BLASTX 7.6.2
Query= UN54811 /QuerySize=734
(733 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1... 198 3e-051
TAIR9_protein||AT3G18610.1 | Symbols: ATRANGAP1, PARLL1 | ATRANG... 148 5e-036
TAIR9_protein||AT1G72800.1 | Symbols: | nuM1-related | chr1:273... 82 4e-016
TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / ... 65 4e-011
TAIR9_protein||AT5G51730.1 | Symbols: | FUNCTIONS IN: molecular... 61 7e-010
TAIR9_protein||AT1G73490.1 | Symbols: | RNA recognition motif (... 60 1e-009
TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding | ch... 52 3e-007
TAIR9_protein||AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine... 48 5e-006
TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (... 48 6e-006
>TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1; nucleic acid
binding / nucleotide binding | chr1:18098186-18101422 FORWARD
Length = 558
Score = 198 bits (503), Expect = 3e-051
Identities = 103/156 (66%), Positives = 126/156 (80%), Gaps = 12/156 (7%)
Frame = +1
Query: 94 RDGGR---FGHVEFATAEAAQKALQLHGKPLLGRDIRLDVA---AERGDRPAYTPQSGNG 255
RD G FGHVEFA++E AQKAL+ HG+PLLGR+IRLD+A ERG+RPA+TPQS
Sbjct: 332 RDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIAQERGERGERPAFTPQS--- 388
Query: 256 GGNFRSGGGGGGDGQKIFVKGFDASLAEDDIRHALTEHFTSCGEITRVSVPMDRETGSSK 435
GNFRS GG GGD +KIFVKGFDASL+EDDI++ L EHF+SCGEI VSVP+DR+TG+SK
Sbjct: 389 -GNFRS-GGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSK 446
Query: 436 GIAFIDFKEAAEKAFDLNGTEAAGG-YLVVDESKPR 540
GIA+++F E EKA +LNG++ GG YLVVDE +PR
Sbjct: 447 GIAYLEFSEGKEKALELNGSDMGGGFYLVVDEPRPR 482
>TAIR9_protein||AT3G18610.1 | Symbols: ATRANGAP1, PARLL1 | ATRANGAP1 (RAN
GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding / nucleotide binding
| chr3:6404270-6407822 REVERSE
Length = 637
Score = 148 bits (372), Expect = 5e-036
Identities = 73/145 (50%), Positives = 101/145 (69%), Gaps = 10/145 (6%)
Frame = +1
Query: 109 FGHVEFATAEAAQKALQLHGKPLLGRDIRLDVAAERGDRPAYTPQSGNGGGNFRSGGGGG 288
+GH+EFA+ E AQKAL+++GK LLGRD+RLD+A ERG TP++ N G G G
Sbjct: 426 YGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANERG-----TPRNSNPGRK-----GEG 475
Query: 289 GDGQKIFVKGFDASLAEDDIRHALTEHFTSCGEITRVSVPMDRETGSSKGIAFIDFKEAA 468
+ I+V+GF +SL ED+I+ L HF+ CGE+TRV VP DRETG+S+G A+ID
Sbjct: 476 SQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGF 535
Query: 469 EKAFDLNGTEAAGGYLVVDESKPRD 543
++A L+G+E GG + V+ES+PRD
Sbjct: 536 DEALQLSGSEIGGGNIHVEESRPRD 560
>TAIR9_protein||AT1G72800.1 | Symbols: | nuM1-related | chr1:27397266-27398273
FORWARD
Length = 336
Score = 82 bits (200), Expect = 4e-016
Identities = 43/84 (51%), Positives = 56/84 (66%)
Frame = +1
Query: 286 GGDGQKIFVKGFDASLAEDDIRHALTEHFTSCGEITRVSVPMDRETGSSKGIAFIDFKEA 465
G +G+ V GFDASL DDI+ AL+++F+S GEITRV VP TG S G A+ID KE
Sbjct: 230 GVNGRSFSVTGFDASLPVDDIKSALSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDLKEG 289
Query: 466 AEKAFDLNGTEAAGGYLVVDESKP 537
AEKA +L + G LVV +++P
Sbjct: 290 AEKALELGRHDVGGWDLVVGKAEP 313
>TAIR9_protein||AT5G03480.1 | Symbols: | nucleic acid binding / nucleotide
binding | chr5:869208-870855 REVERSE
Length = 322
Score = 65 bits (157), Expect = 4e-011
Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Frame = +1
Query: 304 IFVKGFDASLAEDDIRHALTEHFTSCGEITRVSVPMDRETGSSKGIAFIDFK--EAAEKA 477
I V+G+D SL E +R ALT+HF SCGEIT++ VP D + K ++F+ K A +KA
Sbjct: 26 ICVEGYDTSLKEYPLRLALTKHFASCGEITQIYVPRDFKKKILKSVSFMWIKGEGAEDKA 85
Query: 478 FDLNGTEAAGGYLVVDESKPR 540
L+GT+ GG+ V+ + KP+
Sbjct: 86 LQLSGTD-VGGWTVIVKPKPK 105
Score = 58 bits (139), Expect = 5e-009
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = +1
Query: 304 IFVKGFDASLAEDDIRHALTEHFTSCGEITRVSVPMDRETGSSKGIAF--IDFKEAAEKA 477
