BLASTX 7.6.2
Query= UN55126 /QuerySize=777
(776 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapie... 211 5e-054
sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus muscul... 210 9e-054
sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norve... 210 9e-054
sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabd... 174 5e-043
sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schiz... 133 2e-030
sp|Q55GD6|SF3B4_DICDI Splicing factor 3B subunit 4 OS=Dictyostel... 124 6e-028
sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dicty... 66 2e-010
sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=H... 61 7e-009
sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=S... 56 2e-007
sp|Q03250|GRP7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabi... 55 4e-007
sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus ... 55 5e-007
sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=S... 55 5e-007
sp|Q9T0K5|LRX3_ARATH Leucine-rich repeat extensin-like protein 3... 52 4e-006
sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragmen... 52 5e-006
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4
PE=1 SV=1
Length = 424
Score = 211 bits (536), Expect = 5e-054
Identities = 115/203 (56%), Positives = 133/203 (65%), Gaps = 17/203 (8%)
Frame = +2
Query: 2 ANLFIDNLDPDVDEKILYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAI 181
AN+FI NLDP++DEK+LYDTFSAFG I PKIMRDPDTGNS+G+ FI++ SFDASDAAI
Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 182 EAMTGQYLCNRQITVSYAYKKYTKGERHGTPAERLLAATNPVTQKSRPHTLFASGPPTHP 361
EAM GQYLCNR ITVSYA+KK +KGERHG+ AERLLAA NP++Q RPH LFA PP P
Sbjct: 160 EAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPP-P 218
Query: 362 NAPQ------ANGIPRPFVNGGMPPVSIPGPRPTPPPPPPQVYQTQPPPSWQPQPHQQQH 523
+AP +G+P P G PP S P P P P PP + PPP P
Sbjct: 219 SAPNPVVSSLGSGLPPP---GMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPP------- 268
Query: 524 GLAVPPPCSSVLPRECRRHHLHS 592
G A P S+ P H HS
Sbjct: 269 GAAGHGPPSAGTPGAGHPGHGHS 291
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4
PE=2 SV=1
Length = 424
Score = 210 bits (534), Expect = 9e-054
Identities = 107/173 (61%), Positives = 124/173 (71%), Gaps = 10/173 (5%)
Frame = +2
Query: 2 ANLFIDNLDPDVDEKILYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAI 181
AN+FI NLDP++DEK+LYDTFSAFG I PKIMRDPDTGNS+G+ FI++ SFDASDAAI
Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 182 EAMTGQYLCNRQITVSYAYKKYTKGERHGTPAERLLAATNPVTQKSRPHTLFASGPPTHP 361
EAM GQYLCNR ITVSYA+KK +KGERHG+ AERLLAA NP++Q RPH LFA PP P
Sbjct: 160 EAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPP-P 218
Query: 362 NAPQ------ANGIPRPFVNGGMPPVSIPGPRPTPPPPPPQVYQTQPPPSWQP 502
+AP +G+P P G PP S P P P P PP + PPP P
Sbjct: 219 SAPNPVVSSLGSGLPPP---GMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPP 268
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4
PE=2 SV=1
Length = 424
Score = 210 bits (534), Expect = 9e-054
Identities = 107/173 (61%), Positives = 124/173 (71%), Gaps = 10/173 (5%)
Frame = +2
Query: 2 ANLFIDNLDPDVDEKILYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAI 181
AN+FI NLDP++DEK+LYDTFSAFG I PKIMRDPDTGNS+G+ FI++ SFDASDAAI
Sbjct: 100 ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAI 159
Query: 182 EAMTGQYLCNRQITVSYAYKKYTKGERHGTPAERLLAATNPVTQKSRPHTLFASGPPTHP 361
EAM GQYLCNR ITVSYA+KK +KGERHG+ AERLLAA NP++Q RPH LFA PP P
