BLASTX 7.6.2
Query= UN56281 /QuerySize=459
(458 letters)
Database: UniProt/SwissProt;
518,415 sequences; 182,829,261 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Dr... 74 2e-013
sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xe... 72 1e-012
sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=M... 72 2e-012
sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bo... 71 2e-012
sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Ho... 71 2e-012
sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mu... 71 2e-012
sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus ... 71 2e-012
sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=H... 71 3e-012
sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102 O... 68 2e-011
sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=D... 63 6e-010
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila
melanogaster GN=snf PE=1 SV=1
Length = 216
Score = 74 bits (181), Expect = 2e-013
Identities = 40/78 (51%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = -2
Query: 367 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFAYEMQSTAAMHGL 188
PPN ILF+ +LP +T L LF + GFKEVR+V + IAFVEF E+QS AA L
Sbjct: 139 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEAL 198
Query: 187 EGFTIHQT-PMHITYVKK 137
+GF I T M IT+ KK
Sbjct: 199 QGFKITPTHAMKITFAKK 216
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis
GN=snrpa PE=2 SV=1
Length = 282
Score = 72 bits (175), Expect = 1e-012
Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = -2
Query: 382 PEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFAYEMQSTA 203
P + PPN+ILF+ +LP +T L LF + GFKEVR+V + IAFVEF E+Q+ A
Sbjct: 200 PISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGA 259
Query: 202 AMHGLEGFTIHQT-PMHITYVKK 137
A L+GF I Q+ M I++ KK
Sbjct: 260 ARESLQGFKITQSNSMKISFAKK 282
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus
GN=Snrpb2 PE=2 SV=1
Length = 225
Score = 72 bits (174), Expect = 2e-012
Identities = 45/104 (43%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Frame = -2
Query: 436 PYPGGGGGGGGGGVKSNFPEAP-APPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMV 260
P G G + P+ P PPN ILF+ +LP +T L LF + GFKEVR+V
Sbjct: 124 PGQGTPNAANTQGTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV 183
Query: 259 AAKPGIAFVEFAYEMQSTAAMHGLEGFTIHQTPMH---ITYVKK 137
+ IAFVEF + Q+ AA L+GF I TP H ITY KK
Sbjct: 184 PGRHDIAFVEFENDGQAGAARDALQGFKI--TPSHAMKITYAKK 225
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus
GN=SNRPA PE=2 SV=1
Length = 282
Score = 71 bits (173), Expect = 2e-012
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = -2
Query: 382 PEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFAYEMQSTA 203
P + PPN+ILF+ +LP +T L LF + GFKEVR+V + IAFVEF E+Q+ A
Sbjct: 200 PLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGA 259
Query: 202 AMHGLEGFTIHQ-TPMHITYVKK 137
A L+GF I Q M I++ KK
Sbjct: 260 ARDALQGFKITQNNAMKISFAKK 282
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens
GN=SNRPA PE=1 SV=3
Length = 282
Score = 71 bits (173), Expect = 2e-012
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = -2
Query: 382 PEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFAYEMQSTA 203
P + PPN+ILF+ +LP +T L LF + GFKEVR+V + IAFVEF E+Q+ A
Sbjct: 200 PLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGA 259
Query: 202 AMHGLEGFTIHQ-TPMHITYVKK 137
A L+GF I Q M I++ KK
Sbjct: 260 ARDALQGFKITQNNAMKISFAKK 282
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus
GN=Snrpa PE=2 SV=3
Length = 287
Score = 71 bits (173), Expect = 2e-012
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = -2
Query: 382 PEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFAYEMQSTA 203
P + PPN+ILF+ +LP +T L LF + GFKEVR+V + IAFVEF E+Q+ A
Sbjct: 205 PLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGA 264
Query: 202 AMHGLEGFTIHQ-TPMHITYVKK 137
A L+GF I Q M I++ KK
Sbjct: 265 ARDALQGFKITQNNAMKISFAKK 287
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA
PE=2 SV=1
Length = 282
Score = 71 bits (173), Expect = 2e-012
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Frame = -2
Query: 382 PEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFAYEMQSTA 203
P + PPN+ILF+ +LP +T L LF + GFKEVR+V + IAFVEF E+Q+ A
Sbjct: 200 PLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGA 259
Query: 202 AMHGLEGFTIHQ-TPMHITYVKK 137
A L+GF I Q M I++ KK
Sbjct: 260 ARDALQGFKITQNNAMKISFAKK 282
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens
GN=SNRPB2 PE=1 SV=1
Length = 225
Score = 71 bits (172), Expect = 3e-012
Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Frame = -2
Query: 382 PEAP-APPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFAYEMQST 206
P+ P PPN ILF+ +LP +T L LF + GFKEVR+V + IAFVEF + Q+
Sbjct: 142 PQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAG 201
Query: 205 AAMHGLEGFTIHQTPMH---ITYVKK 137
AA L+GF I TP H ITY KK
Sbjct: 202 AARDALQGFKI--TPSHAMKITYAKK 225
>sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102
OS=Schizosaccharomyces pombe GN=usp102 PE=1 SV=1
Length = 249
Score = 68 bits (164), Expect = 2e-011
Identities = 31/90 (34%), Positives = 53/90 (58%)
Frame = -2
Query: 406 GGGVKSNFPEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEF 227
G KS E PPN +L +Q++P + + L ++F + GF+EVRMV + GIAFVE+
Sbjct: 158 GAERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEY 217
Query: 226 AYEMQSTAAMHGLEGFTIHQTPMHITYVKK 137
+ ++T A +G G ++ + +T+ +K
Sbjct: 218 DSDREATVAKNGTTGMSLSGNQIKVTFARK 247
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium
discoideum GN=snrpb2 PE=3 SV=1
Length = 241
Score = 63 bits (152), Expect = 6e-010
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Frame = -2
Query: 367 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFAYEMQSTAAMHGL 188
PPN LFV++LP L LF + GFKEV MV +K GIAF+EF E++S AM L
Sbjct: 164 PPNKTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNL 223
Query: 187 EGFTI-HQTPMHITY 146
+ F + + PM +++
Sbjct: 224 QHFKVTPEKPMVVSF 238
Database: UniProt/SwissProt
Posted date: Sat Aug 07 14:36:18 2010
Number of letters in database: 182,829,261
Number of sequences in database: 518,415
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,055,350,260
Number of Sequences: 518415
Number of Extensions: 203055350260
Number of Successful Extensions: 1243317088
Number of sequences better than 0.0: 0
|
