BLASTX 7.6.2
Query= UN51594 /QuerySize=611
(610 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G65260.1 | Symbols: | polyadenylate-binding p... 265 2e-071
TAIR9_protein||AT5G10350.1 | Symbols: | polyadenylate-binding p... 240 6e-064
TAIR9_protein||AT5G10350.2 | Symbols: | polyadenylate-binding p... 208 2e-054
TAIR9_protein||AT5G51120.1 | Symbols: PABN1, ATPABN1 | PABN1 (PO... 204 5e-053
TAIR9_protein||AT3G55460.1 | Symbols: SCL30 | SCL30; RNA binding... 56 2e-008
TAIR9_protein||AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine... 53 1e-007
TAIR9_protein||AT1G71800.1 | Symbols: | cleavage stimulation fa... 49 2e-006
TAIR9_protein||AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotei... 47 8e-006
>TAIR9_protein||AT5G65260.1 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:26080501-26082984 REVERSE
Length = 221
Score = 265 bits (676), Expect = 2e-071
Identities = 124/139 (89%), Positives = 131/139 (94%), Gaps = 2/139 (1%)
Frame = +1
Query: 19 ERGREAMDARSVFVGNVDYACTPEEVQQHFQSCGTVHRVTILTDKFGQPKGFAYVEFVEA 198
+ G+E +DARSVFVGNVDYACTPEEVQQHFQ+CGTVHRVTILTDKFGQPKGFAYVEFVE
Sbjct: 83 QAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEV 142
Query: 199 EAIQEALQLNESELHGRQIKVMPKRTNVPGLKQFRGRRFNPYMG--FRRPFMSPYMYSPY 372
EA+QEALQLNESELHGRQ+KV+ KRTNVPGLKQFRGRRFNPYMG FRRPFMSPYMYSPY
Sbjct: 143 EAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSPY 202
Query: 373 GYGKVPRFRRPMRYMPYQ* 429
GYGK PRFRRPMRYMPYQ*
Sbjct: 203 GYGKAPRFRRPMRYMPYQ* 221
>TAIR9_protein||AT5G10350.1 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:3255674-3257746 REVERSE
Length = 218
Score = 240 bits (611), Expect = 6e-064
Identities = 112/139 (80%), Positives = 123/139 (88%), Gaps = 2/139 (1%)
Frame = +1
Query: 19 ERGREAMDARSVFVGNVDYACTPEEVQQHFQSCGTVHRVTILTDKFGQPKGFAYVEFVEA 198
+ G+E +DARSV+VGNVDYACTPEEVQ HFQ+CGTV+RVTIL DKFGQPKGFAYVEFVE
Sbjct: 80 QEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEV 139
Query: 199 EAIQEALQLNESELHGRQIKVMPKRTNVPGLKQFRGRRFNPYMG--FRRPFMSPYMYSPY 372
EA+QEALQLNESELHGRQ+KV PKRTNVPG+KQ+ RFNP MG FRRPF+ PY YSPY
Sbjct: 140 EAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPY 199
Query: 373 GYGKVPRFRRPMRYMPYQ* 429
GYGK PRFRRPMRYMPYQ*
Sbjct: 200 GYGKAPRFRRPMRYMPYQ* 218
>TAIR9_protein||AT5G10350.2 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:3255808-3257746 REVERSE
Length = 203
Score = 208 bits (529), Expect = 2e-054
Identities = 98/123 (79%), Positives = 109/123 (88%), Gaps = 2/123 (1%)
Frame = +1
Query: 19 ERGREAMDARSVFVGNVDYACTPEEVQQHFQSCGTVHRVTILTDKFGQPKGFAYVEFVEA 198
+ G+E +DARSV+VGNVDYACTPEEVQ HFQ+CGTV+RVTIL DKFGQPKGFAYVEFVE
Sbjct: 80 QEGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEV 139
Query: 199 EAIQEALQLNESELHGRQIKVMPKRTNVPGLKQFRGRRFNPYMG--FRRPFMSPYMYSPY 372
EA+QEALQLNESELHGRQ+KV PKRTNVPG+KQ+ RFNP MG FRRPF+ PY YSPY
Sbjct: 140 EAVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPY 199
Query: 373 GYG 381
GYG
Sbjct: 200 GYG 202
>TAIR9_protein||AT5G51120.1 | Symbols: PABN1, ATPABN1 | PABN1
