BLASTX 7.6.2
Query= UN54327 /QuerySize=682
(681 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G30620.1 | Symbols: | histone H1.2 | chr2:130... 253 7e-068
TAIR9_protein||AT1G06760.1 | Symbols: | histone H1, putative | ... 215 3e-056
TAIR9_protein||AT2G18050.1 | Symbols: HIS1-3 | HIS1-3 (HISTONE H... 101 7e-022
TAIR9_protein||AT2G18050.2 | Symbols: HIS1-3 | HIS1-3 (HISTONE H... 76 1e-014
TAIR9_protein||AT3G18035.1 | Symbols: HON4 | HON4; DNA binding |... 66 2e-011
TAIR9_protein||AT1G48620.1 | Symbols: HON5 | HON5 (High Mobility... 64 8e-011
TAIR9_protein||AT1G49950.3 | Symbols: TRB1, ATTRB1 | DNA-binding... 55 3e-008
TAIR9_protein||AT1G49950.2 | Symbols: TRB1, ATTRB1 | DNA-binding... 55 3e-008
TAIR9_protein||AT1G49950.1 | Symbols: TRB1, ATTRB1 | DNA-binding... 55 3e-008
TAIR9_protein||AT1G72740.2 | Symbols: | DNA-binding family prot... 55 4e-008
TAIR9_protein||AT1G17520.1 | Symbols: | DNA-binding protein, pu... 53 1e-007
TAIR9_protein||AT1G72740.1 | Symbols: | DNA-binding family prot... 52 2e-007
>TAIR9_protein||AT2G30620.1 | Symbols: | histone H1.2 | chr2:13045360-13046267
FORWARD
Length = 274
Score = 253 bits (646), Expect = 7e-068
Identities = 161/223 (72%), Positives = 169/223 (75%), Gaps = 22/223 (9%)
Frame = +2
Query: 56 MSTEEE--PKVVESGDAEAAATVTTTEKKPAAK-AKAKKTKEAK--KKPAAAAAP-RKRT 217
MS EEE P V+SG A+ TV + EKKPAAK K+KKT AK KKP AAAP +K+T
Sbjct: 1 MSIEEENVPTTVDSGAAD--TTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKT 58
Query: 218 TSSHPPYEEMIKDAIVTLKERTGSSQYAIQKFIEEKQKSLPPTFRKLLLVNLRRLVASGK 397
TSSHP YEEMIKDAIVTLKERTGSSQYAIQKFIEEK KSLPPTFRKLLLVNL+RLVAS K
Sbjct: 59 TSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEK 118
Query: 398 LVKVKASFKIPSAASAKPAAATKPVKKKPAAAVTKPKGKAAAAPA-KKAKPAAKGTKKPA 574
LVKVKASFKIPSA SA PVKKK A V KPKGK AAA A KAK AAKGTKKPA
Sbjct: 119 LVKVKASFKIPSARSAATPKPAAPVKKK-ATVVAKPKGKVAAAVAPAKAKAAAKGTKKPA 177
Query: 575 A--------AAKPKAKTTTTKAAAKPKTKSVAAVSKTKAVAAK 679
A AKPKAK T AAKPK+KSVAAVSKTKAVAAK
Sbjct: 178 AKVVAKAKVTAKPKAKVT----AAKPKSKSVAAVSKTKAVAAK 216
Score = 48 bits (113), Expect = 4e-006
Identities = 63/232 (27%), Positives = 85/232 (36%), Gaps = 26/232 (11%)
Frame = +2
Query: 26 KKNFFKSLKKMSTEEEPKVVESGDAEAAATVTTTEKKPAAKAKAK------KTKEAKKKP 187
KK K K T + A A TT P + K K + +
Sbjct: 26 KKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQY 85
Query: 188 AAAAAPRKRTTSSHPPYEEMIKDAIVTLKERTGSSQYAIQKFIEEKQKSLPPTFRKLLLV 367
A ++ S P + +++ +V LK S +K ++ K P+ R
Sbjct: 86 AIQKFIEEKHKSLPPTFRKLL---LVNLKRLVAS-----EKLVKVKASFKIPSARSAATP 137
Query: 368 NLRRLVASGKLVKVKASFKIPSAASAKPAAATKPVKKKPAAAV-------TKPKGKAAAA 526
V V K K+ +A + A A KKPAA V KPK K AA