I V+G+D SL + + L +HF SCGEI V VP D E G K +AF I+ + A +KA
Sbjct: 115 ISVEGYDTSLQKYLLELILEKHFDSCGEIRHVYVPTDYERGVLKSVAFLRIEGEGAEDKA 174
Query: 478 FDLNGTEAAGGYLVVDESK 534
L+GT+ G ++V S+
Sbjct: 175 LQLSGTDVVGWTVIVKPSE 193
Score = 49 bits (116), Expect = 2e-006
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Frame = +1
Query: 310 VKGFDASLAEDDIRHALTEHFTSCGEITRVSVPMDRETGSSKGIAFIDFKEAAEKAFDLN 489
V G+DASL E DI+ AL +HF+SCGEI +V+V SS + + +KA +L+
Sbjct: 217 VTGYDASLPEIDIQMALCKHFSSCGEIWQVTVL------SSTAFVSLRGERCVDKALELS 270
Query: 490 GTEAAGGYLVVDE 528
G LVV+E
Sbjct: 271 GCNMGERTLVVNE 283
>TAIR9_protein||AT5G51730.1 | Symbols: | FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein match is:
ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1); nucleic acid binding /
nucleotide binding (TAIR:AT3G18610.1); Has 68 Blast hits to 54 proteins
in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants
- 61; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). |
chr5:21011418-21013657 FORWARD
Length = 413
Score = 61 bits (146), Expect = 7e-010
Identities = 34/88 (38%), Positives = 48/88 (54%)
Frame = +1
Query: 280 GGGGDGQKIFVKGFDASLAEDDIRHALTEHFTSCGEITRVSVPMDRETGSSKGIAFIDFK 459
GG D IFVKG+D+SL E+D+ AL EHF+ CG I+R+ + + FI
Sbjct: 187 GGRYDCGTIFVKGYDSSLGENDLARALLEHFSPCGMISRIYFQTNDAGEAVLKHVFIVML 246
Query: 460 EAAEKAFDLNGTEAAGGYLVVDESKPRD 543
+ E A LNG++ G L V ++ RD
Sbjct: 247 QGTEDALKLNGSDMGGCNLEVHDATERD 274
>TAIR9_protein||AT1G73490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:27633496-27634867 REVERSE
Length = 260
Score = 60 bits (144), Expect = 1e-009
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 262 NFRSGGGGGGDGQKIFVKGFDASLAEDDIRHALTEHFTSCGEITRVSVPMDRETGSSKGI 441
NF G +FV+GFD S +I+ AL HF+SCG++ + VP+ TG+S G
Sbjct: 105 NFDDKAHLGVSDSALFVQGFDTSHPRHEIKTALWNHFSSCGKVYLIYVPIACSTGASVGY 164
Query: 442 AFIDFKEAAEKAFDLNGTEAAG 507
AFID K K LNG+ G
Sbjct: 165 AFIDMKNET-KGLTLNGSHLGG 185
>TAIR9_protein||AT5G03495.1 | Symbols: | nucleotide binding |
chr5:873804-875025 REVERSE
Length = 227
Score = 52 bits (123), Expect = 3e-007
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Frame = +1
Query: 301 KIFVKGFDASLAEDDIRHALTEHFTSCGEITRVSVPMDRETGSSKGIAFIDFKEAAEKAF 480
++ V G+D + + DI+ AL EHF+SCGE+T+V V S G ++ + +KA
Sbjct: 129 RVRVTGYDTCVPKIDIQMALCEHFSSCGEVTQVVV-----LPSGSGSIYLQGERCEDKAL 183
Query: 481 DLNGTEAAGGYLVVD 525
LNG + G LVV+
Sbjct: 184 QLNGCKMGGMNLVVE 198
>TAIR9_protein||AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich
RNA-binding protein 3); ATP binding / RNA binding |
chr5:24560870-24562152 FORWARD
Length = 310
Score = 48 bits (113), Expect = 5e-006
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Frame = +1
Query: 301 KIFVKGFDASLAEDDIRHALTEHFTSCGEITRVSVPMDRETGSSKGIAFIDF--KEAAEK 474
K+F+ G S+ ED +R A FT GE+ V +DRETG S+G F+ F EAA
Sbjct: 41 KLFIGGMAYSMDEDSLREA----FTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 475 AFD-LNGTEAAGGYLVVDESKPR 540
A L+G + G + V+ + R
Sbjct: 97 AIQALDGRDLHGRVVKVNYANDR 119
>TAIR9_protein||AT3G09160.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:2805779-2806912 REVERSE
Length = 199
Score = 48 bits (112), Expect = 6e-006
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +1
Query: 292 DGQKIFVKGFDASLAEDDIRHALTEHFTSCGEITRVSVPMDRETGSSKGIAFIDF--KEA 465
D ++I V G+D L + + L + F+ CGEIT V +P R + S AFI F +
Sbjct: 21 DIERISVTGYDIELPREHVESELKKLFSPCGEITDVHIPETRNS-SLWSHAFIYFVGEGT 79
Query: 466 AEKAFDLNGTEAAGGYLVVDESKP 537
A+KA LNG++ GG+ V E+ P
Sbjct: 80 ADKALQLNGSD-MGGWTVDAEADP 102
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,541,708,500
Number of Sequences: 33410
Number of Extensions: 25541708500
Number of Successful Extensions: 814969321
Number of sequences better than 0.0: 0
|
