BLASTX 7.6.2
Query= UN51894 /QuerySize=760
(759 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis ... 318 8e-085
gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis ... 318 8e-085
gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 ... 286 3e-075
gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT... 282 4e-074
gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein... 278 7e-073
gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabido... 205 6e-051
gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT... 205 6e-051
gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thal... 204 2e-050
gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast,... 184 1e-044
gi|224069480|ref|XP_002326357.1| predicted protein [Populus tric... 174 1e-041
gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucle... 172 5e-041
gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein... 171 2e-040
gi|255639723|gb|ACU20155.1| unknown [Glycine max] 171 2e-040
gi|224140195|ref|XP_002323470.1| predicted protein [Populus tric... 168 1e-039
gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucl... 166 4e-039
gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucl... 161 1e-037
gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays] 160 3e-037
gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT... 159 6e-037
gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucle... 154 2e-035
gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japo... 152 6e-035
>gi|681902|dbj|BAA06518.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 334
Score = 318 bits (813), Expect = 8e-085
Identities = 176/241 (73%), Positives = 189/241 (78%), Gaps = 13/241 (5%)
Frame = +2
Query: 38 RAMSASASSVSLSSFNPKSLLPLCLSRSALKSSSSPAQFPSLFVTHVAVSSDFEVEEDDM 217
R S S SLS L + SALK SSPA++PS FV +VAVSSDFEVEEDDM
Sbjct: 22 RPASVSVLPPSLSFKLHSDHLVSIFASSALK-CSSPAEYPSRFVRNVAVSSDFEVEEDDM 80
Query: 218 FADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVIYDKLTGRSR 397
FAD D P ER+SFS DLKLFVGNLSF+V+SAQLAQLF+SAGNVEMVEVIYDK+TGRSR
Sbjct: 81 FADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSR 140
Query: 398 GFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPRSGGYGSER-S 574
GFGFVTMS+A E EAAAQQFNGYEFEGRPLRVNAGPPPPK EESFSRGPRSGGYGSER
Sbjct: 141 GFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGG 200
Query: 575 GYSSER---------SGYGSQRSGRSGYGSERSSY--GSGSGSGSGSSDRVYVGNLSWGV 721
GY SER GYGSQRSG GS+RSSY GSGSGSGSGS +R+YVGNLSWGV
Sbjct: 201 GYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGV 260
Query: 722 D 724
D
Sbjct: 261 D 261
>gi|681904|dbj|BAA06519.1| RNA-binding protein cp29 [Arabidopsis thaliana]
Length = 326
Score = 318 bits (813), Expect = 8e-085
Identities = 176/241 (73%), Positives = 189/241 (78%), Gaps = 13/241 (5%)
Frame = +2
Query: 38 RAMSASASSVSLSSFNPKSLLPLCLSRSALKSSSSPAQFPSLFVTHVAVSSDFEVEEDDM 217
R S S SLS L + SALK SSPA++PS FV +VAVSSDFEVEEDDM
