BLASTX 7.6.2
Query= UN53862 /QuerySize=642
(641 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G38470.1 | Symbols: | DNA repair protein RAD2... 294 5e-080
TAIR9_protein||AT5G38470.2 | Symbols: | DNA repair protein RAD2... 294 5e-080
TAIR9_protein||AT1G16190.1 | Symbols: | DNA repair protein RAD2... 190 6e-049
TAIR9_protein||AT1G79650.3 | Symbols: RAD23 | RAD23; damaged DNA... 190 8e-049
TAIR9_protein||AT1G79650.1 | Symbols: RAD23 | RAD23; damaged DNA... 190 8e-049
TAIR9_protein||AT1G79650.2 | Symbols: RAD23 | RAD23; damaged DNA... 188 4e-048
TAIR9_protein||AT3G02540.1 | Symbols: RAD23-3 | RAD23-3 (PUTATIV... 138 5e-033
TAIR9_protein||AT3G02540.2 | Symbols: RAD23-3 | RAD23-3 (PUTATIV... 138 5e-033
TAIR9_protein||AT5G16090.1 | Symbols: | INVOLVED IN: protein mo... 89 2e-018
TAIR9_protein||AT1G55060.1 | Symbols: UBQ12 | UBQ12 (UBIQUITIN 1... 49 2e-006
>TAIR9_protein||AT5G38470.1 | Symbols: | DNA repair protein RAD23, putative |
chr5:15404720-15407500 FORWARD
Length = 379
Score = 294 bits (750), Expect = 5e-080
Identities = 154/190 (81%), Positives = 163/190 (85%), Gaps = 3/190 (1%)
Frame = +3
Query: 72 MKIFVKTLKGTNFEIEVNPADTISETKRRIETHQGAQYPAAQQMLIHQGKVLKDETTLEQ 251
MKIFVKTL G+NFEIEV PAD +S+ K IET +GA+YPAA+QMLIHQGKVLKDETTLE+
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEE 60
Query: 252 NNVVDNSFIVIMLSKAKVSSSGASTASAPAPQAQPAQTVATPQVAAPTVSVPEPTSVAAT 431
NNVV+NSFIVIMLSK K S SGASTASAPAP A QTVATPQV+APT SVP PTS AT
Sbjct: 61 NNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTSGTAT 120
Query: 432 VATPTATATAASTQTDVYGQAASNLVAGNHLESTVQQILDMGGGSWDRDTVTRALRAAFN 611
A P ATAAS QTDVYGQAASNLVAG LESTVQQILDMGGGSWDRDTV RALRAAFN
Sbjct: 121 AAAP---ATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFN 177
Query: 612 NPERAVEYLY 641
NPERAVEYLY
Sbjct: 178 NPERAVEYLY 187
>TAIR9_protein||AT5G38470.2 | Symbols: | DNA repair protein RAD23, putative |
chr5:15404720-15407251 FORWARD
Length = 333
Score = 294 bits (750), Expect = 5e-080
Identities = 154/190 (81%), Positives = 163/190 (85%), Gaps = 3/190 (1%)
Frame = +3
Query: 72 MKIFVKTLKGTNFEIEVNPADTISETKRRIETHQGAQYPAAQQMLIHQGKVLKDETTLEQ 251
MKIFVKTL G+NFEIEV PAD +S+ K IET +GA+YPAA+QMLIHQGKVLKDETTLE+
Sbjct: 1 MKIFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAEYPAAKQMLIHQGKVLKDETTLEE 60
Query: 252 NNVVDNSFIVIMLSKAKVSSSGASTASAPAPQAQPAQTVATPQVAAPTVSVPEPTSVAAT 431
NNVV+NSFIVIMLSK K S SGASTASAPAP A QTVATPQV+APT SVP PTS AT
Sbjct: 61 NNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVPTSGTAT 120
Query: 432 VATPTATATAASTQTDVYGQAASNLVAGNHLESTVQQILDMGGGSWDRDTVTRALRAAFN 611
A P ATAAS QTDVYGQAASNLVAG LESTVQQILDMGGGSWDRDTV RALRAAFN
Sbjct: 121 AAAP---ATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAFN 177
