BLASTX 7.6.2
Query= UN50033 /QuerySize=1296
(1295 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT3G55460.1 | Symbols: SCL30 | SCL30; RNA binding... 373 1e-103
TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA bindi... 178 9e-045
TAIR9_protein||AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33 | SR3... 170 2e-042
TAIR9_protein||AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33 | SR3... 169 3e-042
TAIR9_protein||AT5G18810.1 | Symbols: SCL28 | SCL28; RNA binding... 155 6e-038
TAIR9_protein||AT3G49430.1 | Symbols: SRp34a | SRp34a (Ser/Arg-r... 93 4e-019
TAIR9_protein||AT5G64200.1 | Symbols: ATSC35, SC35 | ATSC35; RNA... 88 1e-017
TAIR9_protein||AT5G64200.2 | Symbols: ATSC35, SC35 | ATSC35; RNA... 88 1e-017
TAIR9_protein||AT3G49430.2 | Symbols: SRp34a | SRp34a (Ser/Arg-r... 80 2e-015
TAIR9_protein||AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 72 5e-013
TAIR9_protein||AT2G21440.1 | Symbols: | RNA recognition motif (... 70 3e-012
TAIR9_protein||AT4G02430.2 | Symbols: | pre-mRNA splicing facto... 65 6e-011
TAIR9_protein||AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 62 5e-010
TAIR9_protein||AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34 | SR1;... 56 4e-008
TAIR9_protein||AT3G06480.1 | Symbols: | DEAD box RNA helicase, ... 52 7e-007
TAIR9_protein||AT3G54230.1 | Symbols: | nucleic acid binding / ... 49 5e-006
TAIR9_protein||AT5G09880.1 | Symbols: | RNA recognition motif (... 49 6e-006
>TAIR9_protein||AT3G55460.1 | Symbols: SCL30 | SCL30; RNA binding / nucleic acid
binding / nucleotide binding | chr3:20561024-20563502 FORWARD
Length = 263
Score = 373 bits (957), Expect = 1e-103
Identities = 194/248 (78%), Positives = 198/248 (79%), Gaps = 14/248 (5%)
Frame = -2
Query: 1210 RRYSPPYYSPPRRGYGGRGRS-PPPPPRRGYGGGGGGGGRKGSSHGSLLVRNVPLDCRPE 1034
RRYSPPYYSPPRRGYGGRGRS PPPPPRRGYGGGGGGGGR+GSSHGSLLVRN+PLDCRPE
Sbjct: 2 RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61
Query: 1033 ELRVPFERFGPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVFGGREITVV 854
ELR PFERFGPVRDVYIPRDYYSG+PRGFAFVEFVDAYDAGEAQRSMNRR F GREITVV
Sbjct: 62 ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121
Query: 853 VASESRKRPEEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSY 674
VASESRKRPEEMRVKTRTRSREPSGSR RSHGRSRSRSISRSRSPRRPSDSRSR RSRSY
Sbjct: 122 VASESRKRPEEMRVKTRTRSREPSGSRDRSHGRSRSRSISRSRSPRRPSDSRSRYRSRSY 181
Query: 673 SPAPRRRGADYSASPRRRQEERPRSP------LRSPPRGEGDAKYSRRSYSPGYEGAATA 512
SPAPRRRG R SP +P R R PGYE
Sbjct: 182 SPAPRRRGGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGDNEIRE--KPGYE----- 234
Query: 511 AEDRDTNG 488
AEDR G
Sbjct: 235 AEDRRRGG 242
Score = 94 bits (233), Expect = 1e-019
Identities = 64/125 (51%), Positives = 70/125 (56%), Gaps = 19/125 (15%)
Frame = -2
Query: 823 EMRVKTRTRSRE-PSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSP------A 665
E+ V + SR+ P R ++ RSR S SR RS R SRSR SRS SP