Sbjct: 14 RPASVSVLPPSLSFKLHSDHLVSIFASSALK-CSSPAEYPSRFVRNVAVSSDFEVEEDDM 72
Query: 218 FADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVIYDKLTGRSR 397
FAD D P ER+SFS DLKLFVGNLSF+V+SAQLAQLF+SAGNVEMVEVIYDK+TGRSR
Sbjct: 73 FADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSR 132
Query: 398 GFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPRSGGYGSER-S 574
GFGFVTMS+A E EAAAQQFNGYEFEGRPLRVNAGPPPPK EESFSRGPRSGGYGSER
Sbjct: 133 GFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGG 192
Query: 575 GYSSER---------SGYGSQRSGRSGYGSERSSY--GSGSGSGSGSSDRVYVGNLSWGV 721
GY SER GYGSQRSG GS+RSSY GSGSGSGSGS +R+YVGNLSWGV
Sbjct: 193 GYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGV 252
Query: 722 D 724
D
Sbjct: 253 D 253
>gi|15231817|ref|NP_190914.1| chloroplast RNA-binding protein 29 [Arabidopsis
thaliana]
Length = 342
Score = 286 bits (730), Expect = 3e-075
Identities = 163/227 (71%), Positives = 175/227 (77%), Gaps = 7/227 (3%)
Frame = +2
Query: 38 RAMSASASSVSLSSFNPKSLLPLCLSRSALKSSSSPAQFPSLFVTHVAVSSDFEVEEDDM 217
R S S SLS L + SALK SSPA++PS FV +VAVSSDFEVEEDDM
Sbjct: 22 RPASVSVLPPSLSFKLHSDHLVSIFASSALK-CSSPAEYPSRFVRNVAVSSDFEVEEDDM 80
Query: 218 FADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVIYDKLTGRSR 397
FAD D P ER+SFS DLKLFVGNLSF+V+SAQLAQLF+SAGNVEMVEVIYDK+TGRSR
Sbjct: 81 FADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSR 140
Query: 398 GFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPRSGGYGSER-S 574
GFGFVTMS+A E EAAAQQFNGYEFEGRPLRVNAGPPPPK EESFSRGPRSGGYGSER
Sbjct: 141 GFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGG 200
Query: 575 GYSSER-SGYGSQRSGRSGYGSER-SSYGS-GSGSGSGSSDRVYVGN 706
GY SER GYGS+R G GYGSER YGS SG G G S R G+
Sbjct: 201 GYGSERGGGYGSERGG--GYGSERGGGYGSQRSGGGYGGSQRSSYGS 245
>gi|297820076|ref|XP_002877921.1| hypothetical protein ARALYDRAFT_348440
[Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 282 bits (721), Expect = 4e-074
Identities = 159/226 (70%), Positives = 172/226 (76%), Gaps = 6/226 (2%)
Frame = +2
Query: 38 RAMSASASSVSLSSFNPKSLLPLCLSRSALKSSSSPAQFPSLFVTHVAVSSDFEVEEDDM 217
R S S SL SF S + L S+ SSPA++P FV +VAVSSDFEVEEDDM
Sbjct: 22 RPASVSVLPPSL-SFKLHSDHIVSLFASSAVKCSSPAEYPLRFVRNVAVSSDFEVEEDDM 80
Query: 218 FADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVIYDKLTGRSR 397
FAD D P ER+SFS DLKLFVGNLSF+V+SAQLAQLF+SAGNVEMVEVIYDK+TGRSR
Sbjct: 81 FADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSR 140
Query: 398 GFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPRSGGYGSER-S 574
GFGFVTMS+A E EAAAQQFNGYEFEGRPLRVNAGPPPPK EESFSRGPRSGGYGSER
Sbjct: 141 GFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGG 200
Query: 575 GYSSER-SGYGSQRSGRSGYGSER-SSYGSGSGSGSGSSDRVYVGN 706
GY SER GYGS+R G GYGSER YGS G G S R G+
Sbjct: 201 GYGSERGGGYGSERGG--GYGSERGGGYGSQRSGGYGGSQRSSYGS 244
>gi|334185950|ref|NP_001190079.1| chloroplast RNA-binding protein 29
[Arabidopsis thaliana]
Length = 363
