BLASTX 7.6.2

Query= UN56037 /QuerySize=669
        (668 letters)

Database: TAIR9 protein;
          33,410 sequences; 13,468,323 total letters
                                                                  Score    E
Sequences producing significant alignments:                       (bits) Value

TAIR9_protein||AT5G09320.1 | Symbols: VPS9B | VPS9B | chr5:28890...    309   2e-084
TAIR9_protein||AT1G62350.1 | Symbols:  | FUNCTIONS IN: molecular...     84   7e-017
TAIR9_protein||AT3G46870.1 | Symbols:  | pentatricopeptide (PPR)...     81   6e-016
TAIR9_protein||AT3G27750.1 | Symbols:  | FUNCTIONS IN: molecular...     79   2e-015

>TAIR9_protein||AT5G09320.1 | Symbols: VPS9B | VPS9B | chr5:2889007-2892016
        REVERSE

          Length = 713

 Score =  309 bits (789), Expect = 2e-084
 Identities = 165/208 (79%), Positives = 175/208 (84%), Gaps = 9/208 (4%)
 Frame = +2

Query:  53 GRGLRGCAGEILRLGFTVPRGVSGRNPILRRAMVIKMRDRSKNRKPLQRGRMLSIEAIQA 232
           G GLR C  +ILRLGF +  G  GR  IL+RAMVIKMRDRSKNRKPLQRGRMLSIEAIQA
Sbjct: 453 GIGLRSCGDDILRLGFKLRGGTGGRIQILQRAMVIKMRDRSKNRKPLQRGRMLSIEAIQA 512

Query: 233 VQALKRAN--TPPSP-------SSSSSMLDRVIDSKIRRLLKFDMVAVLRELLRQNECSL 385
           VQALKRAN   PP P       SSSS++LDRVI SK RRLLKFDMVAVLRELLRQNECSL
Sbjct: 513 VQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLKFDMVAVLRELLRQNECSL 572

Query: 386 ALKVFEEIRKEYWYKPHVRLYADMIAVMAGNSLLEEVNRLYAAMKSEKGLTAEIESFDTL 565
           ALKVFEEIRKEYWYKP VR+Y DMI VMA NSL+EEVN LY+AMKSEKGL AEIE F+TL
Sbjct: 573 ALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTL 632

Query: 566 LVILLNHKLFELVMDCYGFMQSIGYEPD 649
           L ILLNHKLF+LVMDCY FMQSIGYEPD
Sbjct: 633 LTILLNHKLFDLVMDCYAFMQSIGYEPD 660

>TAIR9_protein||AT1G62350.1 | Symbols:  | FUNCTIONS IN: molecular_function
        unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot
        apex; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat
        (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is:
        pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G46870.1);
        Has 136 Blast hits to 136 proteins in 9 species: Archae - 0; Bacteria -
        0; Metazoa - 2; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes
        - 0 (source: NCBI BLink). | chr1:23056653-23057935 FORWARD

          Length = 197

 Score =  84 bits (206), Expect = 7e-017
 Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
 Frame = +2

Query: 230 AVQALKRANTPPSPSSSSSMLDRVIDSKIRRLLKFDMVAVLRELLRQNECSLALKVFEEI 409
           A + LKR  T       S  LDR I S + RLLK D+V+VL E  RQN+  L +K++E +
Sbjct:   8 AAKELKRLQT------QSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEVV 61

Query: 410 RKEYWYKPHVRLYADMIAVMAGNSLLEEVNRLYAAMKSEKGLTAEIESFDTLLVILLNHK 589
           R+E WY+P +  Y DM+ ++A N  ++E  +++  +K E+ L  +  +F  L+   L+++
Sbjct:  62 RREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDNE 120

Query: 590 LFELVMDCYGFMQSIGYEPDSIP 658
           L    M  YG M+     P S+P
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLP 143

>TAIR9_protein||AT3G46870.1 | Symbols:  | pentatricopeptide (PPR)
        repeat-containing protein | chr3:17263011-17264022 FORWARD

          Length = 258

 Score =  81 bits (198), Expect = 6e-016
 Identities = 46/116 (39%), Positives = 69/116 (59%), Gaps = 7/116 (6%)
 Frame = +2

Query: 182 RKPLQRG-RMLSIEAIQAVQALKRANTPPSPSSSSSMLDRVIDSKIRRLLKFDMVAVLRE 358
           R PL RG +++  EA+  +  LKR             LD+ I + + RLLK DM+AV+ E
Sbjct:  63 RGPLWRGKKLIGKEALFVILGLKRL------KEDDEKLDKFIKTHVFRLLKLDMLAVIGE 116

Query: 359 LLRQNECSLALKVFEEIRKEYWYKPHVRLYADMIAVMAGNSLLEEVNRLYAAMKSE 526
           L RQ E +LA+K+FE I+K+ WY+P V +Y D+I  +A +  ++E   L+  MK E
Sbjct: 117 LERQEETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE 172

>TAIR9_protein||AT3G27750.1 | Symbols:  | FUNCTIONS IN: molecular_function
        unknown; INVOLVED IN: biological_process unknown; LOCATED IN:
        chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
        growth stages; BEST Arabidopsis thaliana protein match is: VPS9B
        (TAIR:AT5G09320.1); Has 54 Blast hits to 54 proteins in 6 species:
        Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses
        - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
        chr3:10284820-10285488 FORWARD

          Length = 223

 Score =  79 bits (194), Expect = 2e-015
 Identities = 57/162 (35%), Positives = 92/162 (56%), Gaps = 9/162 (5%)
 Frame = +2

Query: 179 NRKPLQRGRMLSIEAIQAVQALKRANTPPSPSSSSSMLDRVIDSKIRRLLKFDMVAVLRE 358
           NR PL +GR+LS EAIQ++Q+LKRA+       S S+  R     +RRL+K D+++VLRE
Sbjct:  38 NRGPLLKGRILSTEAIQSIQSLKRAH---RTGVSLSLTLR----PLRRLIKSDLISVLRE 90

Query: 359 LLRQNECSLALKVFEEIRKEYWYKPHVRLYADMIAVMAGNSLLEEVNRLYAAMKSEKGLT 538
           LLRQ+ C+LA+ V   +R EY     V LYAD++  +  N   +E++RL   +       
Sbjct:  91 LLRQDYCTLAVHVLSTLRTEYPPLDLV-LYADIVNALTRNKEFDEIDRLIGEIDG-IDQR 148

Query: 539 AEIESFDTLLVILLNHKLFELVMDCYGFMQSIGYEPDSIPLD 664
           ++ ++   L+  ++  +  E V+  Y  M+  G+  +S   D
Sbjct: 149 SDDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEAD 190

  Database: TAIR9 protein
    Posted date:  Wed Jul 08 15:16:08 2009
  Number of letters in database: 13,468,323
  Number of sequences in database:  33,410

Lambda     K     H
   0.267   0.041    0.140
Gapped
Lambda     K     H
   0.267   0.041    0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,984,649,515
Number of Sequences: 33410
Number of Extensions: 25984649515
Number of Successful Extensions: 836181791
Number of sequences better than 0.0: 0