Sbjct: 117 EITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHGR---SRSRSISRSRSPRRPSDSR 173
Query: 664 PRRRGADYSASPRRRQEERPRSPLRSPPRGEGDAKYSRRSYSPGYEGAATAAEDRDTNGD 485
R R YS +PRRR PPRGE D YSRRSYSPGYEGAA AA DRD NGD
Sbjct: 174 SRYRSRSYSPAPRRR---------GGPPRGEEDENYSRRSYSPGYEGAAAAAPDRDRNGD 224
Query: 484 NETRE 470
NE RE
Sbjct: 225 NEIRE 229
Score = 59 bits (142), Expect = 5e-009
Identities = 28/34 (82%), Positives = 29/34 (85%)
Frame = -3
Query: 381 KPDYEPEERRRGGREVSRSPSGSRSRSVEASPR* 280
KP YE E+RRRGGR VSRSPSGSRSRSVE SPR*
Sbjct: 230 KPGYEAEDRRRGGRAVSRSPSGSRSRSVEVSPR* 263
>TAIR9_protein||AT3G13570.1 | Symbols: SCL30A | SCL30a; RNA binding / nucleic
acid binding / nucleotide binding | chr3:4429564-4431602 REVERSE
Length = 263
Score = 178 bits (450), Expect = 9e-045
Identities = 108/218 (49%), Positives = 132/218 (60%), Gaps = 19/218 (8%)
Frame = -2
Query: 1186 SPPRRGYGGRGRSPPPPPRRGYGGGGGGGGRKGSSHGSLLVRNVPLDCRPEELRVPFERF 1007
SPP RGYG RGRSP P G GG R SLLVRN+ DCR E+LR PFE+F
Sbjct: 9 SPP-RGYGRRGRSPSP-------RGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60
Query: 1006 GPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVFGGREITVVVASESRKRP 827
GPV+D+Y+PRDYY+G+PRGF F++F+D DA EA+ M+ + GRE+TVV A E+RK+P
Sbjct: 61 GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120
Query: 826 EEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGA 647
EM RTR R +R + RS R SRS PRR RSR RSR Y+ P +R
Sbjct: 121 TEM----RTRDRGGRSNRFQDRRRSPPR-YSRSPPPRR--GRRSRSRSRGYNSPPAKRHQ 173
Query: 646 DYSASPRRRQEERPRSPLRSPPRGEGDAKYSRRSYSPG 533
S SP+ R+ E+ RS RSPP RS SPG
Sbjct: 174 SRSVSPQDRRYEKERSYSRSPPHNGSRV----RSGSPG 207
>TAIR9_protein||AT1G55310.2 | Symbols: SR33, ATSCL33, SCL33 | SR33; RNA binding
/ protein binding | chr1:20630676-20632567 FORWARD
Length = 221
Score = 170 bits (430), Expect = 2e-042
Identities = 106/226 (46%), Positives = 128/226 (56%), Gaps = 21/226 (9%)
Frame = -2
Query: 1180 PRRGYGGRGRSPPPPPRRGYGGGGGGGGRKGSSHGSLLVRNVPLDCRPEELRVPFERFGP 1001
P RGYG RGRSP P G GGR SLLVRN+ DCR E+LR FE+FGP
Sbjct: 10 PPRGYGRRGRSPSP--------RGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGP 61
Query: 1000 VRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVFGGREITVVVASESRKRPEE 821
V+D+Y+PRDYY+G+PRGF FV+F+D DA +A+ M+ + GRE+TVV A E+RK+P E
Sbjct: 62 VKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTE 121
Query: 820 MRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADY 641
M R+RE G R R R+ R SRSRSP P RSR RS Y P RR
Sbjct: 122 M------RARERGGGRFRDRRRTPPRYYSRSRSP-PPRRGRSRSRSGDYYSPPPRRHHPR 174
Query: 640 SASPRRRQEERPRSPLRSPP------RGEGDAKYSRRSYSPGYEGA 521
S SPR + + RS RSP R + RS SP E A
Sbjct: 175 SISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPTQEEA 220
>TAIR9_protein||AT1G55310.1 | Symbols: SR33, ATSCL33, SCL33 | SR33; RNA binding
/ protein binding | chr1:20630676-20632695 FORWARD
Length = 288
Score = 169 bits (428), Expect = 3e-042