Sbjct: 138 KPAAPVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAA 197
Query: 527 PAKKAKPAAKGTKKPAAAAKPKAKTTTTKAAAKPKT----KSVAAVSKTKAV 670
K+K A +K A AAKPKAK KA+ K VAA +K AV
Sbjct: 198 -KPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAV 248
>TAIR9_protein||AT1G06760.1 | Symbols: | histone H1, putative |
chr1:2076687-2077616 REVERSE
Length = 275
Score = 215 bits (545), Expect = 3e-056
Identities = 133/218 (61%), Positives = 149/218 (68%), Gaps = 14/218 (6%)
Frame = +2
Query: 47 LKKMSTEEEPKVVESGDAEAAATVTTTEKKPAAKA-KAKKTKEAKKKPAAAAAPRKRTTS 223
+ ++ E + + A+A T EKKPAAK K K KE K+K AAAP+KRT S
Sbjct: 1 MSEVEIENAATIEGNTAADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVS 60
Query: 224 SHPPYEEMIKDAIVTLKERTGSSQYAIQKFIEEKQKSLPPTFRKLLLVNLRRLVASGKLV 403
SHP YEEMIKDAIVTLKERTGSSQYAIQKFIEEK+K LPPTFRKLLL+NL+RLVASGKLV
Sbjct: 61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLV 120
Query: 404 KVKASFKIPSA---ASAKPAAATK--PVKKKPA-AAVTKPKGKAAAAPAKKAKPAAKGTK 565
KVKASFK+PSA AS+ AAA K P KKKPA AVTK K K AAA K A
Sbjct: 121 KVKASFKLPSASAKASSPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAV---- 176
Query: 566 KPAAAAKPKAKTTTTKAAAKPKTKSVAAVSKTKAVAAK 679
KP AA AK T KA AKP ++ AA +K KAV AK
Sbjct: 177 KPKTAA---AKKVTAKAKAKPVPRATAAATKRKAVDAK 211
>TAIR9_protein||AT2G18050.1 | Symbols: HIS1-3 | HIS1-3 (HISTONE H1-3); DNA
binding / nucleosomal DNA binding | chr2:7846095-7846670 FORWARD
Length = 168
Score = 101 bits (249), Expect = 7e-022
Identities = 65/161 (40%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Frame = +2
Query: 179 KKPAAAAAPRKRTTSSHPPYEEMIKDAIVTLKERTGSSQYAIQKFIEEKQKS-LPPTFRK 355
KK AA PRK T++HPPY +MIK+A++ LKE+ GSS YAI K IEEK KS LP +FRK
Sbjct: 8 KKTPAAKKPRKPKTTTHPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRK 67
Query: 356 LLLVNLRRLVASGKLVKVKASFKIPSAASAKPAAATKPVK---KKPAAAVTKPKGKAAAA 526
L + L+ VA GKLVK++AS+K+ K K K+ +TK ++
Sbjct: 68 TLSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTR 127
Query: 527 PAKKAKPAAKGTKKPAAAAKPKAKTTTTKAAAKPKTKSVAA 649
P KK K KK + K+ + K K+ AA
Sbjct: 128 P-KKTVSVNKQEKKRKVKKARQPKSIKSSVGKKKAMKASAA 167
>TAIR9_protein||AT2G18050.2 | Symbols: HIS1-3 | HIS1-3 (HISTONE H1-3); DNA
binding / nucleosomal DNA binding | chr2:7846254-7846670 FORWARD
Length = 139
Score = 76 bits (186), Expect = 1e-014
Identities = 53/139 (38%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Frame = +2
Query: 245 MIKDAIVTLKERTGSSQYAIQKFIEEKQKS-LPPTFRKLLLVNLRRLVASGKLVKVKASF 421
MIK+A++ LKE+ GSS YAI K IEEK KS LP +FRK L + L+ VA GKLVK++AS+
Sbjct: 1 MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASY 60
Query: 422 KIPSAASAKPAAATKPVK---KKPAAAVTKPKGKAAAAPAKKAKPAAKGTKKPAAAAKPK 592
