expect = 9e-116
Identities = 200/215 (93%), Positives = 208/215 (96%)
Frame = -1
Query: 852 QMQDVSSAITAFGGGLPPGITGTNDRCTILVSNLNTDSVDEDKLFNLFSLYGNIVRIKLL 673
QM + S+ AFGGGLPPGITGTNDRCT+LVSNLN DS+DEDKLFNLFSLYGNIVRIKLL
Sbjct: 217 QMANTSAIAAAFGGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLL 276
Query: 672 RNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNYSKHPNITPGTDSHDYVNSNLNR 493
RNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVN+SKHPNITPGTDSHDYVNSNLNR
Sbjct: 277 RNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNR 336
Query: 492 FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVVNHVQEHGAILNTKVFEMNGKKQALVQ 313
FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEV+NHVQEHGA++NTKVFEMNGKKQALVQ
Sbjct: 337 FNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQ 396
Query: 312 FENEEEAAEALVCKHATSLGGSIIRISFSQLQTI* 208
FENEEEAAEALVCKHATSLGGSIIRISFSQLQTI*
Sbjct: 397 FENEEEAAEALVCKHATSLGGSIIRISFSQLQTI* 431
Score = 108 bits (269), Expect = 6e-024
Identities = 54/57 (94%), Positives = 57/57 (100%)
Frame = -1
Query: 990 MAESSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAITA 820
MAESSKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSA++A
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSA 57
>TAIR9_protein||AT5G53180.1 | Symbols: ATPTB2, PTB2 | PTB2 (POLYPYRIMIDINE
TRACT-BINDING PROTEIN 2); RNA binding / nucleic acid binding /
nucleotide binding | chr5:21568393-21571537 REVERSE
Length = 430
Score = 49 bits (116), Expect = 4e-006
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Frame = -1
Query: 468 YRYCCSPTKMIHLSTLPQDVTEEEVVNHVQEHGAILNTKVFEMNGKKQALVQFENEEEAA 289
+RY P+K++HL LP + TEEE++ + G ++NTK + QA ++FE+ +A
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69
Query: 288 EALVCKHATS-----LGGSIIRISFSQLQTI 211
+ ++ +A+S + G + + +S Q I
Sbjct: 70 Q-MISYYASSSEPAQVRGKTVYLQYSNRQEI 99
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,698,091,651
Number of Sequences: 33410
Number of Extensions: 23698091651
Number of Successful Extensions: 745489739
Number of sequences better than 0.0: 0
|