(POLYADENYLATE-BINDING PROTEIN 1); RNA binding / poly(A) binding /
protein binding | chr5:20779760-20781241 FORWARD
Length = 228
Score = 204 bits (517), Expect = 5e-053
Identities = 101/136 (74%), Positives = 112/136 (82%), Gaps = 9/136 (6%)
Frame = +1
Query: 28 REAMDARSVFVGNVDYACTPEEVQQHFQSCGTVHRVTILTDKFGQPKGFAYVEFVEAEAI 207
+E +D+RS++VGNVDYACTPEEVQQHFQSCGTV+RVTILTDKFGQPKGFAYVEFVE EA+
Sbjct: 97 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAV 156
Query: 208 QEALQLNESELHGRQIKVMPKRTNVPGLKQF--RGRRFNPYMGFRR--PFMSPYMYSPYG 375
Q +L LNESELHGRQIKV KRTNVPG++QF RGR F P GF PF Y PY
Sbjct: 157 QNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGFMPGVPF-----YPPYA 211
Query: 376 YGKVPRFRRPMRYMPY 423
YG+VPRFRRPMRY PY
Sbjct: 212 YGRVPRFRRPMRYRPY 227
>TAIR9_protein||AT3G55460.1 | Symbols: SCL30 | SCL30; RNA binding / nucleic acid
binding / nucleotide binding | chr3:20561024-20563502 FORWARD
Length = 263
Score = 56 bits (133), Expect = 2e-008
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +1
Query: 25 GREAMDARSVFVGNVDYACTPEEVQQHFQSCGTVHRVTILTDKF-GQPKGFAYVEFVEAE 201
GR S+ V N+ C PEE+++ F+ G V V I D + GQP+GFA+VEFV+A
Sbjct: 40 GRRGSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAY 99
Query: 202 AIQEALQ-LNESELHGRQIKVM 264
EA + +N GR+I V+
Sbjct: 100 DAGEAQRSMNRRSFAGREITVV 121
>TAIR9_protein||AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich
RNA-binding protein 5); ATP binding / RNA binding |
chr1:27915346-27916857 FORWARD
Length = 290
Score = 53 bits (125), Expect = 1e-007
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +1
Query: 37 MDARSVFVGNVDYACTPEEVQQHFQSCGTVHRVTILTDK-FGQPKGFAYVEFVEAEAIQE 213
M + +FVG + Y+ +++ F G V I+ D+ G+ +GFA+V F E
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 214 ALQLNESELHGRQIKV 261
A+QL+ +LHGR+I+V
Sbjct: 91 AMQLDGQDLHGRRIRV 106
>TAIR9_protein||AT1G71800.1 | Symbols: | cleavage stimulation factor, putative
| chr1:26999606-27001850 FORWARD
Length = 462
Score = 49 bits (115), Expect = 2e-006
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = +1
Query: 46 RSVFVGNVDYACTPEEVQQHFQSCGTVHRVTILTDK-FGQPKGFAYVEFVEAE-AIQEAL 219
R VFVGN+ Y T E++++ G V ++TD+ G+PKG+ + E+ + E A+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68
Query: 220 QLNESELHGRQIKV 261
L E++GRQ++V
Sbjct: 69 NLQSYEINGRQLRV 82
>TAIR9_protein||AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative | chr2:14898341-14899590
FORWARD
Length = 309
Score = 47 bits (110), Expect = 8e-006
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +1
Query: 46 RSVFVGNVDYACTPEEVQQHFQSCGTVHRVTILTDKFGQPKGFAYVEFVEAEAIQEAL-Q 222
R +FV N+ ++ + ++ + F CGTV+ V I+ K G+ +GFA+V E Q A+ +
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 223 LNESELHGRQIKV 261
+ ++ GR I V
Sbjct: 155 FDTFQVSGRIISV 167
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,452,599,670
Number of Sequences: 33410
Number of Extensions: 24452599670
Number of Successful Extensions: 782539451
Number of sequences better than 0.0: 0
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