K+ K K K+ +TK ++ P KK K KK +
Sbjct: 61 KLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTRP-KKTVSVNKQEKKRKVKKARQ 119
Query: 593 AKTTTTKAAAKPKTKSVAA 649
K+ + K K+ AA
Sbjct: 120 PKSIKSSVGKKKAMKASAA 138
>TAIR9_protein||AT3G18035.1 | Symbols: HON4 | HON4; DNA binding |
chr3:6169384-6171558 REVERSE
Length = 481
Score = 66 bits (160), Expect = 2e-011
Identities = 49/146 (33%), Positives = 64/146 (43%), Gaps = 8/146 (5%)
Frame = +2
Query: 227 HPPYEEMIKDAIVTLKERTGSSQYAIQKFIEEKQKSLPPTFRKLLLVNLRRLVASGKLVK 406
HPPY EMI AI L E GSS+ AI ++IE L LL +L+ L SG L
Sbjct: 65 HPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVLSM 124
Query: 407 VKASFKI-----PSAASAKPAAATKPVKKKPAAAVTKPKGKAAAAPAKKAKPAAKGTKKP 571
VK S+KI P A+ A AAA P + + A ++P +G +P
Sbjct: 125 VKKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRGRGRP 184
Query: 572 AAAAKPKAKTTTTKAAAKPKTKSVAA 649
KPK ++ P T V A
Sbjct: 185 ---PKPKPESQPQPLQQLPPTNQVQA 207
>TAIR9_protein||AT1G48620.1 | Symbols: HON5 | HON5 (High Mobility Group Family A
5); DNA binding | chr1:17974148-17976301 REVERSE
Length = 480
Score = 64 bits (154), Expect = 8e-011
Identities = 42/125 (33%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Frame = +2
Query: 224 SHPPYEEMIKDAIVTLKERTGSSQYAIQKFIEEKQKSLPPTFRKLLLVNLRRLVASGKLV 403
SHPPY +MI AI L E GSS+ AI ++IE +P LL +L+ L SG LV
Sbjct: 74 SHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILV 133
Query: 404 KVKASFKIPSAASAKPAAATKPVKKKPAAAVTKPKGKAAAAPAKKAKPAAKGTKKPAAAA 583
VK S+K+ S P + P + P + + + P + + T K
Sbjct: 134 MVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLAS--STPQTIKRGRGR 191
Query: 584 KPKAK 598
PKAK
Sbjct: 192 PPKAK 196
>TAIR9_protein||AT1G49950.3 | Symbols: TRB1, ATTRB1 | DNA-binding protein,
putative | chr1:18494439-18496713 REVERSE
Length = 301
Score = 55 bits (132), Expect = 3e-008
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 8/79 (10%)
Frame = +2
Query: 221 SSHPP-------YEEMIKDAIVTLKERTGSSQYAIQKFIEEKQKSLPPTFRKLLLVNLRR 379
SS+PP + +I +AI TLKE G ++ I +IE+ Q PP F++LL L+
Sbjct: 109 SSNPPPRRPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIED-QYHAPPDFKRLLSTKLKY 167
Query: 380 LVASGKLVKVKASFKIPSA 436
L + GKLVKVK ++IP++
Sbjct: 168 LTSCGKLVKVKRKYRIPNS 186
>TAIR9_protein||AT1G49950.2 | Symbols: TRB1, ATTRB1 | DNA-binding protein,
putative | chr1:18494439-18496713 REVERSE
Length = 301
Score = 55 bits (132), Expect = 3e-008
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 8/79 (10%)
Frame = +2
Query: 221 SSHPP-------YEEMIKDAIVTLKERTGSSQYAIQKFIEEKQKSLPPTFRKLLLVNLRR 379
SS+PP + +I +AI TLKE G ++ I +IE+ Q PP F++LL L+
