BLASTX 7.6.2
Query= UN52759 /QuerySize=733
(732 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=B... 124 6e-028
sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=H... 124 6e-028
sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=M... 124 6e-028
sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=P... 124 6e-028
sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau ... 122 2e-027
sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau ... 122 2e-027
sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16... 114 1e-024
sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizo... 90 1e-017
sp|P25299|RNA15_YEAST mRNA 3'-end-processing protein RNA15 OS=Sa... 83 2e-015
sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein... 63 2e-009
sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Ni... 63 2e-009
sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=... 62 3e-009
sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Or... 62 5e-009
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=... 61 6e-009
sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=... 61 8e-009
sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Or... 61 8e-009
sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Tr... 61 8e-009
sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Ar... 60 1e-008
sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorgh... 60 2e-008
sp|Q44560|RBPA_ANASP Putative RNA-binding protein rbpA OS=Anabae... 60 2e-008
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus
GN=CSTF2 PE=2 SV=1
Length = 572
Score = 124 bits (311), Expect = 6e-028
Identities = 61/90 (67%), Positives = 72/90 (80%)
Frame = +3
Query: 36 RCVFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 215
R VFVGNIPY+ATEEQLK+I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 216 NLQSYDINGRQL*VDFAENDKGTDKPRDQG 305
NL + +GR L VD A ++K ++ + G
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLG 105
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens
GN=CSTF2 PE=1 SV=1
Length = 577
Score = 124 bits (311), Expect = 6e-028
Identities = 61/90 (67%), Positives = 72/90 (80%)
Frame = +3
Query: 36 RCVFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 215
R VFVGNIPY+ATEEQLK+I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 216 NLQSYDINGRQL*VDFAENDKGTDKPRDQG 305
NL + +GR L VD A ++K ++ + G
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLG 105
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus
GN=Cstf2 PE=1 SV=2
Length = 580
Score = 124 bits (311), Expect = 6e-028
Identities = 61/90 (67%), Positives = 72/90 (80%)
Frame = +3
Query: 36 RCVFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 215
R VFVGNIPY+ATEEQLK+I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 216 NLQSYDINGRQL*VDFAENDKGTDKPRDQG 305
NL + +GR L VD A ++K ++ + G
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLG 105
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii
GN=CSTF2 PE=2 SV=1
Length = 577
Score = 124 bits (311), Expect = 6e-028
Identities = 61/90 (67%), Positives = 72/90 (80%)
Frame = +3
Query: 36 RCVFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 215
R VFVGNIPY+ATEEQLK+I EVGPVVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 216 NLQSYDINGRQL*VDFAENDKGTDKPRDQG 305
NL + +GR L VD A ++K ++ + G
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLG 105
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo
sapiens GN=CSTF2T PE=1 SV=1
Length = 616
Score = 122 bits (306), Expect = 2e-027
Identities = 61/92 (66%), Positives = 72/92 (78%)
Frame = +3
Query: 36 RCVFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 215
R VFVGNIPY+ATEEQLK+I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 216 NLQSYDINGRQL*VDFAENDKGTDKPRDQGQA 311
NL + +GR L VD A ++K ++ + G A
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPA 107
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus
musculus GN=Cstf2t PE=1 SV=2
Length = 632
Score = 122 bits (306), Expect = 2e-027