Query: 612 NPERAVEYLY 641
NPERAVEYLY
Sbjct: 178 NPERAVEYLY 187
>TAIR9_protein||AT1G16190.1 | Symbols: | DNA repair protein RAD23, putative |
chr1:5543267-5545892 FORWARD
Length = 369
Score = 190 bits (482), Expect = 6e-049
Identities = 99/191 (51%), Positives = 131/191 (68%), Gaps = 7/191 (3%)
Frame = +3
Query: 72 MKIFVKTLKGTNFEIEVNPADTISETKRRIETHQGA-QYPAAQQMLIHQGKVLKDETTLE 248
MK+ VKTLKG++FEI V P DTI K+ IE Q YP QQ+LIH GKVLKDETTL
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLV 60
Query: 249 QNNVVDNSFIVIMLSKAKVSSSGASTASAPAPQAQPAQTVATPQVAAPTVSVPEPTSVAA 428
+N V + F+V+MLSK+K +SS S+ P + T+++ +AAP+ + S+A
Sbjct: 61 ENKVTEEGFLVVMLSKSKTASSAG--PSSTQPTSTTTSTISSTTLAAPSTT----QSIAV 114
Query: 429 TVATPTATATAASTQTDVYGQAASNLVAGNHLESTVQQILDMGGGSWDRDTVTRALRAAF 608
+ T + Q+D YGQAAS LV+G+ +E VQQI++MGGGSWD++TVTRALRAA+
Sbjct: 115 PASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAY 174
Query: 609 NNPERAVEYLY 641
NNPERAV+YLY
Sbjct: 175 NNPERAVDYLY 185
>TAIR9_protein||AT1G79650.3 | Symbols: RAD23 | RAD23; damaged DNA binding |
chr1:29972406-29975132 REVERSE
Length = 352
Score = 190 bits (481), Expect = 8e-049
Identities = 100/192 (52%), Positives = 131/192 (68%), Gaps = 7/192 (3%)
Frame = +3
Query: 72 MKIFVKTLKGTNFEIEVNPADTISETKRRIETHQGA-QYPAAQQMLIHQGKVLKDETTLE 248
MK+ VKTLKG++FEI V P+DTI K+ IE QG YP QQ+LIH GKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 249 QNNVVDNSFIVIMLSKAKVSSSGASTASAPAPQAQP-AQTVATPQVAAPTVSVPEPTSVA 425
+N V + F+V+MLSK+K S + + +QP + T ++ + AAP+ + P
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVP-- 118
Query: 426 ATVATPTATATAASTQTDVYGQAASNLVAGNHLESTVQQILDMGGGSWDRDTVTRALRAA 605
A+P + QTD YGQAAS LV+G+ LE VQQI++MGGGSWD++TVTRALRAA
Sbjct: 119 ---ASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAA 175
Query: 606 FNNPERAVEYLY 641
+NNPERAV+YLY
Sbjct: 176 YNNPERAVDYLY 187
>TAIR9_protein||AT1G79650.1 | Symbols: RAD23 | RAD23; damaged DNA binding |
chr1:29972406-29975132 REVERSE
Length = 372
Score = 190 bits (481), Expect = 8e-049
Identities = 100/192 (52%), Positives = 131/192 (68%), Gaps = 7/192 (3%)
Frame = +3
Query: 72 MKIFVKTLKGTNFEIEVNPADTISETKRRIETHQGA-QYPAAQQMLIHQGKVLKDETTLE 248
MK+ VKTLKG++FEI V P+DTI K+ IE QG YP QQ+LIH GKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 249 QNNVVDNSFIVIMLSKAKVSSSGASTASAPAPQAQP-AQTVATPQVAAPTVSVPEPTSVA 425
+N V + F+V+MLSK+K S + + +QP + T ++ + AAP+ + P
Sbjct: 61 ENKVTEEGFLVVMLSKSKSGGSAGQASVQTSSVSQPVSATTSSTKPAAPSTTQSSPVP-- 118
Query: 426 ATVATPTATATAASTQTDVYGQAASNLVAGNHLESTVQQILDMGGGSWDRDTVTRALRAA 605
A+P + QTD YGQAAS LV+G+ LE VQQI++MGGGSWD++TVTRALRAA
Sbjct: 119 ---ASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAA 175
Query: 606 FNNPERAVEYLY 641
+NNPERAV+YLY
