BLASTX 7.6.2
Query= UN55230 /QuerySize=809
(808 letters)
Database: GenBank nr;
15,229,318 sequences; 5,219,829,378 total letters
Score E
Sequences producing significant alignments: (bits) Value
gi|227202572|dbj|BAH56759.1| AT3G52120 [Arabidopsis thaliana] 103 5e-020
gi|18409491|ref|NP_566957.1| Splicing factor 4-like protein [Ara... 96 7e-018
gi|4678941|emb|CAB41332.1| gamma response I protein [Arabidopsis... 96 7e-018
gi|186510957|ref|NP_001118822.1| Splicing factor 4-like protein ... 96 7e-018
gi|297816486|ref|XP_002876126.1| hypothetical protein ARALYDRAFT... 93 4e-017
gi|255544254|ref|XP_002513189.1| arginine/serine rich splicing f... 63 4e-008
gi|224055253|ref|XP_002298445.1| predicted protein [Populus tric... 60 4e-007
gi|224106045|ref|XP_002314024.1| predicted protein [Populus tric... 59 6e-007
>gi|227202572|dbj|BAH56759.1| AT3G52120 [Arabidopsis thaliana]
Length = 180
Score = 103 bits (255), Expect = 5e-020
Identities = 56/75 (74%), Positives = 61/75 (81%), Gaps = 7/75 (9%)
Frame = +1
Query: 250 NDAQKKGGKLAFSLKQKSKLLAPPVKLG--EEEDDEDVQNDQSFGSAKRPKL---DAPAK 414
NDAQKKGGKLAFSLKQKSKLLAPPVKLG E+EDDEDV+++Q FGS KR KL D P K
Sbjct: 63 NDAQKKGGKLAFSLKQKSKLLAPPVKLGTEEDEDDEDVKHEQGFGSVKRQKLEQRDTPVK 122
Query: 415 STKLSDVVVGNGCLY 459
S K+SD VGN CLY
Sbjct: 123 SAKVSD--VGNACLY 135
Score = 62 bits (150), Expect = 7e-008
Identities = 37/58 (63%), Positives = 43/58 (74%), Gaps = 7/58 (12%)
Frame = +2
Query: 89 PPSIFVNDGSFMERFRQLQQEK-KDEAKPVKI----IISGISNPRPSSSATKTSIGFK 247
PPSIFVNDGSFMERFRQLQQEK KD+ K V++ + ISNP+P +A K SIG K
Sbjct: 6 PPSIFVNDGSFMERFRQLQQEKDKDKDKVVQVEDSKPVKIISNPKP--AANKISIGLK 61
>gi|18409491|ref|NP_566957.1| Splicing factor 4-like protein [Arabidopsis
thaliana]
Length = 443
Score = 96 bits (236), Expect = 7e-018
Identities = 51/67 (76%), Positives = 56/67 (83%), Gaps = 5/67 (7%)
Frame = +1
Query: 250 NDAQKKGGKLAFSLKQKSKLLAPPVKLG--EEEDDEDVQNDQSFGSAKRPKL---DAPAK 414
NDAQKKGGKLAFSLKQKSKLLAPPVKLG E+EDDEDV+++Q FGS KR KL D P K
Sbjct: 63 NDAQKKGGKLAFSLKQKSKLLAPPVKLGTEEDEDDEDVKHEQGFGSVKRQKLEQRDTPVK 122
Query: 415 STKLSDV 435
S K+SDV
Sbjct: 123 SAKVSDV 129
Score = 62 bits (150), Expect = 7e-008
Identities = 37/58 (63%), Positives = 43/58 (74%), Gaps = 7/58 (12%)
Frame = +2
Query: 89 PPSIFVNDGSFMERFRQLQQEK-KDEAKPVKI----IISGISNPRPSSSATKTSIGFK 247
PPSIFVNDGSFMERFRQLQQEK KD+ K V++ + ISNP+P +A K SIG K
Sbjct: 6 PPSIFVNDGSFMERFRQLQQEKDKDKDKVVQVEDSKPVKIISNPKP--AANKISIGLK 61
>gi|4678941|emb|CAB41332.1| gamma response I protein [Arabidopsis thaliana]
Length = 1110
Score = 96 bits (236), Expect = 7e-018
Identities = 51/67 (76%), Positives = 56/67 (83%), Gaps = 5/67 (7%)
Frame = +1
Query: 250 NDAQKKGGKLAFSLKQKSKLLAPPVKLG--EEEDDEDVQNDQSFGSAKRPKL---DAPAK 414
NDAQKKGGKLAFSLKQKSKLLAPPVKLG E+EDDEDV+++Q FGS KR KL D P K
Sbjct: 715 NDAQKKGGKLAFSLKQKSKLLAPPVKLGTEEDEDDEDVKHEQGFGSVKRQKLEQRDTPVK 774
Query: 415 STKLSDV 435
S K+SDV
Sbjct: 775 SAKVSDV 781
Score = 70 bits (170), Expect = 3e-010
Identities = 44/70 (62%), Positives = 51/70 (72%), Gaps = 11/70 (15%)
Frame = +2
Query: 53 VLAMDKGAPPPPPPSIFVNDGSFMERFRQLQQEK-KDEAKPVKI----IISGISNPRPSS 217
+LAMDKGA PPSIFVNDGSFMERFRQLQQEK KD+ K V++ + ISNP+P
Sbjct: 650 LLAMDKGA----PPSIFVNDGSFMERFRQLQQEKDKDKDKVVQVEDSKPVKIISNPKP-- 703
Query: 218 SATKTSIGFK 247
+A K SIG K
Sbjct: 704 AANKISIGLK 713
>gi|186510957|ref|NP_001118822.1| Splicing factor 4-like protein [Arabidopsis
thaliana]