Identities = 99/199 (49%), Positives = 120/199 (60%), Gaps = 15/199 (7%)
Frame = -2
Query: 1180 PRRGYGGRGRSPPPPPRRGYGGGGGGGGRKGSSHGSLLVRNVPLDCRPEELRVPFERFGP 1001
P RGYG RGRSP P G GGR SLLVRN+ DCR E+LR FE+FGP
Sbjct: 10 PPRGYGRRGRSPSP--------RGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGP 61
Query: 1000 VRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVFGGREITVVVASESRKRPEE 821
V+D+Y+PRDYY+G+PRGF FV+F+D DA +A+ M+ + GRE+TVV A E+RK+P E
Sbjct: 62 VKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTE 121
Query: 820 MRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADY 641
M R+RE G R R R+ R SRSRSP P RSR RS Y P RR
Sbjct: 122 M------RARERGGGRFRDRRRTPPRYYSRSRSP-PPRRGRSRSRSGDYYSPPPRRHHPR 174
Query: 640 SASPRRRQEERPRSPLRSP 584
S SPR + + RS RSP
Sbjct: 175 SISPREERYDGRRSYSRSP 193
>TAIR9_protein||AT5G18810.1 | Symbols: SCL28 | SCL28; RNA binding / nucleic acid
binding / nucleotide binding | chr5:6268925-6271158 REVERSE
Length = 237
Score = 155 bits (391), Expect = 6e-038
Identities = 93/205 (45%), Positives = 114/205 (55%), Gaps = 9/205 (4%)
Frame = -2
Query: 1174 RGYGGRGRS-PPPPPRRGYGGG-----GGGGGRKGSSHGSLLVRNVPLDCRPEELRVPFE 1013
R Y R R PP R+GY + S LL+RN+PLD RP +LR FE
Sbjct: 9 RSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFE 68
Query: 1012 RFGPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVFGGREITVVVASESRK 833
RFGP++D+Y+PR+YY+GEPRGF FV++ A DA EA + MN +V GGREI +V A E+RK
Sbjct: 69 RFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEENRK 128
Query: 832 RPEEMRVKTRTRSREPSGSR-GRSHGRSRSRSISRSRS-PRRPSDSRSRRRSRSYSPAPR 659
P+EMR T R R R R RS SRSRS PRR S R YSP R
Sbjct: 129 TPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKVREDDLYSPRRR 188
Query: 658 RRGADYSASPRRRQEERPRSPLRSP 584
R S PR +E + R+ RSP
Sbjct: 189 SRSISRSPLPRNEREYKSRN-CRSP 212
>TAIR9_protein||AT3G49430.1 | Symbols: SRp34a | SRp34a (Ser/Arg-rich protein
34a); RNA binding / nucleic acid binding / nucleotide binding |
chr3:18332668-18334829 FORWARD
Length = 301
Score = 93 bits (229), Expect = 4e-019
Identities = 77/218 (35%), Positives = 105/218 (48%), Gaps = 27/218 (12%)
Frame = -2
Query: 1186 SPPRRGYGGRGRSPPPPPRRGYGGGGGGGG--RKGSSHGS---LLVRNVPLDCRPEELRV 1022
S R GYGG G GYGGGGGGGG R G S S ++VR +P ++L+
Sbjct: 89 SDRRGGYGGGG--------SGYGGGGGGGGSARFGVSRHSEFRVIVRGLPSSASWQDLKD 140
Query: 1021 PFERFGPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVF---GGREITVVV 851
+ G V + RD + V++ + D A R ++ F R V
Sbjct: 141 HMRKAGDVCFAEVTRD----SDGTYGVVDYTNYDDMKYAIRKLDDTEFRNPWARGFIRVK 196
Query: 850 ASESRKRPEEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRR-----PSDSRSRRR 686
ES + ++R+RSR S SRGR SRSRS+SRS+SPR+ P S SR
Sbjct: 197 KYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSI 256
Query: 685 SRSYSPAPRRRGADYSASPR--RRQEERPRSPLRSPPR 578
S+S SP+P ++ + A R R R RSP +SPP+
Sbjct: 257 SKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPK 294