Sbjct: 176 YNNPERAVDYLY 187
>TAIR9_protein||AT1G79650.2 | Symbols: RAD23 | RAD23; damaged DNA binding |
chr1:29972406-29975132 REVERSE
Length = 366
Score = 188 bits (475), Expect = 4e-048
Identities = 101/191 (52%), Positives = 125/191 (65%), Gaps = 11/191 (5%)
Frame = +3
Query: 72 MKIFVKTLKGTNFEIEVNPADTISETKRRIETHQGA-QYPAAQQMLIHQGKVLKDETTLE 248
MK+ VKTLKG++FEI V P+DTI K+ IE QG YP QQ+LIH GKVLKDET+L
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLV 60
Query: 249 QNNVVDNSFIVIMLSKAKVSSSGASTASAPAPQAQPAQTVATPQVAAPTVSVPEPTSVAA 428
+N V + F+V+MLSK+K SG S A + P + T S P P
Sbjct: 61 ENKVTEEGFLVVMLSKSK---SGGSAGQASVQPVSATTSSTKPAAPSTTQSSPVP----- 112
Query: 429 TVATPTATATAASTQTDVYGQAASNLVAGNHLESTVQQILDMGGGSWDRDTVTRALRAAF 608
A+P + QTD YGQAAS LV+G+ LE VQQI++MGGGSWD++TVTRALRAA+
Sbjct: 113 --ASPIPAQEQPAAQTDTYGQAASTLVSGSSLEQMVQQIMEMGGGSWDKETVTRALRAAY 170
Query: 609 NNPERAVEYLY 641
NNPERAV+YLY
Sbjct: 171 NNPERAVDYLY 181
>TAIR9_protein||AT3G02540.1 | Symbols: RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR
PROTEIN RAD23-3); damaged DNA binding | chr3:533095-536151 REVERSE
Length = 420
Score = 138 bits (345), Expect = 5e-033
Identities = 77/137 (56%), Positives = 98/137 (71%), Gaps = 6/137 (4%)
Frame = +3
Query: 72 MKIFVKTLKGTNFEIEVNPADTISETKRRIETHQGAQ-YPAAQQMLIHQGKVLKDETTLE 248
MKIFVKTLKGT+FEIEV P D++ + K+ IE+ QGA YPAA+QMLIHQGKVLKDETT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 249 QNNVVDNSFIVIMLSKAKVSSSGASTASAPAPQAQPAQTVATPQVAAPTVSVPEPTSVAA 428
+N V +NSFIVIM++K+K +S+ AS+ASA QA+ P + P++S P SV+A
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQAKS----IPPSTSQPSISPQTPASVSA 116
Query: 429 TVA-TPTATATAASTQT 476
VA PT A T T
Sbjct: 117 PVAPAPTRPPPPAPTPT 133
Score = 125 bits (312), Expect = 3e-029
Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 3/102 (2%)
Frame = +3
Query: 336 PAPQAQPAQTVATPQVAAPTVSVPEPTSVAATVATPTATATAASTQTDVYGQAASNLVAG 515
PAP PA AT V P +PEP + +TP + +Q DVYGQAASNL AG
Sbjct: 128 PAPTPTPAPVAATETVTTP---IPEPVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAG 184
Query: 516 NHLESTVQQILDMGGGSWDRDTVTRALRAAFNNPERAVEYLY 641
++LEST+QQILDMGGG+WDR+TV ALRAAFNNPERAVEYLY
Sbjct: 185 SNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLY 226
>TAIR9_protein||AT3G02540.2 | Symbols: RAD23-3 | RAD23-3 (PUTATIVE DNA REPAIR
PROTEIN RAD23-3) | chr3:533906-536151 REVERSE
Length = 300
Score = 138 bits (345), Expect = 5e-033
Identities = 77/137 (56%), Positives = 98/137 (71%), Gaps = 6/137 (4%)
Frame = +3
Query: 72 MKIFVKTLKGTNFEIEVNPADTISETKRRIETHQGAQ-YPAAQQMLIHQGKVLKDETTLE 248
MKIFVKTLKGT+FEIEV P D++ + K+ IE+ QGA YPAA+QMLIHQGKVLKDETT+E
Sbjct: 1 MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60