Score = 278 bits (710), Expect = 7e-073
Identities = 167/257 (64%), Positives = 179/257 (69%), Gaps = 55/257 (21%)
Frame = +2
Query: 74 SSFNPKSLLPLCLSR--------------------------SALKSSSSPAQFPSLFVTH 175
S+FNPKS LPLC+SR SALK SSPA++PS FV +
Sbjct: 9 SAFNPKS-LPLCVSRPASVSVLPPSLSFKLHSDHLVSIFASSALK-CSSPAEYPSRFVRN 66
Query: 176 VAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVE 355
VAVSSDFEVEEDDMFAD D P ER+SFS DLKLFVGNLSF+V+SAQLAQLF+SAGNVE
Sbjct: 67 VAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVE 126
Query: 356 MVEVIYDKLTGRSRGFGFVTMSSAPEAEAAAQQFNGY---------------------EF 472
MVEVIYDK+TGRSRGFGFVTMS+A E EAAAQQFNGY EF
Sbjct: 127 MVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLIRVLCGLEF 186
Query: 473 EGRPLRVNAGPPPPKGEESFSRGPRSGGYGSER-SGYSSER-SGYGSQRSGRSGYGSER- 643
EGRPLRVNAGPPPPK EESFSRGPRSGGYGSER GY SER GYGS+R G GYGSER
Sbjct: 187 EGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGG--GYGSERG 244
Query: 644 SSYGS-GSGSGSGSSDR 691
YGS SG G G S R
Sbjct: 245 GGYGSQRSGGGYGGSQR 261
>gi|21617920|gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 289
Score = 205 bits (521), Expect = 6e-051
Identities = 128/206 (62%), Positives = 143/206 (69%), Gaps = 23/206 (11%)
Frame = +2
Query: 38 RAMSASASSVSLS-SFNPKSLLPLCLSRSALKSSSSPAQFPSLFVTHVAVSSDFEVEEDD 214
R S S S SLS N S +S S +SPA S FV +VA++S+FEVEED
Sbjct: 24 RPASVSLLSPSLSFKLNSDS-----VSFSIAAKWNSPA---SRFVRNVAITSEFEVEEDG 75
Query: 215 MFADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVIYDKLTGRS 394
FA D PP+E+ SFSADLKLFVGNL F+V+SAQLAQLF+SAGNVEMVEVIYDK+TGRS
Sbjct: 76 -FA--DVAPPKEQ-SFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRS 131
Query: 395 RGFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPRSGGYGSERS 574
RGFGFVTMSS E EAAAQQFNGYE +GRPLRVNAGPPPPK E+ FSRGPRS +GS S
Sbjct: 132 RGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRS-SFGSSGS 190
Query: 575 GYSSERSGYGSQRSGRSGYGSERSSY 652
GY G SG GS Y
Sbjct: 191 GYGG---------GGGSGAGSGNRVY 207
>gi|297827229|ref|XP_002881497.1| hypothetical protein ARALYDRAFT_482714
[Arabidopsis lyrata subsp. lyrata]
Length = 289
Score = 205 bits (521), Expect = 6e-051
Identities = 115/172 (66%), Positives = 130/172 (75%), Gaps = 17/172 (9%)
Frame = +2
Query: 137 SSPAQFPSLFVTHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVESA 316
+SPA S FV +VA++S+FEVEED FADD +P ++ SFSADLKLFVGNL F+V+SA
Sbjct: 53 NSPA---SRFVRNVAITSEFEVEEDG-FADDAAP---QQQSFSADLKLFVGNLPFNVDSA 105
Query: 317 QLAQLFDSAGNVEMVEVIYDKLTGRSRGFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVN 496
QLAQLF+SAGNVEMVEVIYDK+TGRSRGFGFVTMSS E EAAA QFNGYE +GRPLRVN
Sbjct: 106 QLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSVSEVEAAANQFNGYELDGRPLRVN 165
Query: 497 AGPPPPKGEESFSRGPRSGGYGSERSGYSSERSGYGSQRSGRSGYGSERSSY 652
AGPPPPK E+ FSRGPRS +GS SGY G SG GS Y
Sbjct: 166 AGPPPPKREDGFSRGPRS-SFGSSGSGYGG---------GGGSGAGSGNRVY 207
>gi|15228102|ref|NP_181259.1| ribonucleoprotein [Arabidopsis thaliana]
Length = 289