Sbjct: 109 SSNPPPRRPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIED-QYHAPPDFKRLLSTKLKY 167
Query: 380 LVASGKLVKVKASFKIPSA 436
L + GKLVKVK ++IP++
Sbjct: 168 LTSCGKLVKVKRKYRIPNS 186
>TAIR9_protein||AT1G49950.1 | Symbols: TRB1, ATTRB1 | DNA-binding protein,
putative | chr1:18494439-18496713 REVERSE
Length = 301
Score = 55 bits (132), Expect = 3e-008
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 8/79 (10%)
Frame = +2
Query: 221 SSHPP-------YEEMIKDAIVTLKERTGSSQYAIQKFIEEKQKSLPPTFRKLLLVNLRR 379
SS+PP + +I +AI TLKE G ++ I +IE+ Q PP F++LL L+
Sbjct: 109 SSNPPPRRPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIED-QYHAPPDFKRLLSTKLKY 167
Query: 380 LVASGKLVKVKASFKIPSA 436
L + GKLVKVK ++IP++
Sbjct: 168 LTSCGKLVKVKRKYRIPNS 186
>TAIR9_protein||AT1G72740.2 | Symbols: | DNA-binding family protein / histone
H1/H5 family protein | chr1:27380499-27382687 REVERSE
Length = 282
Score = 55 bits (131), Expect = 4e-008
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +2
Query: 218 TSSHPPYEEMIKDAIVTLKERTGSSQYAIQKFIEEKQKSLPPTFRKLLLVNLRRLVASGK 397
T + P Y+ +I +A+ L + GS +I FIE + + +PP FR++L LRRL A K
Sbjct: 117 TKNAPRYDGVIFEALSALADGNGSDVSSIYHFIEPRHE-VPPNFRRILSTRLRRLAAQSK 175
Query: 398 LVKVKASFKIPSAASAK 448
L K++ +KIP + K
Sbjct: 176 LEKIQNFYKIPDPSGTK 192
>TAIR9_protein||AT1G17520.1 | Symbols: | DNA-binding protein, putative |
chr1:6024959-6027224 REVERSE
Length = 297
Score = 53 bits (126), Expect = 1e-007
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +2
Query: 230 PPYEEMIKDAIVTLKERTGSSQYAIQKFIEEKQKSLPPTFRKLLLVNLRRLVASGKLVKV 409
P Y+ MI +A+ L + GS AI FIE++Q+ +PP FR++L LRRL A GKL KV
Sbjct: 128 PRYDGMIFEALSNLTDANGSDVSAIFNFIEQRQE-VPPNFRRMLSSRLRRLAAQGKLEKV 186
>TAIR9_protein||AT1G72740.1 | Symbols: | DNA-binding family protein / histone
H1/H5 family protein | chr1:27380499-27382687 REVERSE
Length = 288
Score = 52 bits (124), Expect = 2e-007
Identities = 47/153 (30%), Positives = 63/153 (41%), Gaps = 26/153 (16%)
Frame = +2
Query: 77 KVVESGDAEAA-ATVTTTEKKPAAKAKAKKTKEAKKKPAAAAAPRKRT----------TS 223
KV E GD AA A T +P P P +RT T
Sbjct: 73 KVKEEGDTPAADANDAVTIPRPI--------------PTIPPPPGRRTLPSELIPDENTK 118
Query: 224 SHPPYEEMIKDAIVTLKERTGSSQYAIQKFIEEKQKSLPPTFRKLLLVNLRRLVASGKLV 403
+ P Y+ +I +A+ L + GS +I FIE + + +PP FR++L LRRL A KL
Sbjct: 119 NAPRYDGVIFEALSALADGNGSDVSSIYHFIEPRHE-VPPNFRRILSTRLRRLAAQSKLE 177
Query: 404 KVKASFKIPSAASAKPAAATKPVKKKPAAAVTK 502
KV I + + TK KP TK
Sbjct: 178 KVSTFKSIQNFYKIPDPSGTKIGVPKPKETHTK 210
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,410,584,575
Number of Sequences: 33410
Number of Extensions: 25410584575
Number of Successful Extensions: 814813375
Number of sequences better than 0.0: 0
|