Query: 249 QNNVVDNSFIVIMLSKAKVSSSGASTASAPAPQAQPAQTVATPQVAAPTVSVPEPTSVAA 428
+N V +NSFIVIM++K+K +S+ AS+ASA QA+ P + P++S P SV+A
Sbjct: 61 ENKVAENSFIVIMMNKSKPASAAASSASAGTSQAKS----IPPSTSQPSISPQTPASVSA 116
Query: 429 TVA-TPTATATAASTQT 476
VA PT A T T
Sbjct: 117 PVAPAPTRPPPPAPTPT 133
Score = 125 bits (312), Expect = 3e-029
Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 3/102 (2%)
Frame = +3
Query: 336 PAPQAQPAQTVATPQVAAPTVSVPEPTSVAATVATPTATATAASTQTDVYGQAASNLVAG 515
PAP PA AT V P +PEP + +TP + +Q DVYGQAASNL AG
Sbjct: 128 PAPTPTPAPVAATETVTTP---IPEPVPATISSSTPAPDSAPVGSQGDVYGQAASNLAAG 184
Query: 516 NHLESTVQQILDMGGGSWDRDTVTRALRAAFNNPERAVEYLY 641
++LEST+QQILDMGGG+WDR+TV ALRAAFNNPERAVEYLY
Sbjct: 185 SNLESTIQQILDMGGGTWDRETVVLALRAAFNNPERAVEYLY 226
>TAIR9_protein||AT5G16090.1 | Symbols: | INVOLVED IN: protein modification
process; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation
elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940),
Ubiquitin-associated/translation elongation factor EF1B, N-terminal
(InterPro:IPR000449), Ubiquitin (InterPro:IPR000626), UV excision
repair protein Rad23, C-terminal (InterPro:IPR014761), UBA-like
(InterPro:IPR009060); BEST Arabidopsis thaliana protein match is:
RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3) (TAIR:AT3G02540.2); Has
550 Blast hits to 550 proteins in 137 species: Archae - 0; Bacteria -
0; Metazoa - 338; Fungi - 37; Plants - 110; Viruses - 26; Other
Eukaryotes - 39 (source: NCBI BLink). | chr5:5255797-5257230 REVERSE
Length = 172
Score = 89 bits (220), Expect = 2e-018
Identities = 45/76 (59%), Positives = 58/76 (76%), Gaps = 1/76 (1%)
Frame = +3
Query: 72 MKIFVKTLKGTNFEIEVNPADTISETKRRIETHQGA-QYPAAQQMLIHQGKVLKDETTLE 248
MKI VKTLKG FEIEV P D+++E K+ IET GA +YPAAQQ+LIH+ + L+DETT+E
Sbjct: 1 MKIIVKTLKGIRFEIEVKPNDSVAEVKKNIETVMGASEYPAAQQILIHKREKLRDETTME 60
Query: 249 QNNVVDNSFIVIMLSK 296
N V D S I I+++K
Sbjct: 61 ANKVFDKSVIAIIITK 76
>TAIR9_protein||AT1G55060.1 | Symbols: UBQ12 | UBQ12 (UBIQUITIN 12); protein
binding | chr1:20549533-20550225 FORWARD
Length = 231
Score = 49 bits (116), Expect = 2e-006
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +3
Query: 30 KPSLFSQVFLLNDTMKIFVKTLKGTNFEIEVNPADTISETKRRIETHQGAQYPAAQQMLI 209
K S V L M+IFVKTL G +EV +DTI K +I+ +G QQ LI
Sbjct: 139 KESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIS--PDQQRLI 196
Query: 210 HQGKVLKDETTLEQNNVVDNSFIVIML 290
GK +D TL N+ S + ++L
Sbjct: 197 FAGKQHEDGRTLADYNIQKESTLHLVL 223
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,232,229,610
Number of Sequences: 33410
Number of Extensions: 25232229610
Number of Successful Extensions: 809227561
Number of sequences better than 0.0: 0
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