Sbjct: 160 EAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPP-P 218
Query: 362 NAPQ------ANGIPRPFVNGGMPPVSIPGPRPTPPPPPPQVYQTQPPPSWQP 502
+AP +G+P P G PP S P P P P PP + PPP P
Sbjct: 219 SAPNPVVSSLGSGLPPP---GMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPP 268
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans
GN=sap-49 PE=1 SV=2
Length = 388
Score = 174 bits (441), Expect = 5e-043
Identities = 100/198 (50%), Positives = 122/198 (61%), Gaps = 21/198 (10%)
Frame = +2
Query: 2 ANLFIDNLDPDVDEKILYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAI 181
AN+F+ NLDP+VDEK+LYDTFSAFG I PKIMRD D+G S+GF FI++ SF+ASD A+
Sbjct: 100 ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Query: 182 EAMTGQYLCNRQITVSYAYKKYTKGERHGTPAERLLAATNPVTQKSRPHTLFASGPPTHP 361
EAM GQ+LCNR ITVSYA+K+ +KGERHGT AER+LAA NP+ K RPH +F+ P P
Sbjct: 160 EAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPLGVP 219
Query: 362 -NAPQANGIPRPFVNGGMPPVSIPGPRPTPPP---PPPQVYQTQ------PPPSWQPQPH 511
N P A P V+ + + P PPP YQ Q PPPS P P
Sbjct: 220 ANTPLA----MPGVHAAIAAHATGRPGYQPPPLMGMAQSGYQGQYPPVPPPPPSVTPMPP 275
Query: 512 QQQHGLAVPPPCSSVLPR 565
PP + PR
Sbjct: 276 PM-------PPTPGMTPR 286
>sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schizosaccharomyces
pombe GN=sap49 PE=2 SV=2
Length = 335
Score = 133 bits (333), Expect = 2e-030
Identities = 78/167 (46%), Positives = 99/167 (59%), Gaps = 10/167 (5%)
Frame = +2
Query: 2 ANLFIDNLDPDVDEKILYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAI 181
ANLF+ NLDP VDE++LYDTFSA G + P++ RD + G S+G+GF+SYDSF+ +DAAI
Sbjct: 99 ANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFETADAAI 157
Query: 182 EAMTGQYLCNRQITVSYAYKKYTKGERHGTPAERLLAATN-----PVTQKSRPHTLFASG 346
EAM Q+L N+ ITVSYA+K+ KGERHG AER LAA VT +S TL
Sbjct: 158 EAMNNQFLMNKPITVSYAFKREGKGERHGDIAERKLAAAAKKNKVAVTPQS---TLPPGF 214
Query: 347 PPTHPNAPQANGIPRPFVNGGMPPV-SIPGPRPTPPPPPPQVYQTQP 484
P P A P +PPV ++P T PP + P
Sbjct: 215 SPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNVLP 261
>sp|Q55GD6|SF3B4_DICDI Splicing factor 3B subunit 4 OS=Dictyostelium discoideum
GN=sf3b4 PE=3 SV=1
Length = 359
Score = 124 bits (311), Expect = 6e-028
Identities = 63/99 (63%), Positives = 79/99 (79%), Gaps = 2/99 (2%)
Frame = +2
Query: 2 ANLFIDNLDPDVDEKILYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAI 181
ANLFI NLD DVDE+IL+DTFS FG I PK+MRD + G S+GF FI++DSF+ASDAAI
Sbjct: 98 ANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRD-ENGVSKGFAFINFDSFEASDAAI 156
Query: 182 EAMTGQYLCNRQITVSYAYKKYTKGERHGTPAERLLAAT 298
EAM Q+LCN+ I+V+YA KK ERHG+ AER++AA+
Sbjct: 157 EAMNSQFLCNKPISVTYARKK-DSNERHGSSAERIIAAS 194
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium
discoideum GN=pabpc1A PE=1 SV=1
Length = 565
Score = 66 bits (160), Expect = 2e-010
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Frame = +2
Query: 5 NLFIDNLDPDVDEKILYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAIE 184
N+FI NLD +D K LYDTFSAFG I S K++ D D +S+GFGF+ Y++ +++D AI
Sbjct: 99 NVFIKNLDKGIDHKALYDTFSAFGNILS-CKVVTD-DGNSSKGFGFVHYETQESADKAIA 156
Query: 185 AMTGQYLCNRQITVSYAYKKYTKGERHGTPAE 280
+ G + +++ V + + G P E
Sbjct: 157 KVNGMMINGQKVFVG----PFKSSKERGQPTE 184
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 61 bits (147), Expect = 7e-009
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 FIDNLDPDVDEKILYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAM 190
F+ L D++ L + FS +G + + KI+ D +TG SRGFGF+++ S +A AIEAM
