BLASTX 7.6.2
Query= UN52163 /QuerySize=465
(464 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G32790.1 | Symbols: CID11 | RNA-binding protei... 106 1e-023
TAIR9_protein||AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CI... 89 1e-018
TAIR9_protein||AT1G53650.1 | Symbols: CID8 | CID8 (CTC-INTERACTI... 84 5e-017
TAIR9_protein||AT1G53650.2 | Symbols: CID8 | CID8 (CTC-INTERACTI... 84 5e-017
TAIR9_protein||AT3G49390.1 | Symbols: CID10 | CID10; RNA binding... 84 5e-017
TAIR9_protein||AT3G49390.2 | Symbols: CID10 | CID10; RNA binding... 84 5e-017
TAIR9_protein||AT3G14450.1 | Symbols: CID9 | CID9 (CTC-Interacti... 80 4e-016
TAIR9_protein||AT1G32790.2 | Symbols: CID11 | RNA-binding protei... 78 2e-015
TAIR9_protein||AT5G24440.1 | Symbols: CID13 | CID13 (CTC-Interac... 76 1e-014
TAIR9_protein||AT4G10610.2 | Symbols: RBP37, ATRBP37 | CID12; RN... 62 2e-010
>TAIR9_protein||AT1G32790.1 | Symbols: CID11 | RNA-binding protein, putative |
chr1:11875174-11877188 REVERSE
Length = 359
Score = 106 bits (262), Expect = 1e-023
Identities = 51/52 (98%)
Frame = +2
Query: 2 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRHPMH* 157
HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRHPMH*
Sbjct: 308 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRHPMH* 359
Score = 49 bits (114), Expect = 2e-006
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +2
Query: 11 RIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSP 139
R AF+EF E A+ ALN SG +LG P++V PSKT + P +P
Sbjct: 213 RFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNP 255
>TAIR9_protein||AT4G10610.1 | Symbols: RBP37, ATRBP37, CID12 | CID12; RNA
binding | chr4:6557336-6559143 FORWARD
Length = 337
Score = 89 bits (219), Expect = 1e-018
Identities = 45/53 (84%), Positives = 47/53 (88%), Gaps = 1/53 (1%)
Frame = +2
Query: 2 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRS-PRHPMH* 157
H TRI FVEFVMAESAIAALNCSGV+LGSLPIRVSPSKTPVR R+ PRH MH*
Sbjct: 285 HPTRIGFVEFVMAESAIAALNCSGVLLGSLPIRVSPSKTPVRSRAIPRHQMH* 337
>TAIR9_protein||AT1G53650.1 | Symbols: CID8 | CID8 (CTC-INTERACTING DOMAIN 8);
RNA binding / protein binding | chr1:20029262-20031243 REVERSE
Length = 315
Score = 84 bits (205), Expect = 5e-017
Identities = 41/49 (83%), Positives = 43/49 (87%)
Frame = +2
Query: 2 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRHP 148
HSTRIAFVEF MAESA+AALNCSG+VLGS PIRVSPSKTPVR R R P
Sbjct: 263 HSTRIAFVEFAMAESAVAALNCSGIVLGSQPIRVSPSKTPVRSRITRSP 311
>TAIR9_protein||AT1G53650.2 | Symbols: CID8 | CID8 (CTC-INTERACTING DOMAIN 8);
RNA binding / protein binding | chr1:20029262-20031243 REVERSE
Length = 309
Score = 84 bits (205), Expect = 5e-017
Identities = 41/49 (83%), Positives = 43/49 (87%)
Frame = +2
Query: 2 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRHP 148
HSTRIAFVEF MAESA+AALNCSG+VLGS PIRVSPSKTPVR R R P
Sbjct: 257 HSTRIAFVEFAMAESAVAALNCSGIVLGSQPIRVSPSKTPVRSRITRSP 305
>TAIR9_protein||AT3G49390.1 | Symbols: CID10 | CID10; RNA binding / protein
binding | chr3:18314901-18317658 REVERSE
Length = 354
Score = 84 bits (205), Expect = 5e-017
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +2
Query: 2 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPR 142
H TRIAFVEF MAESAIAAL+CSG+VLG+LPIRVSPSKTPVRP PR
Sbjct: 303 HQTRIAFVEFAMAESAIAALHCSGIVLGALPIRVSPSKTPVRPHFPR 349