>TAIR9_protein||AT5G64200.1 | Symbols: ATSC35, SC35 | ATSC35; RNA binding /
nucleic acid binding / nucleotide binding | chr5:25681849-25683553
REVERSE
Length = 304
Score = 88 bits (216), Expect = 1e-017
Identities = 72/180 (40%), Positives = 87/180 (48%), Gaps = 12/180 (6%)
Frame = -2
Query: 1099 GRKG----SSHGSLLVRNVPLDCRPEELRVPFERFGPVRDVYIPRDYYSGEPRGFAFVEF 932
GR G S SLLV N+ ++L F ++G V DV+IPRD +G+ RGFAFV +
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 931 VDAYDAGEAQRSMNRRVFGGREITVVVASESRKRPEEMRVKTRTRSREPSGSRGRSHGRS 752
+A +A ++ RV GREITV A E K R P R RS
Sbjct: 65 KYKDEAHKAVERLDGRVVDGREITVQFAKYGPN--AEKISKGRVVEPPPKSRRSRSRSPR 122
Query: 751 RSRSISRSRSP---RRPSDSRS-RRRSRS--YSPAPRRRGADYSASPRRRQEERPRSPLR 590
RSRS RSRSP R P SRS RRRSR R+R S R R EE+ R R
Sbjct: 123 RSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDHRR 182
>TAIR9_protein||AT5G64200.2 | Symbols: ATSC35, SC35 | ATSC35; RNA binding /
nucleic acid binding / nucleotide binding | chr5:25681849-25683553
REVERSE
Length = 304
Score = 88 bits (216), Expect = 1e-017
Identities = 72/180 (40%), Positives = 87/180 (48%), Gaps = 12/180 (6%)
Frame = -2
Query: 1099 GRKG----SSHGSLLVRNVPLDCRPEELRVPFERFGPVRDVYIPRDYYSGEPRGFAFVEF 932
GR G S SLLV N+ ++L F ++G V DV+IPRD +G+ RGFAFV +
Sbjct: 5 GRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRY 64
Query: 931 VDAYDAGEAQRSMNRRVFGGREITVVVASESRKRPEEMRVKTRTRSREPSGSRGRSHGRS 752
+A +A ++ RV GREITV A E K R P R RS
Sbjct: 65 KYKDEAHKAVERLDGRVVDGREITVQFAKYGPN--AEKISKGRVVEPPPKSRRSRSRSPR 122
Query: 751 RSRSISRSRSP---RRPSDSRS-RRRSRS--YSPAPRRRGADYSASPRRRQEERPRSPLR 590
RSRS RSRSP R P SRS RRRSR R+R S R R EE+ R R
Sbjct: 123 RSRSPRRSRSPPRRRSPRRSRSPRRRSRDDYREKDYRKRSRSRSYDRRERHEEKDRDHRR 182
>TAIR9_protein||AT3G49430.2 | Symbols: SRp34a | SRp34a (Ser/Arg-rich protein
34a); RNA binding / nucleic acid binding / nucleotide binding |
chr3:18332668-18334617 FORWARD
Length = 298
Score = 80 bits (197), Expect = 2e-015
Identities = 67/191 (35%), Positives = 92/191 (48%), Gaps = 25/191 (13%)
Frame = -2
Query: 1186 SPPRRGYGGRGRSPPPPPRRGYGGGGGGGG--RKGSSHGS---LLVRNVPLDCRPEELRV 1022
S R GYGG G GYGGGGGGGG R G S S ++VR +P ++L+
Sbjct: 89 SDRRGGYGGGG--------SGYGGGGGGGGSARFGVSRHSEFRVIVRGLPSSASWQDLKD 140
Query: 1021 PFERFGPVRDVYIPRDYYSGEPRGFAFVEFVDAYDAGEAQRSMNRRVF---GGREITVVV 851
+ G V + RD + V++ + D A R ++ F R V
Sbjct: 141 HMRKAGDVCFAEVTRD----SDGTYGVVDYTNYDDMKYAIRKLDDTEFRNPWARGFIRVK 196
Query: 850 ASESRKRPEEMRVKTRTRSREPSGSRGRSHGRSRSRSISRSRSPRR-----PSDSRSRRR 686
ES + ++R+RSR S SRGR SRSRS+SRS+SPR+ P S SR
Sbjct: 197 KYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSPRKDLSKSPRRSLSRSI 256
Query: 685 SRSYSPAPRRR 653
S+S SP+P ++
Sbjct: 257 SKSRSPSPDKK 267
>TAIR9_protein||AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-629583 FORWARD
Length = 304
Score = 72 bits (176), Expect = 5e-013
Identities = 73/217 (33%), Positives = 95/217 (43%), Gaps = 22/217 (10%)
Frame = -2
