BLASTX 7.6.2
Query= UN50843 /QuerySize=960
(959 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G53330.1 | Symbols: | FUNCTIONS IN: molecular... 299 3e-081
TAIR9_protein||AT1G62440.1 | Symbols: LRX2 | LRX2 (LEUCINE-RICH ... 49 4e-006
>TAIR9_protein||AT5G53330.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Ubiquitin-associated/translation elongation factor EF1B, N-terminal,
eukaryote (InterPro:IPR015940); Has 28 Blast hits to 28 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 2; Plants -
15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:21639236-21640716 FORWARD
Length = 222
Score = 299 bits (763), Expect = 3e-081
Identities = 163/225 (72%), Positives = 177/225 (78%), Gaps = 20/225 (8%)
Frame = +1
Query: 115 MDYDFRNKS-GPSYGRPMY--PSPSPSSMYTGPP-GYPKIG---GGQPFFPPPPERTPSF 273
MDYD+RNKS GPSY RPMY PS SPS P GYPKIG G P F PPER SF
Sbjct: 1 MDYDYRNKSGGPSYPRPMYGPPSTSPSPSSNHPMYGYPKIGQQTGPGPQFFSPPERNSSF 60
Query: 274 QHNPS-SSGLGIKVTLKPDYRITPPPPLLPRVGDVPRSSFQFDFGLERKVLAEAEKDNPD 450
QHN S SSG+GI+V LKP+YRITPPP LLPRVGD+ RSSFQFDFGLERKVLAEAEKDNPD
Sbjct: 61 QHNTSPSSGIGIRVNLKPEYRITPPPQLLPRVGDIHRSSFQFDFGLERKVLAEAEKDNPD 120
Query: 451 WSKFGSDHPPPPPPPANFSQPPPANFAQPPPAHSMGVDPVVMKY--AGLNREAVNIAVAN 624
WSKFGS++ PPA F +P P++ Q GVD VVMKY +GLNREAVNIAVAN
Sbjct: 121 WSKFGSEN-----PPAKFHEPSPSSVGQ-----MQGVDHVVMKYTASGLNREAVNIAVAN 170
Query: 625 YGDNPTKVHEFANGFSAIREMGFPTNAVADALFMFENDTEKALSH 759
YGDNPTKV EFANGF+AIREMGFPTNAVADALFMFENDT+KAL+H
Sbjct: 171 YGDNPTKVQEFANGFTAIREMGFPTNAVADALFMFENDTDKALAH 215
Score = 147 bits (369), Expect = 1e-035
Identities = 75/97 (77%), Positives = 82/97 (84%), Gaps = 5/97 (5%)
Frame = +1
Query: 505 SQPPPANFAQPPPA---HSMGVDPVVMKY--AGLNREAVNIAVANYGDNPTKVHEFANGF 669
S+ PPA F +P P+ GVD VVMKY +GLNREAVNIAVANYGDNPTKV EFANGF
Sbjct: 126 SENPPAKFHEPSPSSVGQMQGVDHVVMKYTASGLNREAVNIAVANYGDNPTKVQEFANGF 185
Query: 670 SAIREMGFPTNAVADALFMFENDTEKALSHLLHGSS* 780
+AIREMGFPTNAVADALFMFENDT+KAL+HLLHGSS*
Sbjct: 186 TAIREMGFPTNAVADALFMFENDTDKALAHLLHGSS* 222
>TAIR9_protein||AT1G62440.1 | Symbols: LRX2 | LRX2 (LEUCINE-RICH REPEAT/EXTENSIN
2); protein binding / structural constituent of cell wall |
chr1:23111818-23115293 FORWARD
Length = 827
Score = 49 bits (115), Expect = 4e-006
Identities = 42/143 (29%), Positives = 58/143 (40%), Gaps = 21/143 (14%)
Frame = +1
Query: 169 PSPSPSSMYTGPPGYPKIGGGQPFFPPPPERTPSFQHNPSSSGLGIKVTLKPDYRITPPP 348
P P PSS + P P PP + +PSF+ P + P +R TPPP
Sbjct: 440 PPPPPSSKMS-----PTFRATPP--PPSSKMSPSFRATPPPP----SSKMSPSFRATPPP 488
Query: 349 P---LLPRVGDVPRSSFQFDFGLERKVLAEAEKDNPDWSKFG-----SDHPPPPPPPANF 504
P + P V P ++ E + + +P + S PP PPPP +
Sbjct: 489 PSSKMSPSVKAYPPPPPPPEY--EPSPPPPSSEMSPSVRAYPPPPPLSPPPPSPPPPYIY 546
Query: 505 SQPPPANFAQPPPAHSMGVDPVV 573
S PPP + + PPP PVV
Sbjct: 547 SSPPPPSPSPPPPYIYSSPPPVV 569
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,087,338,472
Number of Sequences: 33410
Number of Extensions: 24087338472
Number of Successful Extensions: 761288629
Number of sequences better than 0.0: 0
|