BLASTX 7.6.2
Query= UN55159 /QuerySize=735
(734 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT5G59950.1 | Symbols: | RNA and export factor-b... 331 3e-091
TAIR9_protein||AT5G59950.3 | Symbols: | RNA and export factor-b... 327 5e-090
TAIR9_protein||AT5G59950.2 | Symbols: | RNA and export factor-b... 277 8e-075
TAIR9_protein||AT5G59950.4 | Symbols: | RNA and export factor-b... 253 1e-067
TAIR9_protein||AT5G02530.1 | Symbols: | RNA and export factor-b... 156 2e-038
TAIR9_protein||AT5G37720.1 | Symbols: | RNA and export factor-b... 139 2e-033
TAIR9_protein||AT1G66260.1 | Symbols: | RNA and export factor-b... 138 5e-033
TAIR9_protein||AT5G37720.2 | Symbols: | RNA and export factor-b... 129 3e-030
TAIR9_protein||AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | GR... 68 5e-012
TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1... 61 7e-010
TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A... 54 1e-007
>TAIR9_protein||AT5G59950.1 | Symbols: | RNA and export factor-binding protein,
putative | chr5:24140235-24141504 FORWARD
Length = 245
Score = 331 bits (848), Expect = 3e-091
Identities = 169/205 (82%), Positives = 176/205 (85%), Gaps = 2/205 (0%)
Frame = +2
Query: 5 GPIRRNNPNRKSNRSAPYQSSAKAPESTWEHDMYSSEGFPSRSTRSSAGIETGTKLYISN 184
GP RRNNPNRKS RSAPYQ SAKAPESTW HDM+S RS RSSAGIETGTKLYISN
Sbjct: 36 GPTRRNNPNRKSTRSAPYQ-SAKAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISN 94
Query: 185 LDYGVMNDDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYNDVQLD 364
LDYGVMN+DIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDA+AAVKKYNDVQLD
Sbjct: 95 LDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLD 154
Query: 365 GKPMKIEIVGNNLQAASAPSGRHGSANFGGASSRRGGHGRGGQQRRGGGGGQGGRGGGRG 544
GKPMKIEIVG NLQ A+APSGR + N GA RGG GRGGQQR GG GG G GGGRG
Sbjct: 155 GKPMKIEIVGTNLQTAAAPSGRPANGNSNGA-PWRGGQGRGGQQRGGGRGGGGRGGGGRG 213
Query: 545 RRSGKGPTEKVSAEDLDADLDKYHA 619
RR GKGP EK+SAEDLDADLDKYH+
Sbjct: 214 RRPGKGPAEKISAEDLDADLDKYHS 238
>TAIR9_protein||AT5G59950.3 | Symbols: | RNA and export factor-binding protein,
putative | chr5:24140235-24141504 FORWARD
Length = 243
Score = 327 bits (837), Expect = 5e-090
Identities = 167/205 (81%), Positives = 174/205 (84%), Gaps = 4/205 (1%)
Frame = +2
Query: 5 GPIRRNNPNRKSNRSAPYQSSAKAPESTWEHDMYSSEGFPSRSTRSSAGIETGTKLYISN 184
GP RRNNPNRKS RSAPYQS APESTW HDM+S RS RSSAGIETGTKLYISN
Sbjct: 36 GPTRRNNPNRKSTRSAPYQS---APESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISN 92
Query: 185 LDYGVMNDDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYNDVQLD 364
LDYGVMN+DIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDA+AAVKKYNDVQLD
Sbjct: 93 LDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLD 152
Query: 365 GKPMKIEIVGNNLQAASAPSGRHGSANFGGASSRRGGHGRGGQQRRGGGGGQGGRGGGRG 544
GKPMKIEIVG NLQ A+APSGR + N GA RGG GRGGQQR GG GG G GGGRG
Sbjct: 153 GKPMKIEIVGTNLQTAAAPSGRPANGNSNGA-PWRGGQGRGGQQRGGGRGGGGRGGGGRG 211
Query: 545 RRSGKGPTEKVSAEDLDADLDKYHA 619
RR GKGP EK+SAEDLDADLDKYH+
Sbjct: 212 RRPGKGPAEKISAEDLDADLDKYHS 236
>TAIR9_protein||AT5G59950.2 | Symbols: | RNA and export factor-binding protein,
putative | chr5:24140629-24141504 FORWARD
Length = 179
Score = 277 bits (706), Expect = 8e-075
Identities = 141/173 (81%), Positives = 148/173 (85%), Gaps = 1/173 (0%)
Frame = +2
Query: 101 MYSSEGFPSRSTRSSAGIETGTKLYISNLDYGVMNDDIKELFAEVGELKRYTVHFDRSGR 280
M+S RS RSSAGIETGTKLYISNLDYGVMN+DIKELFAEVGELKRYTVHFDRSGR
Sbjct: 1 MFSDRSEDHRSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGR 60
Query: 281 SKGTAEVVYSRRGDAIAAVKKYNDVQLDGKPMKIEIVGNNLQAASAPSGRHGSANFGGAS 460
SKGTAEVVYSRRGDA+AAVKKYNDVQLDGKPMKIEIVG NLQ A+APSGR + N GA