Score = 204 bits (517), Expect = 2e-050
Identities = 127/206 (61%), Positives = 142/206 (68%), Gaps = 23/206 (11%)
Frame = +2
Query: 38 RAMSASASSVSLS-SFNPKSLLPLCLSRSALKSSSSPAQFPSLFVTHVAVSSDFEVEEDD 214
R S S S SLS N S +S S +SPA S F +VA++S+FEVEED
Sbjct: 24 RPASVSLLSPSLSFKLNSDS-----VSFSIAAKWNSPA---SRFARNVAITSEFEVEEDG 75
Query: 215 MFADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVIYDKLTGRS 394
FA D PP+E+ SFSADLKLFVGNL F+V+SAQLAQLF+SAGNVEMVEVIYDK+TGRS
Sbjct: 76 -FA--DVAPPKEQ-SFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRS 131
Query: 395 RGFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPRSGGYGSERS 574
RGFGFVTMSS E EAAAQQFNGYE +GRPLRVNAGPPPPK E+ FSRGPRS +GS S
Sbjct: 132 RGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRS-SFGSSGS 190
Query: 575 GYSSERSGYGSQRSGRSGYGSERSSY 652
GY G SG GS Y
Sbjct: 191 GYGG---------GGGSGAGSGNRVY 207
>gi|255556984|ref|XP_002519525.1| ribonucleoprotein, chloroplast, putative
[Ricinus communis]
Length = 280
Score = 184 bits (466), Expect = 1e-044
Identities = 112/208 (53%), Positives = 130/208 (62%), Gaps = 29/208 (13%)
Frame = +2
Query: 47 SASASSVSLSSFNPKSL---------------------LPLCLSRSALKSSSSPAQFPSL 163
+ASASS+ L S NPK+L +P L S + P S
Sbjct: 3 TASASSLVLPSLNPKTLSLCNPNKPISLSFKLHAKPISIPSSLFSSFVPLQQQPYSSSSR 62
Query: 164 FVTHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSA 343
FV VA+SS+F +E+D+ +D D SSFS DLKLFVGNL F+V+SAQLA LF+SA
Sbjct: 63 FVPSVAISSEFG-QEEDVSSDGD------ESSFSQDLKLFVGNLPFNVDSAQLAGLFESA 115
Query: 344 GNVEMVEVIYDKLTGRSRGFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGE 523
GNVEMVEVIYDK+TGRSRGFGFVTMSS E EAAAQQFNGYE EGR LRVN+GPPP + E
Sbjct: 116 GNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSGPPPQR-E 174
Query: 524 ESFSRGPRSGGYGSERSGYSSERSGYGS 607
SFSR PR GG G R G+
Sbjct: 175 SSFSRSPRFGGGGGGGESLEGNRLYVGN 202
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 174 bits (441), Expect = 1e-041
Identities = 102/191 (53%), Positives = 127/191 (66%), Gaps = 19/191 (9%)
Frame = +2
Query: 14 TLSHPERERAMSASASSVS-LSSFNPKSLLPLCLSRSALKSSSSPAQFPSLFVTHVAVSS 190
+L+HP ++ + +S+S LS + S+ P L S + P S F+ VA+SS
Sbjct: 13 SLNHPNTIKSFYSKPTSLSFLSLSSTSSIKPASLFLSFQQKQQQP--LSSRFLKSVAISS 70
Query: 191 DFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVI 370
+F +E+D+F D D P SFS DL+LFVGNL F+V SAQLA LF SAGNVEMVEV
Sbjct: 71 EFG-QEEDVFGDGDEP------SFSPDLQLFVGNLPFNVNSAQLADLFKSAGNVEMVEVK 123
Query: 371 YDKLTGRSRGFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPP---------PKGE 523
YDK+TGRSRGFGFVTMS+ E EAA+QQFNGYE +GRPLRVN+GPPP P+ E
Sbjct: 124 YDKVTGRSRGFGFVTMSTIEEVEAASQQFNGYELDGRPLRVNSGPPPQRETSFSRLPQRE 183
Query: 524 ESFSRGPRSGG 556
SFSRGP + G
Sbjct: 184 NSFSRGPGARG 194
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP31; Flags: Precursor
Length = 292
Score = 172 bits (435), Expect = 5e-041
Identities = 109/200 (54%), Positives = 127/200 (63%), Gaps = 15/200 (7%)
Frame = +2