Query: 1156 GRSPPPPPRRGYGGGGGGGGRKGSSHGS----------LLVRNVPLDCRPEELRVPFERF 1007
GR R + GGG GGGR GS +LV +P ++L+ +
Sbjct: 83 GRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKG 142
Query: 1006 GPVRDVYIPRDYYSGEPRG-FAFVEFVDAYDAGEAQRSMNRRVFGGREITVVVASESRKR 830
G V + RD RG V++ D A + ++ F V
Sbjct: 143 GDVCFSQVYRD-----ARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDS 197
Query: 829 PEEMRVKTRTR--SREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRR 656
++ R +R R S+ S SRGRS RSRSRS SRSRSP+ S RS +S S SP PR
Sbjct: 198 RKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRS 257
Query: 655 RGADYSASPRRRQEERPRSPLRSPPRGEGDAKYSRRS 545
+ S SP RR R RSPL S + EG S+ S
Sbjct: 258 KSR--SPSP-RRSRSRSRSPLPSVQK-EGSKSPSKPS 290
>TAIR9_protein||AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9173712-9179065 REVERSE
Length = 1004
Score = 70 bits (169), Expect = 3e-012
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Frame = -2
Query: 1108 GGGGRKGSSHGSLLVRNVPLDCRPEELRVPFERFGPVRDVYIPRDYYSGEPRGFAFVEFV 929
GG G K + L++RN+P +P +++V F G V DV+IP+++ +G P+GFAFV+F
Sbjct: 322 GGEGSK-AQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFT 380
Query: 928 DAYDAGEAQRSMNRRVFGGREITVVVASESRKRPEEMRVKTRTRSREPSGSRGRSHGRS 752
DA A + N +FG R I V A T + + GS G S S
Sbjct: 381 CKKDAANAIKKFNGHMFGKRPIAVDWAVPKNIYNGAADATTASADGDKEGSDGDSENSS 439
Score = 56 bits (133), Expect = 5e-008
Identities = 46/167 (27%), Positives = 67/167 (40%), Gaps = 6/167 (3%)
Frame = -2
Query: 1099 GRKGSSH--GSLLVRNVPLDCRPEELRVPFERFGPVRDVYIPRDYYSGEPRGFAFVEFVD 926
G + S H ++ V +P +L F GPVR ++ + S E RGFAFV+F
Sbjct: 11 GEEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFAL 70
Query: 925 AYDAGEAQRSMNRRVFGGREITVVVASESRKRPEEMRVKTRTRSREPSGSRGRSHGRSRS 746
D A N GGR ITV A+ R +E R K P S+G+S +
Sbjct: 71 QEDVNRAIELKNGSTVGGRRITVKQAAH-RPSLQERRTKAAEGISVPDNSQGQSDKDTSI 129
Query: 745 RSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPRRRQEERP 605
SP + R + P R++ R++ E+P
Sbjct: 130 PETDEKVSPPEKKLEKPVERKKVEKPIERKQ---VEKPVERKKAEKP 173
>TAIR9_protein||AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative /
SR1 protein, putative | chr4:1069186-1071313 FORWARD
Length = 279
Score = 65 bits (158), Expect = 6e-011
Identities = 63/175 (36%), Positives = 80/175 (45%), Gaps = 14/175 (8%)
Frame = -2
Query: 1132 RRGYGGGGGGGGRKGSSHGS---LLVRNVPLDCRPEELRVPFERFGPVRDVYIPRDYYSG 962
R G GGG GGG +G S S ++V +P ++L+ + G V + RD
Sbjct: 99 RGGRGGGDGGGRERGPSRRSEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRD---- 154
Query: 961 EPRG-FAFVEFVDAYDAGEAQRSMNRRVFGGREITVVVASESRKRPEEMRVKTRTRSREP 785
RG V++ D A R E V +SR+ + R +R RS
Sbjct: 155 -GRGTTGIVDYTSYEDMKYALDDTEFRNAFSHEYVRVREYDSRR---DSRSPSRGRSYSK 210
Query: 784 SGSRGRSHGRSRSRSISR--SRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPR 626
S SRGRS RSRSRS SR SRSP+ S RS +S S SP R R S SPR
Sbjct: 211 SRSRGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKSTSRSPRSRSRSKSRSLSPR 265
