BLASTX 7.6.2
Query= UN54451 /QuerySize=703
(702 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G55140.1 | Symbols: | RNA binding / ribonucle... 341 3e-094
TAIR9_protein||AT3G13740.1 | Symbols: | URF 4-related | chr3:45... 288 3e-078
TAIR9_protein||AT1G55140.2 | Symbols: | RNA binding / ribonucle... 228 2e-060
>TAIR9_protein||AT1G55140.1 | Symbols: | RNA binding / ribonuclease III |
chr1:20572503-20574332 REVERSE
Length = 238
Score = 341 bits (874), Expect = 3e-094
Identities = 186/232 (80%), Positives = 199/232 (85%), Gaps = 22/232 (9%)
Frame = +2
Query: 35 AAAGGSASLVRAALDTKPKLPLRYNPNAPRNVKRNPNSPSSFVPP--PSSSSPATVLTTT 208
A S+++VRAALDT+PK LRYNPNAPRNVK+N N SSFVPP PSSSSPAT L+
Sbjct: 2 AILSASSTIVRAALDTQPK--LRYNPNAPRNVKKNSNL-SSFVPPSSPSSSSPATNLSV- 57
Query: 209 GTSVSSVSDLLKRPASKEDVGG----------EWFPSPPKVNKPRSVFNAASLAYIGDSI 358
SVSDLLKRPASK D+G +WFPSPPKV KPRSVFNAASLAYIGDSI
Sbjct: 58 -----SVSDLLKRPASK-DIGDGFDDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSI 111
Query: 359 YEIYARRHFLFPPLSIEEYNDRVRAVVRCEAQYALLHKLLDEDFLTKDEREILRWGKNVG 538
YEIYARRHFLFPPLSIEEYNDRVRAVVRCEAQYALL KL+D+DFLTKDER+ILRWGKNVG
Sbjct: 112 YEIYARRHFLFPPLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERDILRWGKNVG 171
Query: 539 SVKTRSTRRAGVAVYNKASSLETLIGYLYLANGKRLEEIMQKLGFSSGSSTE 694
SVKTRSTRRAGVAVYNKASSLETLIGYLYL+NGKRLEE+MQKLGFSSGSSTE
Sbjct: 172 SVKTRSTRRAGVAVYNKASSLETLIGYLYLSNGKRLEEMMQKLGFSSGSSTE 223
>TAIR9_protein||AT3G13740.1 | Symbols: | URF 4-related | chr3:4504310-4505937
FORWARD
Length = 248
Score = 288 bits (736), Expect = 3e-078
Identities = 151/219 (68%), Positives = 178/219 (81%), Gaps = 5/219 (2%)
Frame = +2
Query: 50 SASLVRAALDTKPKLPLRYNPNAPRNVKRNPNSPSSFVPPPS-SSSPATVLTTTGTSVSS 226
++S VRAALDT+P+LP YNPNAPR VK+ PN +SF+PPPS + SP ++
Sbjct: 6 ASSTVRAALDTQPRLP--YNPNAPRKVKKIPNG-NSFLPPPSPAPSPGISISVADLLKRP 62
Query: 227 VSDLLKRPASKEDVGGE-WFPSPPKVNKPRSVFNAASLAYIGDSIYEIYARRHFLFPPLS 403
S + +G E W PSPPK+ KPRSVFN ASLA+IGDSIYE+YARRHFLFPPLS
Sbjct: 63 SSKEITVDVDDTYMGYETWSPSPPKLEKPRSVFNPASLAFIGDSIYELYARRHFLFPPLS 122
Query: 404 IEEYNDRVRAVVRCEAQYALLHKLLDEDFLTKDEREILRWGKNVGSVKTRSTRRAGVAVY 583
IE+YNDRVRAVVRCEAQYALL+KL+D+DFLTK+ER+ILRWGKN+GS +TR+ RRAG AVY
Sbjct: 123 IEDYNDRVRAVVRCEAQYALLNKLVDDDFLTKEERDILRWGKNLGSARTRTRRRAGNAVY 182
Query: 584 NKASSLETLIGYLYLANGKRLEEIMQKLGFSSGSSTEIM 700
NKASSLETLIGYLYL NGKRLE+IM+KLGFSS SSTEI+
Sbjct: 183 NKASSLETLIGYLYLTNGKRLEKIMEKLGFSSDSSTEIV 221
>TAIR9_protein||AT1G55140.2 | Symbols: | RNA binding / ribonuclease III |
chr1:20572788-20574332 REVERSE
Length = 171
Score = 228 bits (581), Expect = 2e-060
Identities = 129/177 (72%), Positives = 140/177 (79%), Gaps = 22/177 (12%)
Frame = +2
Query: 35 AAAGGSASLVRAALDTKPKLPLRYNPNAPRNVKRNPNSPSSFVPP--PSSSSPATVLTTT 208
A S+++VRAALDT+PK LRYNPNAPRNVK+N N SSFVPP PSSSSPAT L+
Sbjct: 2 AILSASSTIVRAALDTQPK--LRYNPNAPRNVKKNSNL-SSFVPPSSPSSSSPATNLSV- 57
Query: 209 GTSVSSVSDLLKRPASKEDVGG----------EWFPSPPKVNKPRSVFNAASLAYIGDSI 358
SVSDLLKRPASK D+G +WFPSPPKV KPRSVFNAASLAYIGDSI
Sbjct: 58 -----SVSDLLKRPASK-DIGDGFDDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSI 111
Query: 359 YEIYARRHFLFPPLSIEEYNDRVRAVVRCEAQYALLHKLLDEDFLTKDEREILRWGK 529
YEIYARRHFLFPPLSIEEYNDRVRAVVRCEAQYALL KL+D+DFLTKDER I G+
Sbjct: 112 YEIYARRHFLFPPLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERSIYFGGE 168
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,454,412,339
Number of Sequences: 33410
Number of Extensions: 25454412339
Number of Successful Extensions: 814904157
Number of sequences better than 0.0: 0
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