Identities = 61/92 (66%), Positives = 72/92 (78%)
Frame = +3
Query: 36 RCVFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 215
R VFVGNIPY+ATEEQLK+I EVG VVSFRLV DRETGKPKGYGFCEY+D+ETALSA R
Sbjct: 16 RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query: 216 NLQSYDINGRQL*VDFAENDKGTDKPRDQGQA 311
NL + +GR L VD A ++K ++ + G A
Sbjct: 76 NLNGREFSGRALRVDNAASEKNKEELKSLGPA 107
>sp|Q9P6P7|YKCG_SCHPO Uncharacterized RNA-binding protein C644.16
OS=Schizosaccharomyces pombe GN=SPAC644.16 PE=2 SV=1
Length = 422
Score = 114 bits (283), Expect = 1e-024
Identities = 76/213 (35%), Positives = 110/213 (51%), Gaps = 1/213 (0%)
Frame = +3
Query: 42 VFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 221
V+VGNIPY+ EEQ+ +I + GPV SF+LV D E+G+PKGYGFCEY D TA SA RNL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 222 QSYDINGRQL*VDFAENDKGTDKPRDQGQAGTSLPPAVTATDSQKQTGGAVDLNMHQPVG 401
+YD R+L VDF D+ + G + P A S QP
Sbjct: 67 NNYDAGTRRLRVDFPTADQIRRLDKLLGPSRYGYYPQSYANQSYTYGNNFGSYPPTQPST 126
Query: 402 LNLAMQAASVMAGALGGPQVGSQSTLQVTASDPLTLHLAKMSRSQLSDIISSVKLMATQN 581
L Q+ + G + GS V A+D + LA+++ +++ ++S++K + +
Sbjct: 127 QPLP-QSYGYPSYPPAGYRGGSARPSGVLANDEVYRVLAQLAPNEIDYMLSAIKALCLEA 185
Query: 582 KEDARQLLVSRPHLLKSVFLAQIMLGIVSPQVL 680
E A QL + P L +VF A +M S V+
Sbjct: 186 PEQAAQLFETNPQLSYAVFQAMLMKRYTSESVV 218
>sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces
pombe GN=ctf1 PE=1 SV=1
Length = 363
Score = 90 bits (222), Expect = 1e-017
Identities = 42/78 (53%), Positives = 55/78 (70%)
Frame = +3
Query: 42 VFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 221
VFVGNIPYD +E+Q+ EI +VGPV +F+LV D ETG KGYGFCE+ D ET A R L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 222 QSYDINGRQL*VDFAEND 275
+ ++ R++ V+F ND
Sbjct: 69 NNSELGPRKIRVEFPSND 86
>sp|P25299|RNA15_YEAST mRNA 3'-end-processing protein RNA15 OS=Saccharomyces
cerevisiae GN=RNA15 PE=1 SV=1
Length = 296
Score = 83 bits (203), Expect = 2e-015
Identities = 37/91 (40%), Positives = 59/91 (64%)
Frame = +3
Query: 36 RCVFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 215
R V++G+IPYD TEEQ+ ++C VGPV++ +++ D +TG+ KGY F E++D E++ SA R
Sbjct: 18 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 77
Query: 216 NLQSYDINGRQL*VDFAENDKGTDKPRDQGQ 308
NL Y + R L ++ N + + Q Q
Sbjct: 78 NLNGYQLGSRFLKCGYSSNSDISGVSQQQQQ 108
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza
sativa subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 63 bits (152), Expect = 2e-009
Identities = 33/87 (37%), Positives = 47/87 (54%)
Frame = +3
Query: 42 VFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 221
VFVG IPYD TE L + + G VV LV D+ TGK KG+ F Y+D+ + + A NL
Sbjct: 38 VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 222 QSYDINGRQL*VDFAENDKGTDKPRDQ 302
+ GR + VD K ++ ++
Sbjct: 98 NGAKVLGRIVRVDHVSKYKKKEEEDEE 124
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana
plumbaginifolia GN=U2AF65B PE=2 SV=1
Length = 573
Score = 63 bits (151), Expect = 2e-009
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Frame = +3
Query: 42 VFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 221
+FVG +PY TE Q++E+ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 361 IFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDVSVTDIACAAL 420
Query: 222 QSYDINGRQL*VDFAENDKGTDKPRDQGQA 311
+ + L V A ++GT +P+ + ++
Sbjct: 421 NGIKMGDKTLTVRRA--NQGTTQPKPEQES 448
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 276
Score = 62 bits (149), Expect = 3e-009
Identities = 30/76 (39%), Positives = 47/76 (61%)
Frame = +3
Query: 42 VFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 221
++VGNIP+D + +L+++ E G VVS R+V DRE+G+ +G+GF E A NL
Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252
Query: 222 QSYDINGRQL*VDFAE 269
++GR + V+ AE
Sbjct: 253 DGQTLDGRTIRVNAAE 268
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa
subsp. japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 62 bits (148), Expect = 5e-009
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Frame = +3