>TAIR9_protein||AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-629583 FORWARD
Length = 304
Score = 62 bits (150), Expect = 5e-010
Identities = 44/87 (50%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Frame = -2
Query: 805 RTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPR 626
R+ S+ S SRGRS RSRSRS SRSRSP+ S RS +S S SP PR + S SP
Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR--SPSP- 264
Query: 625 RRQEERPRSPLRSPPRGEGDAKYSRRS 545
RR R RSPL S + EG S+ S
Sbjct: 265 RRSRSRSRSPLPSVQK-EGSKSPSKPS 290
>TAIR9_protein||AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34 | SR1; RNA binding /
nucleic acid binding / nucleotide binding | chr1:626918-628995 FORWARD
Length = 286
Score = 56 bits (134), Expect = 4e-008
Identities = 34/61 (55%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = -2
Query: 805 RTRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRSYSPAPRRRGADYSASPR 626
R+ S+ S SRGRS RSRSRS SRSRSP+ S RS +S S SP PR + S SPR
Sbjct: 208 RSYSKSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSR--SPSPR 265
Query: 625 R 623
R
Sbjct: 266 R 266
>TAIR9_protein||AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:1985697-1989666 REVERSE
Length = 1089
Score = 52 bits (123), Expect = 7e-007
Identities = 34/65 (52%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Frame = -2
Query: 841 SRKR-PEEMRVKTR----TRSREPSGSRGRSHGRSRSRSISRSRSPRRPSDSRSRRRSRS 677
SR R P+ +R + R +RSR SGS RS RSRS S SRSRSPR D RSRS
Sbjct: 954 SRSRSPDLVRPRRRSSSYSRSRSRSGSYSRSRSRSRSWSRSRSRSPRHSRDRGGHNRSRS 1013
Query: 676 YSPAP 662
YS +P
Sbjct: 1014 YSRSP 1018
>TAIR9_protein||AT3G54230.1 | Symbols: | nucleic acid binding / nucleotide
binding / zinc ion binding | chr3:20073872-20080142 FORWARD
Length = 1008
Score = 49 bits (116), Expect = 5e-006
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 1135 PRRGYGGGGGGGGRKGSSHGS---LLVRNVPLDCRPEELRVPFERFGPVRDVYIPRDYYS 965
P G G++ S G L+VR + D E LR F + P++D+ + RD ++
Sbjct: 410 PSADVGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFT 469
Query: 964 GEPRGFAFVEFVDAYDAGEAQRSMNR 887
RGFAFV F DA +A + NR
Sbjct: 470 HVSRGFAFVHFYSVEDATKALEATNR 495
>TAIR9_protein||AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3081646-3085179 REVERSE
Length = 528
Score = 49 bits (115), Expect = 6e-006
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = -2
Query: 1099 GRKGSSHGSLLVRNVPLDCRPEELRVPFERFGPVRDVYIPRDYYSGEPRGFAFVEFVDAY 920
G G + L V N+ + +LR FE FGPV V +P D +G+ +GF F++FV
Sbjct: 258 GGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLE 317
Query: 919 DAGEAQRSMNRRV-FGGREITVVVASE 842
+ AQ ++N ++ GR I V S+
Sbjct: 318 HSKAAQIALNGKLEIAGRTIKVSSVSD 344
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,739,744,934
Number of Sequences: 33410
Number of Extensions: 23739744934
Number of Successful Extensions: 745506947
Number of sequences better than 0.0: 0
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