BLASTX 7.6.2
Query= UN56281 /QuerySize=459
(458 letters)
Database: TAIR9 protein;
33,410 sequences; 13,468,323 total letters
Score E
Sequences producing significant alignments: (bits) Value
TAIR9_protein||AT2G47580.1 | Symbols: U1A | U1A (SPLICEOSOMAL PR... 134 2e-032
TAIR9_protein||AT2G30260.1 | Symbols: U2B'' | U2B'' (U2 small nu... 94 4e-020
TAIR9_protein||AT1G06960.1 | Symbols: | small nuclear ribonucle... 87 3e-018
TAIR9_protein||AT1G06960.2 | Symbols: | small nuclear ribonucle... 87 3e-018
TAIR9_protein||AT1G06960.3 | Symbols: | small nuclear ribonucle... 87 3e-018
>TAIR9_protein||AT2G47580.1 | Symbols: U1A | U1A (SPLICEOSOMAL PROTEIN U1A); RNA
binding / nucleic acid binding / nucleotide binding |
chr2:19517229-19518686 FORWARD
Length = 251
Score = 134 bits (337), Expect = 2e-032
Identities = 66/90 (73%), Positives = 71/90 (78%)
Frame = -2
Query: 403 GGVKSNFPEAPAPPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFA 224
GG+K N PEAPAPPNNILFVQ+LPH+TTP LQ LF Y GFKEVRM+ AKPGIAFVEFA
Sbjct: 162 GGMKPNMPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFA 221
Query: 223 YEMQSTAAMHGLEGFTIHQTPMHITYVKK* 134
EMQST AM GL+GF I Q M ITY KK*
Sbjct: 222 DEMQSTVAMQGLQGFKIQQNQMLITYAKK* 251
>TAIR9_protein||AT2G30260.1 | Symbols: U2B'' | U2B'' (U2 small nuclear
ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide
binding | chr2:12905557-12907434 REVERSE
Length = 233
Score = 94 bits (231), Expect = 4e-020
Identities = 46/79 (58%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Frame = -2
Query: 367 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFAYEMQSTAAMHGL 188
PPNNILF+Q+LPH+TT LQ LF Y GFKE+RM+ AKPGIAFVE+ ++Q++ AM L
Sbjct: 155 PPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPL 214
Query: 187 EGFTI-HQTPMHITYVKK* 134
+GF I Q PM I++ KK*
Sbjct: 215 QGFKITPQNPMVISFAKK* 233
>TAIR9_protein||AT1G06960.1 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135930-2137533
FORWARD
Length = 230
Score = 87 bits (215), Expect = 3e-018
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Frame = -2
Query: 367 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFAYEMQSTAAMHGL 188
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ ++QS+ AM L
Sbjct: 152 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 211
Query: 187 EGFTI-HQTPMHITYVKK* 134
+GF I Q PM +++ KK*
Sbjct: 212 QGFKITPQNPMVVSFAKK* 230
>TAIR9_protein||AT1G06960.2 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135930-2137533
FORWARD
Length = 229
Score = 87 bits (215), Expect = 3e-018
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Frame = -2
Query: 367 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFAYEMQSTAAMHGL 188
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ ++QS+ AM L
Sbjct: 151 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 210
Query: 187 EGFTI-HQTPMHITYVKK* 134
+GF I Q PM +++ KK*
Sbjct: 211 QGFKITPQNPMVVSFAKK* 229
>TAIR9_protein||AT1G06960.3 | Symbols: | small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative | chr1:2135982-2137533
FORWARD
Length = 201
Score = 87 bits (215), Expect = 3e-018
Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Frame = -2
Query: 367 PPNNILFVQHLPHDTTPERLQELFGNYHGFKEVRMVAAKPGIAFVEFAYEMQSTAAMHGL 188
PPNNILF+ +LP +T LQ LF Y GFKE+RM+ AKPGIAFVE+ ++QS+ AM L
Sbjct: 123 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQAL 182
Query: 187 EGFTI-HQTPMHITYVKK* 134
+GF I Q PM +++ KK*
Sbjct: 183 QGFKITPQNPMVVSFAKK* 201
Database: TAIR9 protein
Posted date: Wed Jul 08 15:16:08 2009
Number of letters in database: 13,468,323
Number of sequences in database: 33,410
Lambda K H
0.267 0.041 0.140
Gapped
Lambda K H
0.267 0.041 0.140
Matrix: blosum62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,071,374,763
Number of Sequences: 33410
Number of Extensions: 26071374763
Number of Successful Extensions: 836367870
Number of sequences better than 0.0: 0
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