Query: 68 SLSSFN-PKSLLPLCLSRSALKSSSSPAQFPSLFVTHVAVSSDFEVEEDDMFADDDSPPP 244
+LS F+ P S L L LS S++ S+S F S F T VA+ SDF+ EDD+
Sbjct: 27 TLSFFSLPSSSLNLSLSSSSIGHSASIKPFESSFSTRVAL-SDFDQLEDDV-------EV 78
Query: 245 QERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVIYDKLTGRSRGFGFVTMSS 424
E+ FS DLKLFVGNL F V+SA LA LF+ AGNVE+VEVIYDKL+GRSRGFGFVTMS+
Sbjct: 79 AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMST 138
Query: 425 APEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPRSG--GYGSERSGYSSERSG 598
E EAA QQFNGYE +GR +RVNAGP P K E S G R G YG R G SS
Sbjct: 139 KEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSS---- 194
Query: 599 YGSQRSGRSGYGSERSSYGS 658
+G R GRS S R G+
Sbjct: 195 FGGARGGRSVDSSNRVYVGN 214
>gi|225440003|ref|XP_002281642.1| PREDICTED: hypothetical protein [Vitis
vinifera]
Length = 288
Score = 171 bits (431), Expect = 2e-040
Identities = 103/200 (51%), Positives = 130/200 (65%), Gaps = 12/200 (6%)
Frame = +2
Query: 50 ASASSVSLSSFN-PKSLLPLCLSRSALKSSSSPAQFPSL---FVTHVAVSSDFEVEEDDM 217
A + S+S F+ P S L L +++ S S F +L FV +VAVSSD+E +++D+
Sbjct: 19 AISKPTSVSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLSSRFVRNVAVSSDYE-QDEDV 77
Query: 218 FADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVIYDKLTGRSR 397
+D+ P SFS DLKLFVGNL F+V+SA LA LF+ AGNVEMVEVIYDK+TGRSR
Sbjct: 78 LSDEGEP------SFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSR 131
Query: 398 GFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPRSGGYGSERSG 577
GFGFVTMS+ E EAAAQQFNGYE EGR LRVN+GPPP + E S RG S + E +
Sbjct: 132 GFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENSNFRGENS-NFRGENTN 190
Query: 578 YSSERSGYGSQRSGRSGYGS 637
+ R G + R G+
Sbjct: 191 FRGPRGGANLNSTNRIYVGN 210
>gi|255639723|gb|ACU20155.1| unknown [Glycine max]
Length = 279
Score = 171 bits (431), Expect = 2e-040
Identities = 107/197 (54%), Positives = 125/197 (63%), Gaps = 16/197 (8%)
Frame = +2
Query: 14 TLSHPERERAMSASASSVSLSSFNPKSLLPLCLSRSALK---SSSSPAQFPSLFVTHVAV 184
TL+ R+ S S SL S P S P+ +S LK SSSSP S FV HV+V
Sbjct: 12 TLTLRTRQPLCSPQCFSSSL-SLTPNS-KPISISAVFLKTTLSSSSPLSLSSRFVPHVSV 69
Query: 185 SSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVE 364
+E+D F D D P SFS DLKLFVGNL F V+SA+LA+LF+SAGNVE+VE
Sbjct: 70 LE----QEEDTFGDGDGP------SFSRDLKLFVGNLPFSVDSARLAELFESAGNVEVVE 119
Query: 365 VIYDKLTGRSRGFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGP 544
VIYDK TGRSRGFGFVTMSS EAEAAA+QFNGYE +GR LRVN+GPPP + ES R
Sbjct: 120 VIYDKTTGRSRGFGFVTMSSVEEAEAAAKQFNGYELDGRSLRVNSGPPPAR-NESAPRFR 178
Query: 545 RSGGYGSERSGYSSERS 595
+GS G S +
Sbjct: 179 GGSSFGSRGGGPSDSEN 195
>gi|224140195|ref|XP_002323470.1| predicted protein [Populus trichocarpa]
Length = 273
Score = 168 bits (424), Expect = 1e-039
Identities = 97/181 (53%), Positives = 124/181 (68%), Gaps = 12/181 (6%)
Frame = +2
Query: 14 TLSHPERERAMSASASSV-SLSSFNPKSLLPLCLSRSALKSSSSPAQFPSLFVTHVAVSS 190
+L+HP ++ + +S+ LS + SL P+ L L S F+ +VA+SS