Query: 42 VFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 221
+FVG +PY TE Q++E+ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 360 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 419
Query: 222 QSYDINGRQL*VDFAENDKGTDKPRDQGQA 311
+ + L V A ++G +PR + ++
Sbjct: 420 NGIKMGDKTLTVRRA--NQGASQPRPEQES 447
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
sylvestris PE=1 SV=1
Length = 315
Score = 61 bits (147), Expect = 6e-009
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +3
Query: 42 VFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 221
++VGNIP+ + +L+++ E G VVS R+V DRETG+ +G+GF E A NL
Sbjct: 232 IYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANL 291
Query: 222 QSYDINGRQL*VDFAEN 272
++GR + V+ AE+
Sbjct: 292 DGQSLDGRTIRVNVAED 308
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia
oleracea PE=1 SV=1
Length = 233
Score = 61 bits (146), Expect = 8e-009
Identities = 30/76 (39%), Positives = 46/76 (60%)
Frame = +3
Query: 42 VFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 221
V+VGN+P+D +L+++ E G VVS R+V+DRETG+ +G+GF E A L
Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 210
Query: 222 QSYDINGRQL*VDFAE 269
++GR + V+ AE
Sbjct: 211 DGQTLDGRAVRVNVAE 226
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa
subsp. japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 61 bits (146), Expect = 8e-009
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Frame = +3
Query: 42 VFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 221
+FVG +PY TE Q++E+ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 336 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 395
Query: 222 QSYDINGRQL*VDFAENDKGTDKPRDQGQA 311
+ + L V A ++G +PR + ++
Sbjct: 396 NGIKMGDKTLTVRRA--NQGAAQPRPEQES 423
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 61 bits (146), Expect = 8e-009
Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
Frame = +3
Query: 42 VFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 221
+FVG +PY TE Q++E+ GP+ F LV DRETG KGY FC Y+D A L
Sbjct: 329 IFVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAAL 388
Query: 222 QSYDINGRQL*VDFAENDKGTDKPRDQ 302
+ + L V A ++G+ +PR +
Sbjct: 389 NGIKMGDKTLTVRRA--NQGSAQPRPE 413
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis
thaliana GN=U2AF65B PE=2 SV=2
Length = 589
Score = 60 bits (145), Expect = 1e-008
Identities = 26/49 (53%), Positives = 33/49 (67%)
Frame = +3
Query: 42 VFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKD 188
+FVG +PY TE Q++E+ GP+ F LV DRETG KGY FC Y+D
Sbjct: 377 IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQD 425
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor
GN=GRP2 PE=2 SV=1
Length = 168
Score = 60 bits (143), Expect = 2e-008
Identities = 27/89 (30%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +3
Query: 15 SSSSSQRRCVFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEE 194
+++ + RC FVG + + E L++ G V+ +++TDRETG+ +G+GF + E+
Sbjct: 2 AAADVEYRC-FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQ 60
Query: 195 TALSARRNLQSYDINGRQL*VDFAENDKG 281
+ L A N+ +++GR + V+ A++ G
Sbjct: 61 SMLDAIENMNGKELDGRNITVNQAQSRGG 89
>sp|Q44560|RBPA_ANASP Putative RNA-binding protein rbpA OS=Anabaena sp. (strain
PCC 7120) GN=rbpA PE=3 SV=3
Length = 102
Score = 60 bits (143), Expect = 2e-008
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Frame = +3
Query: 42 VFVGNIPYDATEEQLKEICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 221
++VGN+ Y+ T++ L + E G V +L TDRETG+P+G+GF E E +A L
Sbjct: 3 IYVGNLSYEVTQDTLSAVFAEYGTVKRVQLPTDRETGQPRGFGFVEMGSEAEEAAAIEAL 62
Query: 222 QSYDINGRQL*VDFAENDKGTDKPR-DQGQAG 314
+ GR L V+ A KPR D+G +G
Sbjct: 63 DGAEWMGRDLKVNKA-------KPREDRGPSG 87
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,035,034,504
Number of Sequences: 518415
Number of Extensions: 197035034504
Number of Successful Extensions: 1188428614
Number of sequences better than 0.0: 0
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