Sbjct: 9 FVGGLRWATDDQSLQNAFSKYGDVIDS-KIITDRETGRSRGFGFVTFASDEAMRQAIEAM 67
Query: 191 TGQYLCNRQITVSYAYKKYTKG 256
GQ L R ITV+ A + + G
Sbjct: 68 NGQDLDGRNITVNEAQSRRSDG 89
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba
PE=2 SV=1
Length = 169
Score = 56 bits (134), Expect = 2e-007
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Frame = +2
Query: 11 FIDNLDPDVDEKILYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAM 190
F+ L DE+ L FS FG + + KI+ D +TG SRGFGF+++ + AIE M
Sbjct: 11 FVGGLAWATDERSLETAFSQFGELVDS-KIINDRETGRSRGFGFVTFKDEKSMKDAIEGM 69
Query: 191 TGQYLCNRQITVSYAYKK 244
GQ L R ITV+ A +
Sbjct: 70 NGQDLDGRSITVNEAQSR 87
>sp|Q03250|GRP7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=GRP7 PE=1 SV=1
Length = 176
Score = 55 bits (132), Expect = 4e-007
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 FIDNLDPDVDEKILYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAM 190
F+ L D++ L F+ +G + + KI+ D +TG SRGFGF+++ A AIE M
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDS-KIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 191 TGQYLCNRQITVSYAYKKYTKG 256
GQ L R ITV+ A + + G
Sbjct: 70 NGQDLDGRSITVNEAQSRGSGG 91
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2
SV=1
Length = 157
Score = 55 bits (131), Expect = 5e-007
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 FIDNLDPDVDEKILYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAM 190
F+ L +++ L FS FG I ++ KI+ D +TG SRGFGF+++ + AIE M
Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDI-TDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGM 67
Query: 191 TGQYLCNRQITVSYAYKKYTKG 256
GQ L R ITV+ A + + G
Sbjct: 68 NGQELDGRNITVNEAQSRGSGG 89
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba
PE=2 SV=1
Length = 166
Score = 55 bits (131), Expect = 5e-007
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +2
Query: 11 FIDNLDPDVDEKILYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAM 190
F+ L D++ L FS +G + + KI+ D +TG SRGFGF+++ + AIE M
Sbjct: 11 FVGGLAWATDDRALETAFSQYGEVLDS-KIINDRETGRSRGFGFVTFKDEKSMKDAIEGM 69
Query: 191 TGQYLCNRQITVSYAYKKYTKG 256
GQ L R ITV+ A + + G
Sbjct: 70 NGQDLDGRSITVNEAQSRGSGG 91
>sp|Q9T0K5|LRX3_ARATH Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis
thaliana GN=LRX3 PE=1 SV=1
Length = 760
Score = 52 bits (123), Expect = 4e-006
Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +2
Query: 302 PVTQKSRPHTLFASGPPTHPNAPQANGIPRPFVNGGMPPVSIPGPRPTPPPPPPQVYQTQ 481
P P +++S PP AP RP PP S P P+ +PPPP P Y +
Sbjct: 507 PPVYSPPPPPVYSSPPPPPSPAPTPVYCTRP---PPPPPHSPPPPQFSPPPPEPYYYSSP 563
Query: 482 PPPSWQPQPHQQQHGLAVPPP 544
PPP P PH + PPP
Sbjct: 564 PPPHSSPPPHSPPPPHSPPPP 584
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum
bicolor GN=GRP1 PE=2 SV=1
Length = 142
Score = 52 bits (122), Expect = 5e-006
Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +2
Query: 50 LYDTFSAFGGIASNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAMTGQYLCNRQITVS 229
L+ FS +G + + KI+ D +T SRGFGF+++ + +A +AIE M G+ L R ITV+
Sbjct: 3 LHSAFSTYGEVLES-KIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVN 61
Query: 230 YAYKKYTKG 256
A + +G
Sbjct: 62 EAQSRGGRG 70
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 199,641,880,742
Number of Sequences: 518415
Number of Extensions: 199641880742
Number of Successful Extensions: 1223814225
Number of sequences better than 0.0: 0
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