Sbjct: 13 SLNHPNTIKSFYSKPNSLFFLSPSSTSSLKPVSL---LLSFQHQQQPLSSRFLKNVAISS 69
Query: 191 DFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVI 370
+F +E+D +D D SFS DLKLFVGNL F+V+SA+LA LF++AGNVEMVEVI
Sbjct: 70 EFG-QEEDFLSDGD------EQSFSQDLKLFVGNLPFNVDSARLAGLFETAGNVEMVEVI 122
Query: 371 YDKLTGRSRGFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPRS 550
YDK+TGRSRGFGFVTM++ E EAA++QFNGYE +GR LRVN GPPP K E SFSRGPR
Sbjct: 123 YDKVTGRSRGFGFVTMTTIEEVEAASKQFNGYELDGRTLRVNFGPPPQK-ESSFSRGPRG 181
Query: 551 G 553
G
Sbjct: 182 G 182
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B,
chloroplastic; AltName: Full=CP29B; Flags: Precursor
Length = 291
Score = 166 bits (419), Expect = 4e-039
Identities = 108/200 (54%), Positives = 123/200 (61%), Gaps = 16/200 (8%)
Frame = +2
Query: 68 SLSSFN-PKSLLPLCLSRSALKSSSSPAQFPSLFVTHVAVSSDFEVEEDDMFADDDSPPP 244
+LS F+ P S L L LS S+ S F S F T VA+S ++E+D A
Sbjct: 27 TLSFFSLPSSSLNLSLSSSS-TGLCSIKPFESSFSTRVALSGFDQLEDDVEVA------- 78
Query: 245 QERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVIYDKLTGRSRGFGFVTMSS 424
E+ FS DLKLFVGNL F V+SA LA LF+ AGNVEMVEVIYDKLTGRSRGFGFVTMS+
Sbjct: 79 -EQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMST 137
Query: 425 APEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPRSG--GYGSERSGYSSERSG 598
E EAA QQFNGYE +GR +RVNAGP P K E S G R G YG R G SS
Sbjct: 138 KEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSS---- 193
Query: 599 YGSQRSGRSGYGSERSSYGS 658
+G R GRS S R G+
Sbjct: 194 FGGARGGRSVDSSNRVYVGN 213
>gi|12230584|sp|Q08935.1|ROC1_NICSY RecName: Full=29 kDa ribonucleoprotein A,
chloroplastic; AltName: Full=CP29A; Flags: Precursor
Length = 273
Score = 161 bits (406), Expect = 1e-037
Identities = 89/144 (61%), Positives = 101/144 (70%), Gaps = 4/144 (2%)
Frame = +2
Query: 125 LKSSSSPAQFPSLFVTHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFD 304
L SSS + F S FV V + SDF+ ED +D +E +FS DLK+FVGNL F
Sbjct: 42 LSLSSSSSCFSSRFVRKVTL-SDFDQIED---VEDGDDGVEEERNFSPDLKIFVGNLPFS 97
Query: 305 VESAQLAQLFDSAGNVEMVEVIYDKLTGRSRGFGFVTMSSAPEAEAAAQQFNGYEFEGRP 484
+SA LA+LF+ AGNVEMVEVIYDKLTGRSRGFGFVTMSS E EAA QQFNGYE +GR
Sbjct: 98 ADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRA 157
Query: 485 LRVNAGPPPPKGEESFSRGPRSGG 556
LRVN+GPPP K E S RG GG
Sbjct: 158 LRVNSGPPPEKRENSSFRGGSRGG 181
>gi|226502782|ref|NP_001151728.1| ribonucleoprotein A [Zea mays]
Length = 268
Score = 160 bits (403), Expect = 3e-037
Identities = 92/175 (52%), Positives = 112/175 (64%), Gaps = 10/175 (5%)
Frame = +2
Query: 47 SASASSVSLSSFNPKSLLPLCLSRSALKSSSSPAQFPSLFV---THVAVSSDFEVEEDDM 217
S+S S L+ +PK P + + P V VAVSS+++ E +
Sbjct: 7 SSSLSPRFLALSSPKPAAPAATAFLPFRLPPRAVSAPGRRVFEPVAVAVSSEYKTEGAEQ 66
Query: 218 FADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVIYDKLTGRSR 397
+D S FS DLKLFVGNL F V+SAQLA LF+ AG+VEMVEV+YD++TGRSR
Sbjct: 67 EGEDGS------EEFSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGRSR 120