Score = 48 bits (112), Expect = 3e-006
Identities = 23/43 (53%), Positives = 29/43 (67%)
Frame = +2
Query: 11 RIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSP 139
R AF+EF E A AAL+ SG VLG P++V PSKT + P +P
Sbjct: 209 RFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIAPVNP 251
>TAIR9_protein||AT3G49390.2 | Symbols: CID10 | CID10; RNA binding / protein
binding | chr3:18314901-18317658 REVERSE
Length = 354
Score = 84 bits (205), Expect = 5e-017
Identities = 40/47 (85%), Positives = 43/47 (91%)
Frame = +2
Query: 2 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPR 142
H TRIAFVEF MAESAIAAL+CSG+VLG+LPIRVSPSKTPVRP PR
Sbjct: 303 HQTRIAFVEFAMAESAIAALHCSGIVLGALPIRVSPSKTPVRPHFPR 349
Score = 48 bits (112), Expect = 3e-006
Identities = 23/43 (53%), Positives = 29/43 (67%)
Frame = +2
Query: 11 RIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSP 139
R AF+EF E A AAL+ SG VLG P++V PSKT + P +P
Sbjct: 209 RFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIAPVNP 251
>TAIR9_protein||AT3G14450.1 | Symbols: CID9 | CID9 (CTC-Interacting Domain 9);
RNA binding / protein binding | chr3:4849788-4851601 FORWARD
Length = 328
Score = 80 bits (197), Expect = 4e-016
Identities = 38/49 (77%), Positives = 44/49 (89%)
Frame = +2
Query: 2 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRHP 148
HSTRIAFVEF +A+SA++ALNCSG+V+GS PIRVSPSKTPVRPR R P
Sbjct: 276 HSTRIAFVEFALADSALSALNCSGMVVGSQPIRVSPSKTPVRPRITRPP 324
>TAIR9_protein||AT1G32790.2 | Symbols: CID11 | RNA-binding protein, putative |
chr1:11875028-11877188 REVERSE
Length = 407
Score = 78 bits (191), Expect = 2e-015
Identities = 48/88 (54%), Positives = 55/88 (62%), Gaps = 7/88 (7%)
Frame = +2
Query: 2 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSPRHPMH*S*LYTFPH 181
HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR S + L F +
Sbjct: 308 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRSSFKDACSSEITEASNALILALQVFTY 367
Query: 182 M-------SLSLLRNSIHRHVKMFVCIS 244
+ +L+ ++HRHVKMFVCIS
Sbjct: 368 LMSPQYIYRCVVLKTALHRHVKMFVCIS 395
Score = 49 bits (114), Expect = 2e-006
Identities = 22/43 (51%), Positives = 29/43 (67%)
Frame = +2
Query: 11 RIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRSP 139
R AF+EF E A+ ALN SG +LG P++V PSKT + P +P
Sbjct: 213 RFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNP 255
>TAIR9_protein||AT5G24440.1 | Symbols: CID13 | CID13 (CTC-Interacting Domain
13); RNA binding / nucleic acid binding / nucleotide binding |
chr5:8345402-8347776 REVERSE
Length = 321
Score = 76 bits (185), Expect = 1e-014
Identities = 37/42 (88%), Positives = 39/42 (92%)
Frame = +2
Query: 2 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVR 127
H TRIAFVEF +AESAI+ALNCSGVVLG LPIRVSPSKTPVR
Sbjct: 272 HQTRIAFVEFKLAESAISALNCSGVVLGELPIRVSPSKTPVR 313
>TAIR9_protein||AT4G10610.2 | Symbols: RBP37, ATRBP37 | CID12; RNA binding |
chr4:6557336-6559019 FORWARD
Length = 327
Score = 62 bits (148), Expect = 2e-010
Identities = 30/33 (90%), Positives = 31/33 (93%)
Frame = +2
Query: 2 HSTRIAFVEFVMAESAIAALNCSGVVLGSLPIR 100
H TRI FVEFVMAESAIAALNCSGV+LGSLPIR
Sbjct: 285 HPTRIGFVEFVMAESAIAALNCSGVLLGSLPIR 317
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,663,832,223
Number of Sequences: 33410
Number of Extensions: 24663832223
Number of Successful Extensions: 782751794
Number of sequences better than 0.0: 0
|