Length = 414
Score = 96 bits (236), Expect = 7e-018
Identities = 51/67 (76%), Positives = 56/67 (83%), Gaps = 5/67 (7%)
Frame = +1
Query: 250 NDAQKKGGKLAFSLKQKSKLLAPPVKLG--EEEDDEDVQNDQSFGSAKRPKL---DAPAK 414
NDAQKKGGKLAFSLKQKSKLLAPPVKLG E+EDDEDV+++Q FGS KR KL D P K
Sbjct: 63 NDAQKKGGKLAFSLKQKSKLLAPPVKLGTEEDEDDEDVKHEQGFGSVKRQKLEQRDTPVK 122
Query: 415 STKLSDV 435
S K+SDV
Sbjct: 123 SAKVSDV 129
Score = 62 bits (150), Expect = 7e-008
Identities = 37/58 (63%), Positives = 43/58 (74%), Gaps = 7/58 (12%)
Frame = +2
Query: 89 PPSIFVNDGSFMERFRQLQQEK-KDEAKPVKI----IISGISNPRPSSSATKTSIGFK 247
PPSIFVNDGSFMERFRQLQQEK KD+ K V++ + ISNP+P +A K SIG K
Sbjct: 6 PPSIFVNDGSFMERFRQLQQEKDKDKDKVVQVEDSKPVKIISNPKP--AANKISIGLK 61
>gi|297816486|ref|XP_002876126.1| hypothetical protein ARALYDRAFT_323761
[Arabidopsis lyrata subsp. lyrata]
Length = 1114
Score = 93 bits (230), Expect = 4e-017
Identities = 49/67 (73%), Positives = 55/67 (82%), Gaps = 5/67 (7%)
Frame = +1
Query: 250 NDAQKKGGKLAFSLKQKSKLLAPPVKLG--EEEDDEDVQNDQSFGSAKRPKL---DAPAK 414
NDAQKKGGKLAFSLKQKSKLLAPPVKLG E+ED+ED +N+Q FGS KR KL D P K
Sbjct: 722 NDAQKKGGKLAFSLKQKSKLLAPPVKLGTEEDEDEEDARNEQGFGSVKRQKLEQRDTPVK 781
Query: 415 STKLSDV 435
S ++SDV
Sbjct: 782 SARVSDV 788
Score = 66 bits (160), Expect = 5e-009
Identities = 43/73 (58%), Positives = 51/73 (69%), Gaps = 11/73 (15%)
Frame = +2
Query: 65 DKGAPPPPPPSIFVNDGSFMERFRQLQQEK-KDEAKPVKI----IISGISNPRPSSSATK 229
+KGA PPSIFVNDGSFMERFRQLQQEK KD+ K V++ + ISNP+P SA K
Sbjct: 661 NKGA----PPSIFVNDGSFMERFRQLQQEKDKDKDKVVQVEDSKPVKIISNPKP--SANK 714
Query: 230 TSIGFKTMMHRRK 268
SIG KT ++K
Sbjct: 715 ISIGLKTNDAQKK 727
>gi|255544254|ref|XP_002513189.1| arginine/serine rich splicing factor sf4/14,
putative [Ricinus communis]
Length = 441
Score = 63 bits (152), Expect = 4e-008
Identities = 36/59 (61%), Positives = 41/59 (69%), Gaps = 3/59 (5%)
Frame = +1
Query: 268 GGKLAFSLKQKSKLLAPPVKLGEEEDDEDVQNDQSFGSAKRPKL---DAPAKSTKLSDV 435
GGKLAFSLKQKSK++ P VKLGE+EDD DV N SAKR KL D+ S+K DV
Sbjct: 79 GGKLAFSLKQKSKIVTPVVKLGEDEDDADVGNVSGDASAKRQKLSQSDSSELSSKQVDV 137
>gi|224055253|ref|XP_002298445.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 60 bits (143), Expect = 4e-007
Identities = 39/73 (53%), Positives = 46/73 (63%), Gaps = 11/73 (15%)
Frame = +1
Query: 250 NDAQK-----KGGKLAFSLKQKSKLLAPPVKLGEEEDDE---DVQNDQSFGSAKRPK--- 396
ND +K GGKLAFSLKQKSKL+AP VKLGE+E+DE D N SAKR K
Sbjct: 68 NDGRKTPPTASGGKLAFSLKQKSKLMAPAVKLGEDEEDEDEVDAVNASGDVSAKRQKLGQ 127
Query: 397 LDAPAKSTKLSDV 435
LD +S++ DV
Sbjct: 128 LDTSEQSSRRLDV 140
>gi|224106045|ref|XP_002314024.1| predicted protein [Populus trichocarpa]
Length = 441
Score = 59 bits (142), Expect = 6e-007
Identities = 40/73 (54%), Positives = 45/73 (61%), Gaps = 11/73 (15%)
Frame = +1
Query: 250 NDAQK-----KGGKLAFSLKQKSKLLAPPVKLGEEEDDE---DVQNDQSFGSAKRPK--- 396
NDA K GKLAFSLKQKSKL+AP VKLGE+++DE D N SAKR K
Sbjct: 68 NDASKTSQTASSGKLAFSLKQKSKLVAPAVKLGEDDEDEDEADAVNTSGGVSAKRQKLGQ 127
Query: 397 LDAPAKSTKLSDV 435
LDA +S K DV
Sbjct: 128 LDASEQSLKRLDV 140
Database: GenBank nr
Posted date: Thu Sep 08 23:06:31 2011
Number of letters in database: 5,219,829,378
Number of sequences in database: 15,229,318
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,766,393,936,687
Number of Sequences: 15229318
Number of Extensions: 5766393936687
Number of Successful Extensions: 1363926624
Number of sequences better than 0.0: 0
|