Query: 398 GFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPRSGGYG 562
GFGFVTMSSA EAEAA +QFNGY F+GR LRVN GPPPP+ +ES R PR GG G
Sbjct: 121 GFGFVTMSSAEEAEAAVEQFNGYAFQGRQLRVNCGPPPPR-DESTPRAPRGGGGG 174
>gi|242046410|ref|XP_002461076.1| hypothetical protein SORBIDRAFT_02g040260
[Sorghum bicolor]
Length = 268
Score = 159 bits (400), Expect = 6e-037
Identities = 97/177 (54%), Positives = 119/177 (67%), Gaps = 17/177 (9%)
Frame = +2
Query: 47 SASASSVSLSSFNP-----KSLLPLCLSRSALKSSSSPAQFPSLFVTHVAVSSDFEVEED 211
S S ++LSS P + LP R L++ S+P + V VAVSS++E E
Sbjct: 9 SLSPRFLALSSAKPAAPAASAFLPF---RLPLRAVSAPGRRVFEPVA-VAVSSEYETEG- 63
Query: 212 DMFADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVIYDKLTGR 391
A+ + +E FS DLKLFVGNL F V+SAQLA LF+ AG+VEMVEV+YD++TGR
Sbjct: 64 ---AEQEEEGAEE---FSEDLKLFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRMTGR 117
Query: 392 SRGFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPRSGGYG 562
SRGFGFVTMSSA EA AA +QFNGY F+GRPLRVN GPPPP+ +ES R PR GG G
Sbjct: 118 SRGFGFVTMSSAEEAGAAVEQFNGYTFQGRPLRVNCGPPPPR-DESAPRAPRGGGGG 173
>gi|1350820|sp|P49313.1|ROC1_NICPL RecName: Full=30 kDa ribonucleoprotein,
chloroplastic; AltName: Full=CP-RBP30; Flags: Precursor
Length = 279
Score = 154 bits (388), Expect = 2e-035
Identities = 90/157 (57%), Positives = 103/157 (65%), Gaps = 5/157 (3%)
Frame = +2
Query: 125 LKSSSSPAQFPSLFVTHVAVSSDFEVEEDDMFADDDSPPPQERSSFSADLKLFVGNLSFD 304
L SS + F S FV V + DF+ ED +D +E +FS DLK+FVGNL F
Sbjct: 42 LSLSSPSSCFSSRFVRKVTL-PDFDQIED---VEDGDEGVEEERNFSPDLKIFVGNLLFS 97
Query: 305 VESAQLAQLFDSAGNVEMVEVIYDKLTGRSRGFGFVTMSSAPEAEAAAQQFNGYEFEGRP 484
+SA LA+LF+ AGNVEMVEVIYDKLTGRSRGFGFVTMSS E EAA QQFNGYE +GR
Sbjct: 98 ADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRA 157
Query: 485 LRVNAGPPPPKGEESFSRGPRSGGYGSERSGYSSERS 595
LRVN+GPPP K E S R S G R G S + S
Sbjct: 158 LRVNSGPPPEKRENSSFR-ENSSFRGGSRGGGSFDSS 193
>gi|115453241|ref|NP_001050221.1| Os03g0376600 [Oryza sativa Japonica Group]
Length = 265
Score = 152 bits (383), Expect = 6e-035
Identities = 93/173 (53%), Positives = 114/173 (65%), Gaps = 9/173 (5%)
Frame = +2
Query: 41 AMSASASSVSLSSFNPKSLLPLCLSR---SALKSSSSPAQFPSLFV-THVAVSSDFEVEE 208
A+S + +S NP S LS+ AL + P + S FV VAVS + E EE
Sbjct: 9 ALSPHLLPLPSTSSNPASSSLSFLSKPLLPALAVAGWPRRRTSPFVPVAVAVSEEVETEE 68
Query: 209 DDMFADDDSPPPQERSSFSADLKLFVGNLSFDVESAQLAQLFDSAGNVEMVEVIYDKLTG 388
D+ ++ S + FS DL++FVGNL F V+SAQLA LF+ AG+VEMVEVIYDKLTG
Sbjct: 69 DEEEEEEGSGGEE----FSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTG 124
Query: 389 RSRGFGFVTMSSAPEAEAAAQQFNGYEFEGRPLRVNAGPPPPKGEESFSRGPR 547
RSRGFGFVTMSS E EAA +QFNGY +GR LRVN+GPPPP+ E+S R PR
Sbjct: 125 RSRGFGFVTMSSVEEVEAAVEQFNGYILDGRSLRVNSGPPPPR-EQSSQRAPR 176
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,595,527,236,032
Number of Sequences: 15229318
Number of Extensions: 5595527236032
Number of Successful Extensions: 1300219324
Number of sequences better than 0.0: 0
|