Sbjct: 61 SKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPANGNSNGA- 119
Query: 461 SRRGGHGRGGQQRRGGGGGQGGRGGGRGRRSGKGPTEKVSAEDLDADLDKYHA 619
RGG GRGGQQR GG GG G GGGRGRR GKGP EK+SAEDLDADLDKYH+
Sbjct: 120 PWRGGQGRGGQQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADLDKYHS 172
>TAIR9_protein||AT5G59950.4 | Symbols: | RNA and export factor-binding protein,
putative | chr5:24140235-24141410 FORWARD
Length = 212
Score = 253 bits (645), Expect = 1e-067
Identities = 129/154 (83%), Positives = 134/154 (87%), Gaps = 1/154 (0%)
Frame = +2
Query: 5 GPIRRNNPNRKSNRSAPYQSSAKAPESTWEHDMYSSEGFPSRSTRSSAGIETGTKLYISN 184
GP RRNNPNRKS RSAPYQ SAKAPESTW HDM+S RS RSSAGIETGTKLYISN
Sbjct: 36 GPTRRNNPNRKSTRSAPYQ-SAKAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISN 94
Query: 185 LDYGVMNDDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYNDVQLD 364
LDYGVMN+DIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDA+AAVKKYNDVQLD
Sbjct: 95 LDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLD 154
Query: 365 GKPMKIEIVGNNLQAASAPSGRHGSANFGGASSR 466
GKPMKIEIVG NLQ A+APSGR + N GA R
Sbjct: 155 GKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWR 188
>TAIR9_protein||AT5G02530.1 | Symbols: | RNA and export factor-binding protein,
putative | chr5:564332-565776 REVERSE
Length = 293
Score = 156 bits (392), Expect = 2e-038
Identities = 86/142 (60%), Positives = 99/142 (69%), Gaps = 3/142 (2%)
Frame = +2
Query: 146 AGIETGTKLYISNLDYGVMNDDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDA 325
+ IETGTKLYISNLDYGV N+DIKELF+EVG+LKRY +H+DRSGRSKGTAEVV+SRRGDA
Sbjct: 102 SSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDA 161
Query: 326 IAAVKKYNDVQLDGKPMKIEIVGNNLQAASAPSGRHGSANF--GGASSRRGGHGRGGQQR 499
+AAVK+YN+VQLDGK MKIEIVG NL A + P F G + G
Sbjct: 162 LAAVKRYNNVQLDGKLMKIEIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNG 221
Query: 500 RGGGGGQG-GRGGGRGRRSGKG 562
G +G GRGG GR G G
Sbjct: 222 NFNGNFRGRGRGGFMGRPRGGG 243
Score = 60 bits (143), Expect = 2e-009
Identities = 37/69 (53%), Positives = 42/69 (60%), Gaps = 8/69 (11%)
Frame = +2
Query: 437 SANFGGASSRRGGHGRGGQQRRGGGGG---QGGRG----GGRGRRSGKGPTEKVSAEDLD 595
+ NF G RG G G+ R GG GG +GGRG GGRG G+G E VSAEDLD
Sbjct: 220 NGNFNGNFRGRGRGGFMGRPRGGGFGGGNFRGGRGARGRGGRG-SGGRGRDENVSAEDLD 278
Query: 596 ADLDKYHAE 622
A+LDKYH E
Sbjct: 279 AELDKYHKE 287
>TAIR9_protein||AT5G37720.1 | Symbols: | RNA and export factor-binding protein,
putative | chr5:14981805-14983978 REVERSE
Length = 289
Score = 139 bits (349), Expect = 2e-033
Identities = 71/146 (48%), Positives = 101/146 (69%), Gaps = 8/146 (5%)
Frame = +2
Query: 143 SAGIETGTKLYISNLDYGVMNDDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGD 322
++G+E GT+L+++NLD GV N+DI+ELF+E+GE++RY +H+D++GR GTAEVVY RR D
Sbjct: 86 ASGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSD 145
Query: 323 AIAAVKKYNDVQLDGKPMKIEIVGNNLQAASAPSGRHGSANFGGASSRRGGHGRGGQQRR 502
A A+KKYN+V LDG+PM++EI+G N ++ AP + N G + R R ++
Sbjct: 146 AFQALKKYNNVLLDGRPMRLEILGGN-NSSEAPLSGRVNVNVTGLNGRL---KRTVVIQQ 201
Query: 503 GGGGGQGGRGGGRGRRSGKGPTEKVS 580
GG GGRG RG R G+GP VS
Sbjct: 202 GG----GGRGRVRGGRGGRGPAPTVS 223
>TAIR9_protein||AT1G66260.1 | Symbols: | RNA and export factor-binding protein,
putative | chr1:24695895-24697883 REVERSE
Length = 296
Score = 138 bits (346), Expect = 5e-033
Identities = 80/187 (42%), Positives = 112/187 (59%), Gaps = 13/187 (6%)
Frame = +2
Query: 5 GPIRRN--NPNRKSNRSAPYQSSAKAPES-TW--EHDMYSSEGFPSRSTRSSAGIETGTK 169
GP+RR N + + S A+ S W ++D+Y + +G+E GT
Sbjct: 53 GPVRRGPLAVNTRPSSSFSINKLARRKRSLPWQNQNDLYEE----TLRAVGVSGVEVGTT 108
Query: 170 LYISNLDYGVMNDDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVKKYN 349
+YI+NLD GV N+DI+EL+AE+GELKRY +H+D++GR G+AEVVY RR DAI A++KYN
Sbjct: 109 VYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGRPSGSAEVVYMRRSDAIQAMRKYN 168
Query: 350 DVQLDGKPMKIEIVGNNLQAASAPSGRHGSANFGGASSRRGGHGRGGQQRRGGGGGQGGR 529
+V LDG+PMK+EI+G N ++A + N G + R GQ RGG G+G
Sbjct: 169 NVLLDGRPMKLEILGGNTESAPVAA----RVNVTGLNGRMKRSVFIGQGVRGGRVGRGRG 224
Query: 530 GGGRGRR 550
G GRR
Sbjct: 225 SGPSGRR 231
>TAIR9_protein||AT5G37720.2 | Symbols: | RNA and export factor-binding protein,
putative | chr5:14981805-14983978 REVERSE
Length = 281
Score = 129 bits (322), Expect = 3e-030
Identities = 63/127 (49%), Positives = 91/127 (71%), Gaps = 3/127 (2%)
Frame = +2
Query: 143 SAGIETGTKLYISNLDYGVMNDDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGD 322
++G+E GT+L+++NLD GV N+DI+ELF+E+GE++RY +H+D++GR GTAEVVY RR D
Sbjct: 86 ASGVEVGTRLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKNGRPSGTAEVVYPRRSD 145
Query: 323 AIAAVKKYNDVQLDGKPMKIEIVGNNLQAASAPSGRHGSANFGGASSRRGGHGRGGQQRR 502
A A+KKYN+V LDG+PM++EI+G N ++ AP + N G + R Q R
Sbjct: 146 AFQALKKYNNVLLDGRPMRLEILGGN-NSSEAPLSGRVNVNVTGLNGRL--KRTVVIQVR 202
Query: 503 GGGGGQG 523
GG GG+G
Sbjct: 203 GGRGGRG 209
>TAIR9_protein||AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | GR-RBP2
(GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding /
double-stranded DNA binding / single-stranded DNA binding |
chr4:8021314-8022065 FORWARD
Length = 159
Score = 68 bits (165), Expect = 5e-012
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Frame = +2
Query: 164 TKLYISNLDYGVMNDDIKELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDAIAAVK 340
TKL+I L +G + +++ FA G++ V DR +GRS+G V ++ G A AA+
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 341 KYNDVQLDGKPMKIEIVGNNLQAASAPSGRHGSANFGGASSRRGGHGRGGQQRRGGGGGQ 520
+ + +L+G+ +++ A PS GG S GG+G GG GGGGG
Sbjct: 95 EMDGKELNGRHIRVN------PANDRPSAPRAYGGGGGYSGGGGGYGGGGGGYGGGGGGY 148
Query: 521 GGRG 532
GG G
Sbjct: 149 GGGG 152
>TAIR9_protein||AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1; nucleic acid
binding / nucleotide binding | chr1:18098186-18101422 FORWARD
Length = 558
Score = 61 bits (146), Expect = 7e-010
Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Frame = +2
Query: 167 KLYISNLDYGVMNDDIK----ELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDAIA 331
K+++ D + DDIK E F+ GE+K +V DR +G SKG A + +S
Sbjct: 402 KIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE------ 455
Query: 332 AVKKYNDVQLDGKPM----KIEIVGNNLQAASAPSGRHGSAN----FGGASSRRGGHGR- 484
K ++L+G M + + + S+ G G N GG R GG GR
Sbjct: 456 --GKEKALELNGSDMGGGFYLVVDEPRPRGDSSGGGGFGRGNGRFGSGGGRGRDGGRGRF 513
Query: 485 --GGQQRRGGGGGQGGRGGGRGRRSGKG 562
GG + R GG G+ G GGGRG G+G
Sbjct: 514 GSGGGRGRDGGRGRFGSGGGRGSDRGRG 541
>TAIR9_protein||AT2G23350.1 | Symbols: PAB4, PABP4 | PAB4 (POLY(A) BINDING
PROTEIN 4); RNA binding / translation initiation factor |
chr2:9943209-9946041 FORWARD
Length = 663
Score = 54 bits (127), Expect = 1e-007
Identities = 27/76 (35%), Positives = 42/76 (55%)
Frame = +2
Query: 161 GTKLYISNLDYGVMNDDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDAIAAVK 340
G LY+ NLD V ++ ++ELFAE G + V D SG SKG+ V +S +A +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLN 386
Query: 341 KYNDVQLDGKPMKIEI 388
+ N + GKP+ + +
Sbjct: 387 EMNGKMVGGKPLYVAL 402
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,626,273,657
Number of Sequences: 33410
Number of Extensions: 25626273657
Number of Successful Extensions: 814999693
Number of sequences better than 0.0: 0
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